+	337	2799	2463	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	peg	gi|49175990|ref|NC_000913.2|_337_2799		aspartate kinase	2.7.2.4, 1.1.1.3	CDS	bifunctional aspartokinase/homoserine dehydrogenase 1	1.1.1.3	thrA	
+	2801	3733	933	Homoserine kinase (EC 2.7.1.39)	peg	gi|49175990|ref|NC_000913.2|_2801_3733		homoserine kinase (EC 2.7.1.39)	2.7.1.39	CDS	homoserine kinase	2.7.1.39	thrB	
+	3734	5020	1287	Threonine synthase (EC 4.2.3.1)	peg	gi|49175990|ref|NC_000913.2|_3734_5020		L-threonine synthase (EC 4.2.3.1)	4.2.3.1	CDS	threonine synthase	4.2.3.1	thrC	
-	5310	5537	228	FIG00638853: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_5537_5310					conserved hypothetical protein			
+	5234	5530	297				Protein of unknown function (DUF2502).		CDS				
-	5683	6459	777	UPF0246 protein YaaA	peg	gi|49175990|ref|NC_000913.2|_6459_5683		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	6529	7959	1431	Putative alanine/glycine transport protein	peg	gi|49175990|ref|NC_000913.2|_7959_6529		amino acid carrier protein		CDS	amino acid carrier family protein		agcS	
+	8238	9191	954	Transaldolase (EC 2.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_8238_9191		transaldolase (EC 2.2.1.2)	2.2.1.2	CDS	transaldolase	2.2.1.2	tal	
+	9306	9893	588	"Molybdopterin biosynthesis Mog protein, molybdochelatase"	peg	gi|49175990|ref|NC_000913.2|_9306_9893		molybdopterin adenylyltransferase (EC 2.7.7.75)		CDS	molybdopterin adenylyltransferase		mog	
-	9928	10494	567	YaaH protein	peg	gi|49175990|ref|NC_000913.2|_10494_9928		Predicted membrane protein		CDS	inner membrane protein yaaH		yaaH	
-	10643	11356	714	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_11356_10643		Uncharacterized protein conserved in bacteria		CDS	ubiquinol-cytochrome C chaperone family protein			
-	11382	11786	405	FIG00638537: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_11786_11382		Protein of unknown function (DUF2541).		CDS	conserved hypothetical protein			
+	12163	14079	1917	Chaperone protein DnaK	peg	gi|49175990|ref|NC_000913.2|_12163_14079		chaperone protein DnaK		CDS	chaperone protein DnaK		dnaK	
+	14168	15298	1131	Chaperone protein DnaJ	peg	gi|49175990|ref|NC_000913.2|_14168_15298		chaperone protein DnaJ		CDS	chaperone protein DnaJ		dnaJ	
+	15445	16557	1113	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_15445_16557		FOG: Transposase and inactivated derivatives		CDS	transposase DDE domain protein			
-	16751	16903	153				Hok/gef family.		CDS				
-	16901	17053	153										
+	17489	18655	1167	Na+/H+ antiporter NhaA type	peg	gi|49175990|ref|NC_000913.2|_17489_18655		sodium/proton antiporter, NhaA family (TC 2.A.33.1.1)		CDS	na+/H+ antiporter NhaA		nhaA	
+	18715	19620	906	Transcriptional activator NhaR	peg	gi|49175990|ref|NC_000913.2|_18715_19620		Transcriptional regulator		CDS	transcriptional activator protein nhaR		nhaR	
-	19811	20314	504	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_20314_19811		Transposase and inactivated derivatives, IS1 family		CDS	putative transposase			
-	20233	20508	276				Transposase and inactivated derivatives		CDS				
-	20815	21078	264	SSU ribosomal protein S20p	peg	gi|49175990|ref|NC_000913.2|_21000_20815		SSU ribosomal protein S20P		CDS	ribosomal protein S20		rpsT	
+	21407	22348	942	Riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)	peg	gi|49175990|ref|NC_000913.2|_21461_22348		FMN adenylyltransferase (EC 2.7.7.2)/riboflavin kinase (EC 2.7.1.26)	2.7.1.26, 2.7.7.2	CDS	riboflavin biosynthesis protein RibF	2.7.1.26	ribF	
+	22391	25207	2817	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	peg	gi|49175990|ref|NC_000913.2|_22391_25207		Isoleucyl-tRNA synthetase (EC 6.1.1.5)	6.1.1.5	CDS	isoleucine--tRNA ligase	6.1.1.5	ileS	
+	25207	25701	495	Lipoprotein signal peptidase (EC 3.4.23.36)	peg	gi|49175990|ref|NC_000913.2|_25207_25701		signal peptidase II (EC:3.4.23.36). Aspartic peptidase. MEROPS family A08	3.4.23.36	CDS	signal peptidase II	3.4.23.36	lspA	
+	25826	26275	450	FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_25826_26275		FKBP-type peptidyl-prolyl cis-trans isomerases 2	5.2.1.8	CDS	FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase	5.2.1.8	fkpB	
+	26277	27227	951	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	peg	gi|49175990|ref|NC_000913.2|_26277_27227		4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	1.17.1.2	CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2	ispH	
+	27293	28207	915	Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	peg	gi|49175990|ref|NC_000913.2|_27293_28207		Inosine-uridine nucleoside N-ribohydrolase	3.2.-	CDS	non-specific ribonucleoside hydrolase rihC	3.2.-.-	rihC	
+	28374	29195	822	Dihydrodipicolinate reductase (EC 1.3.1.26)	peg	gi|49175990|ref|NC_000913.2|_28374_29195		dihydrodipicolinate reductase (EC 1.3.1.26)	1.3.1.26	CDS	dihydrodipicolinate reductase	1.3.1.26	dapB	
+	29651	30799	1149	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	peg	gi|49175990|ref|NC_000913.2|_29651_30799		carbamoyl-phosphate synthase, small subunit	6.3.5.5	CDS	carbamoyl-phosphate synthase small chain	6.3.5.5	carA	
+	30817	34038	3222	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	peg	gi|49175990|ref|NC_000913.2|_30817_34038		carbamoyl-phosphate synthase, large subunit	6.3.5.5	CDS	carbamoyl-phosphate synthase large chain	6.3.5.5	carB	
-	34086	34265	180	orf; Unknown function	peg	gi|49175990|ref|NC_000913.2|_34265_34086					putative hypothe			
+	34300	34695	396	Transcriptional activatory protein CaiF	peg	gi|49175990|ref|NC_000913.2|_34300_34695		Protein of unknown function (DUF1401).		CDS	conserved hypothetical protein			
-	34781	35371	591	Carnitine operon protein CaiE	peg	gi|49175990|ref|NC_000913.2|_35371_34781		Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily		CDS	bacterial transferase hexapeptide family protein			
-	35377	36270	894	Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_36270_35377		Enoyl-CoA hydratase/carnithine racemase	4.2.1.-	CDS	carnitinyl-CoA dehydratase	4.2.1.-	caiD	
-	36271	37824	1554	Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-)	peg	gi|49175990|ref|NC_000913.2|_37824_36271		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	AMP-binding enzyme family protein			
-	37898	39115	1218	Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-)	peg	gi|49175990|ref|NC_000913.2|_39115_37898		Predicted acyl-CoA transferases/carnitine dehydratase	2.8.3.-	CDS	crotonobetainyl-CoA:carnitine CoA-transferase	2.8.3.-	caiB	
-	39244	40386	1143	Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-)	peg	gi|49175990|ref|NC_000913.2|_40386_39244		Acyl-CoA dehydrogenases	1.3.99.-	CDS	crotonobetainyl-CoA dehydrogenase	1.3.99.-	caiA	
-	40417	41931	1515	L-carnitine/gamma-butyrobetaine antiporter	peg	gi|49175990|ref|NC_000913.2|_41931_40417		choline/carnitine/betaine transport		CDS	L-carnitine/gamma-butyrobetaine antiporter		caiT	
+	42403	43173	771	"Electron transfer flavoprotein, beta subunit FixA"	peg	gi|49175990|ref|NC_000913.2|_42403_43173		electron transfer flavoprotein beta subunit		CDS	electron transfer flavodomain protein			
+	43188	44129	942	"Electron transfer flavoprotein, alpha subunit FixB"	peg	gi|49175990|ref|NC_000913.2|_43188_44129		electron transfer flavoprotein alpha subunit apoprotein		CDS	electron transfer flavodomain protein			
+	44180	45466	1287	Probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-)	peg	gi|49175990|ref|NC_000913.2|_44180_45466		Dehydrogenases (flavoproteins)	1.5.5.-	CDS	FAD binding domain protein			
+	45463	45750	288	Ferredoxin-like protein FixX	peg	gi|49175990|ref|NC_000913.2|_45463_45750		Ferredoxin-like protein		CDS	putative ferredoxin			
+	45807	47138	1332	Putative metabolite transport protein yaaU	peg	gi|49175990|ref|NC_000913.2|_45807_47138		Sugar phosphate permease		CDS	sugar (and other) transporter family protein			
+	47246	47776	531	Glutathione-regulated potassium-efflux system ancillary protein KefF	peg	gi|49175990|ref|NC_000913.2|_47246_47776		Kef-type potassium/proton antiporter accessory protein, CPA2 family (TC 2.A.37.1)		CDS	glutathione-regulated potassium-efflux system ancillary protein kefF		kefF	
+	47769	49631	1863	Glutathione-regulated potassium-efflux system protein KefC	peg	gi|49175990|ref|NC_000913.2|_47769_49631		Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)		CDS	glutathione-regulated potassium-efflux system protein kefC		kefC	
+	49712	50302	591	Dihydrofolate reductase (EC 1.5.1.3)	peg	gi|49175990|ref|NC_000913.2|_49712_50302		dihydrofolate reductase (EC 1.5.1.3)	1.5.1.3	CDS	dihydrofolate reductase	1.5.1.3	folA	
-	50380	51222	843	"Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)"	peg	gi|49175990|ref|NC_000913.2|_51222_50380		Bis(5'nucleosyl)-tetraphosphatase, ApaH	3.6.1.41	CDS	bis	3.6.1.41	apaH	
-	51229	51606	378	ApaG protein	peg	gi|49175990|ref|NC_000913.2|_51480_51229		Uncharacterized protein affecting Mg2+/Co2+ transport		CDS	conserved hypothetical protein			
-	51609	52430	822	"SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) ## SSU rRNA m6,m6-A1518-1519"	peg	gi|49175990|ref|NC_000913.2|_52358_51609		dimethyladenosine transferase (EC 2.1.1.-)	2.1.1.182	CDS	dimethyladenosine transferase	2.1.1.-	ksgA	
-	52427	53416	990	4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	peg	gi|49175990|ref|NC_000913.2|_53416_52427		4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)	1.1.1.262	CDS	4-hydroxythreonine-4-phosphate dehydrogenase	1.1.1.262	pdxA	
-	53416	54702	1287	Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_54702_53416		periplasmic chaperone for outer membrane proteins SurA	5.2.1.8	CDS	surA N-terminal domain protein			
-	54755	57109	2355	"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor"	peg	gi|49175990|ref|NC_000913.2|_57076_54755		Organic solvent tolerance protein OstA		CDS	LPS-assembly protein lptD		lptD	
+	57364	58179	816	DnaJ-like protein DjlA	peg	gi|49175990|ref|NC_000913.2|_57364_58179		DnaJ-domain-containing proteins 1		CDS	dnaJ-like protein DjlA		djlA	
+	58474	59124	651	FIG00638467: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_58474_59124		hypothetical protein		CDS	putative undecaprenyl pyrophosphate phosphatase [multifunctional]			
+	59121	59279	159	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_59121_59279		hypothetical protein		CDS	hypothetical protein			
-	59687	60346	660	Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_60346_59687		ribosomal large subunit pseudouridine synthase A (EC 5.4.99.-)	5.4.99.28, 5.4.99.29	CDS	pseudouridine synthase, RluA family protein	5.4.99.-		
-	60358	63264	2907	RNA polymerase associated protein RapA (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_63117_60358		Superfamily II DNA/RNA helicases, SNF2 family	3.6.4.-	CDS	RNA polymerase-associated protein rapA	3.6.4.-	rapA	
-	63429	65780	2352	DNA polymerase II (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_65780_63429		DNA polymerase elongation subunit (family B)	2.7.7.7	CDS	DNA polymerase II	2.7.7.7	polB	
-	65855	66550	696	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_66550_65855		L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4	CDS	L-ribulose-5-phosphate 4-epimerase	5.1.3.4	araD	
-	66835	68337	1503	L-arabinose isomerase (EC 5.3.1.4)	peg	gi|49175990|ref|NC_000913.2|_68337_66835		L-arabinose isomerase (EC 5.3.1.4)	5.3.1.4	CDS	L-arabinose isomerase	5.3.1.4	araA	
-	68348	70048	1701	Ribulokinase (EC 2.7.1.16)	peg	gi|49175990|ref|NC_000913.2|_70048_68348		L-ribulokinase (EC 2.7.1.16)	2.7.1.16	CDS	L-ribulokinase	2.7.1.16	araB	
+	70378	71265	888	Arabinose operon regulatory protein	peg	gi|49175990|ref|NC_000913.2|_70378_71265		transcriptional regulator, AraC family		CDS	arabinose operon regulatory protein		araC	
+	71351	72115	765	DedA family inner membrane protein YabI	peg	gi|49175990|ref|NC_000913.2|_71351_72115		Uncharacterized membrane-associated protein		CDS	inner membrane protein yabI		yabI	
-	72229	72927	699	"Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ"	peg	gi|49175990|ref|NC_000913.2|_72927_72229		thiamine ABC transporter, ATP-binding protein		CDS	thiamine ABC transporter, ATP-binding protein	3.6.3.-	thiQ	
-	72911	74521	1611	"Thiamin ABC transporter, transmembrane component"	peg	gi|49175990|ref|NC_000913.2|_74521_72911		thiamine ABC transporter, permease protein		CDS	thiamine/thiamine pyrophosphate ABC transporter, permease protein		thiP	
-	74497	75480	984	"Thiamin ABC transporter, substrate-binding component"	peg	gi|49175990|ref|NC_000913.2|_75480_74497		thiamine ABC transporter, periplasmic binding protein		CDS	thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein		thiB	
-	75644	77299	1656	"SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA"	peg	gi|49175990|ref|NC_000913.2|_77299_75644		ABC-type uncharacterized transport system, periplasmic component		CDS	HTH-type transcriptional regulator sgrR		sgrR	
+	77367	77593	227										
+	77621	78799	1179	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_77621_78799		sugar efflux transporter		CDS	sugar efflux transporter A		setA	
-	78848	79453	606	3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)	peg	gi|49175990|ref|NC_000913.2|_79453_78848		3-isopropylmalate dehydratase, small subunit	4.2.1.33, 4.2.1.35	CDS	3-isopropylmalate dehydratase small subunit	4.2.1.33	leuD	
-	79464	80864	1401	3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)	peg	gi|49175990|ref|NC_000913.2|_80864_79464		3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33)	4.2.1.33, 4.2.1.35	CDS	3-isopropylmalate dehydratase large subunit	4.2.1.33	leuC	
-	80867	81958	1092	3-isopropylmalate dehydrogenase (EC 1.1.1.85)	peg	gi|49175990|ref|NC_000913.2|_81958_80867		3-isopropylmalate dehydrogenase	1.1.1.85	CDS	3-isopropylmalate dehydrogenase	1.1.1.85	leuB	
-	81958	83529	1572	2-isopropylmalate synthase (EC 2.3.3.13)	peg	gi|49175990|ref|NC_000913.2|_83529_81958		2-isopropylmalate synthase (EC 2.3.3.13)	2.3.3.13	CDS	2-isopropylmalate synthase	2.3.3.13	leuA	
+	84368	85312	945	Probable transcriptional activator for leuABCD operon	peg	gi|49175990|ref|NC_000913.2|_84368_85312		Transcriptional regulator		CDS	putative HTH-type transcriptional regulator leuO			
+	85630	87354	1725	Acetolactate synthase large subunit (EC 2.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_85654_87354		acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6	CDS	acetolactate synthase, large subunit, biosynthetic type	2.2.1.6	ilvB	
+	87327	87848	522	Acetolactate synthase small subunit (EC 2.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_87327_87848		acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	acetolactate synthase, small subunit	2.2.1.6	ilvN	
+	88028	89032	1005	"Fructose repressor FruR, LacI family"	peg	gi|49175990|ref|NC_000913.2|_88028_89032		transcriptional regulator, LacI family		CDS	fructose repressor		fruR	
+	89634	90092	459	Cell division protein MraZ	peg	gi|49175990|ref|NC_000913.2|_89634_90092		mraZ protein		CDS	mraZ family protein			
+	90094	91035	942	rRNA small subunit methyltransferase H	peg	gi|49175990|ref|NC_000913.2|_90094_91035		S-adenosyl-methyltransferase MraW	2.1.1.199	CDS	S-adenosyl-methyltransferase MraW	2.1.1.-	mraW	
+	91032	91397	366	Cell division protein FtsL	peg	gi|49175990|ref|NC_000913.2|_91032_91397		cell division protein FtsL		CDS	cell division protein FtsL		ftsL	
+	91413	93179	1767	Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129)	peg	gi|49175990|ref|NC_000913.2|_91413_93179		peptidoglycan synthetase FtsI (EC 2.4.1.129)	2.4.1.129	CDS	peptidoglycan synthase ftsI	2.4.1.129	ftsI	
+	93166	94653	1488	"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)"	peg	gi|49175990|ref|NC_000913.2|_93166_94653		UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	6.3.2.13	CDS	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	6.3.2.13	murE	
+	94650	96008	1359	"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10)"	peg	gi|49175990|ref|NC_000913.2|_94650_96008		UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	6.3.2.10	CDS	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	6.3.2.10	murF	
+	96002	97084	1083	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	peg	gi|49175990|ref|NC_000913.2|_96002_97084		Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	2.7.8.13	CDS	phospho-N-acetylmuramoyl-pentapeptide-transferase	2.7.8.13	mraY	
+	97087	98403	1317	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	peg	gi|49175990|ref|NC_000913.2|_97087_98403		UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	6.3.2.9	CDS	UDP-N-acetylmuramoylalanine--D-glutamate ligase	6.3.2.9	murD	
+	98403	99647	1245	Cell division protein FtsW	peg	gi|49175990|ref|NC_000913.2|_98403_99647		cell division-specific peptidoglycan biosynthesis regulator FtsW		CDS	cell division protein FtsW		ftsW	
+	99644	100711	1068	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227)	peg	gi|49175990|ref|NC_000913.2|_99668_100711		UDP-N-acetylglucosamine-N-acetylmuramylpentapeptide N-acetylglucosamine transferase	2.4.1.227	CDS	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	2.4.1.227	murG	
+	100765	102240	1476	UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8)	peg	gi|49175990|ref|NC_000913.2|_100765_102240		UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)	6.3.2.8	CDS	UDP-N-acetylmuramate--alanine ligase	6.3.2.8	murC	
+	102233	103153	921	D-alanine--D-alanine ligase (EC 6.3.2.4)	peg	gi|49175990|ref|NC_000913.2|_102233_103153		D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4	CDS	D-alanine--D-alanine ligase B	6.3.2.4	ddlB	
+	103155	103985	831	Cell division protein FtsQ	peg	gi|49175990|ref|NC_000913.2|_103155_103985		Cell division septal protein		CDS	cell division protein ftsQ		ftsQ	
+	103982	105244	1263	Cell division protein FtsA	peg	gi|49175990|ref|NC_000913.2|_103982_105244		cell division protein FtsA		CDS	cell division protein FtsA		ftsA	
+	105305	106456	1152	Cell division protein FtsZ (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_105305_106456		cell division protein FtsZ		CDS	cell division protein FtsZ		ftsZ	
+	106557	107474	918	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-)	peg	gi|49175990|ref|NC_000913.2|_106557_107474		UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108)	3.5.1.108	CDS	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	3.5.1.-	lpxC	
+	107630	108217	588	Secretion monitor precursor	peg	gi|49175990|ref|NC_000913.2|_107630_108217		protein translocase subunit secM		CDS	secretion monitor		secM	
+	108279	110984	2706	Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_108279_110984		protein translocase subunit secA		CDS	preprotein translocase, SecA subunit		secA	
+	111044	111433	390	"Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)"	peg	gi|49175990|ref|NC_000913.2|_111044_111433		8-oxo-dGTPase (EC 3.6.1.55)	3.6.1.-	CDS	mutator mutT protein	3.6.1.-	mutT	
-	111649	111846	198	FIG003276: zinc-binding protein	peg	gi|49175990|ref|NC_000913.2|_111846_111649		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	111856	112599	744	FIG002842: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_112599_111856		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	112599	113219	621	Dephospho-CoA kinase (EC 2.7.1.24)	peg	gi|49175990|ref|NC_000913.2|_113219_112599		dephospho-CoA kinase (EC 2.7.1.24)	2.7.1.24	CDS	dephospho-CoA kinase	2.7.1.24	coaE	
+	113444	114487	1044	GMP reductase (EC 1.7.1.7)	peg	gi|49175990|ref|NC_000913.2|_113444_114487		guanosine monophosphate reductase, eukaryotic	1.7.1.7	CDS	guanosine monophosphate reductase	1.7.1.7	guaC	
-	114522	115724	1203	Type IV fimbrial assembly protein PilC	peg	gi|49175990|ref|NC_000913.2|_115724_114522		Type II secretory pathway, component PulF		CDS	type II secretion system (T2SS), F family protein			
-	115714	117099	1386	"Type IV fimbrial assembly, ATPase PilB"	peg	gi|49175990|ref|NC_000913.2|_117099_115714		Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB		CDS	type II/IV secretion system family protein			
-	117109	117549	441	Type IV pilin PilA	peg	gi|49175990|ref|NC_000913.2|_117549_117109		prepilin-type N-terminal cleavage/methylation domain		CDS	prepilin-type N-terminal cleavage/methylation domain protein			
-	117752	118645	894	Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)	peg	gi|49175990|ref|NC_000913.2|_118645_117752		nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19)	2.4.2.19	CDS	nicotinate-nucleotide diphosphorylase	2.4.2.19	nadC	
+	118733	119284	552	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD	peg	gi|49175990|ref|NC_000913.2|_118733_119284		Negative regulator of beta-lactamase expression		CDS	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	3.5.1.28	ampD	
+	119281	120135	855	AmpE protein	peg	gi|49175990|ref|NC_000913.2|_119281_120135		Membrane protein required for beta-lactamase induction		CDS	protein AmpE		ampE	
-	120178	121548	1371	Aromatic amino acid transport protein AroP	peg	gi|49175990|ref|NC_000913.2|_121548_120178		aromatic amino acid:proton symporter, AAT family (TC 2.A.3.1.3)		CDS	aromatic amino acid transport protein AroP		aroP	
+	122092	122856	765	Transcriptional repressor for pyruvate dehydrogenase complex	peg	gi|49175990|ref|NC_000913.2|_122092_122856		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	123017	125680	2664	Pyruvate dehydrogenase E1 component (EC 1.2.4.1)	peg	gi|49175990|ref|NC_000913.2|_123017_125680		pyruvate dehydrogenase E1 component, homodimeric type	1.2.4.1	CDS	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	1.2.4.1	aceE	
+	125695	127587	1893	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)	peg	gi|49175990|ref|NC_000913.2|_125695_127587		pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form	2.3.1.12	CDS	dihydrolipoyllysine-residue acetyltransferase	2.3.1.12	aceF	
+	127879	129336	1458	Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)	peg	gi|49175990|ref|NC_000913.2|_127879_129336		dihydrolipoamide dehydrogenase	1.8.1.4	CDS	dihydrolipoyl dehydrogenase	1.8.1.4	lpdA	
-	129407	131260	1854	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_131260_129407		Protein of unknown function (DUF3300).		CDS	conserved hypothetical protein			
+	131615	134212	2598	Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)	peg	gi|49175990|ref|NC_000913.2|_131693_134212		aconitase (EC 4.2.1.3)	4.2.1.3, 4.2.1.99	CDS	aconitate hydratase 2	4.2.1.3	acnB	
+	134388	134750	363	FIG00638902: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_134388_134750		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	134788	135582	795	"S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A"	peg	gi|49175990|ref|NC_000913.2|_135582_134788		adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)	4.1.1.50	CDS	S-adenosylmethionine decarboxylase proenzyme	4.1.1.50	speD	
-	135598	136464	867	Spermidine synthase (EC 2.5.1.16)	peg	gi|49175990|ref|NC_000913.2|_136464_135598		spermidine synthase (EC 2.5.1.16)	2.5.1.16	CDS	spermidine synthase	2.5.1.16	speE	
-	136570	136917	348	"Predicted chaperone lipoprotein YacC, potentially involved in protein secretion"	peg	gi|49175990|ref|NC_000913.2|_136917_136570		Bacterial chaperone lipoprotein (PulS_OutS).		CDS	bacterial chaperone lipo family protein			
+	137083	138633	1551	Blue copper oxidase CueO precursor	peg	gi|49175990|ref|NC_000913.2|_137083_138633		cell division protein SufI		CDS	blue copper oxidase CueO		cueO	
-	138835	141225	2391	"Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2)"	peg	gi|49175990|ref|NC_000913.2|_141225_138835		membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	1.1.5.2	CDS	quinoprotein glucose dehydrogenase	1.1.5.2	gcd	
+	141431	141967	537	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	peg	gi|49175990|ref|NC_000913.2|_141431_141967		hypoxanthine phosphoribosyltransferase	2.4.2.8	CDS	hypoxanthine phosphoribosyltransferase	2.4.2.8	hpt	
-	142008	142670	663	Carbonic anhydrase (EC 4.2.1.1)	peg	gi|49175990|ref|NC_000913.2|_142670_142008		Carbonic anhydrase	4.2.1.1	CDS	carbonic anhydrase 2	4.2.1.1	can	
+	142779	143705	927	"ABC-type multidrug transport system, ATPase component"	peg	gi|49175990|ref|NC_000913.2|_142779_143705		ABC-type multidrug transport system, ATPase component		CDS	conserved hypothetical protein			
+	143702	144472	771	"ABC-type multidrug transport system, permease component"	peg	gi|49175990|ref|NC_000913.2|_143702_144472		ABC-type polysaccharide/polyol phosphate export systems, permease component		CDS	inner membrane transport permease yadH		yadH	
+	144577	145017	441	Putative PTS system IIA component yadI (EC 2.7.1.69)	peg	gi|49175990|ref|NC_000913.2|_144577_145017		Phosphotransferase system, mannose/fructose-specific component IIA	2.7.1.69	CDS	PTS system fructose IIA component family protein			
+	145081	146310	1230	Polysaccharide deacetylase	peg	gi|49175990|ref|NC_000913.2|_145081_146310		Predicted xylanase/chitin deacetylase		CDS	polysaccharide deacetylase family protein			
-	146314	146694	381	Aspartate 1-decarboxylase (EC 4.1.1.11)	peg	gi|49175990|ref|NC_000913.2|_146694_146314		L-aspartate 1-decarboxylase (EC 4.1.1.11)	4.1.1.11	CDS	aspartate 1-decarboxylase	4.1.1.11	panD	
+	146968	147870	903	Transposase ECs0136	peg	gi|49175990|ref|NC_000913.2|_146968_147870		conserved hypothetical protein (putative transposase or invertase)		CDS	conserved hypothetical family protein			
-	147944	148795	852	Pantoate--beta-alanine ligase (EC 6.3.2.1)	peg	gi|49175990|ref|NC_000913.2|_148795_147944		pantothenate synthetase (EC 6.3.2.1)	6.3.2.1	CDS	pantoate--beta-alanine ligase	6.3.2.1	panC	
-	148807	149601	795	3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11)	peg	gi|49175990|ref|NC_000913.2|_149601_148807		ketopantoate hydroxymethyltransferase (EC 2.1.2.11)	2.1.2.11	CDS	3-methyl-2-oxobutanoate hydroxymethyltransferase	2.1.2.11	panB	
-	149715	150953	1239	Fimbrial protein YadC	peg	gi|49175990|ref|NC_000913.2|_150953_149715		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	151003	151599	597	Fimbrial protein YadK	peg	gi|49175990|ref|NC_000913.2|_151599_151003		P pilus assembly protein, pilin FimA		CDS	conserved hypothetical protein			
-	151626	152231	606	Fimbrial protein YadL	peg	gi|49175990|ref|NC_000913.2|_152231_151626		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	152243	152812	570	Fimbrial protein YadM	peg	gi|49175990|ref|NC_000913.2|_152626_152243		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	152829	155426	2598	Outer membrane usher protein HtrE	peg	gi|49175990|ref|NC_000913.2|_155426_152829		P pilus assembly protein, porin PapC		CDS	outer membrane usher protein htrE		htrE	
-	155461	156201	741	Chaperone protein EcpD	peg	gi|49175990|ref|NC_000913.2|_156201_155461		P pilus assembly protein, chaperone PapD		CDS	gram-negative pili assembly chaperone, C-terminal domain protein			
-	156299	156883	585	Fimbrial protein YadN	peg	gi|49175990|ref|NC_000913.2|_156883_156299		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	157253	157732	480	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3)	peg	gi|49175990|ref|NC_000913.2|_157732_157253		2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2.7.6.3	CDS	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	2.7.6.3	folK	
-	157729	159093	1365	Poly(A) polymerase (EC 2.7.7.19)	peg	gi|49175990|ref|NC_000913.2|_159093_157729		poly(A) polymerase	2.7.7.19	CDS	poly(A) polymerase	2.7.7.19	pcnB	
-	159186	160112	927	glutamyl-Q-tRNA synthetase	peg	gi|49175990|ref|NC_000913.2|_160112_159186		glutamyl-queuosine tRNA(Asp) synthetase	6.1.1.-	CDS	glutamyl-queuosine tRNA(Asp) synthetase	6.1.1.-	gluQ	
-	160149	160604	456	"C4-type zinc finger protein, DksA/TraR family"	peg	gi|49175990|ref|NC_000913.2|_160604_160149		transcriptional regulator, TraR/DksA family		CDS	RNA polymerase-binding protein DksA		dksA	
-	160782	161486	705	Sugar/maltose fermentation stimulation protein homolog	peg	gi|49175990|ref|NC_000913.2|_161486_160782		sugar fermentation stimulation protein		CDS	sugar fermentation stimulation protein		sfsA	
-	161501	162031	531	COG1514: 2'-5' RNA ligase	peg	gi|49175990|ref|NC_000913.2|_162031_161501		2'-5' RNA ligase	6.5.1.-	CDS	2'-5' RNA ligase	6.5.1.-		
+	162060	164534	2475	ATP-dependent helicase HrpB	peg	gi|49175990|ref|NC_000913.2|_162060_164534		ATP-dependent helicase HrpB	3.6.4.13	CDS	ATP-dependent helicase HrpB	3.6.4.-	hrpB	
+	164730	167264	2535	Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	peg	gi|49175990|ref|NC_000913.2|_164730_167264		penicillin-binding protein 1B	2.4.1.129, 3.4.-	CDS	penicillin-binding protein 1B		mrcB	
+	167484	169727	2244	Ferric hydroxamate outer membrane receptor FhuA	peg	gi|49175990|ref|NC_000913.2|_167484_169727		TonB-dependent siderophore receptor		CDS	ferrichrome-iron receptor		fhuA	
+	169778	170575	798	"Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC"	peg	gi|49175990|ref|NC_000913.2|_169778_170575		ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34	CDS	iron(3+)-hydroxamate import ATP-binding protein FhuC	3.6.3.34	fhuC	
+	170575	171465	891	"Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD"	peg	gi|49175990|ref|NC_000913.2|_170575_171465		ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	iron(3+)-hydroxamate-binding protein fhuD		fhuD	
+	171462	173444	1983	"Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB"	peg	gi|49175990|ref|NC_000913.2|_171462_173444		ABC-type Fe3+-siderophore transport system, permease component		CDS	iron(3+)-hydroxamate import system permease protein fhuB		fhuB	
-	173602	174882	1281	Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)	peg	gi|49175990|ref|NC_000913.2|_174882_173602		glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	5.4.3.8	CDS	glutamate-1-semialdehyde-2,1-aminomutase	5.4.3.8	hemL	
+	175107	176528	1422	H(+)/Cl(-) exchange transporter ClcA	peg	gi|49175990|ref|NC_000913.2|_175107_176528		Chloride channel protein EriC		CDS	H(+)/Cl(-) exchange transporter ClcA		clcA	
+	176610	176954	345	"ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family"	peg	gi|49175990|ref|NC_000913.2|_176610_176954		Iron-sulfur cluster assembly accessory protein		CDS	iron-sulfur cluster insertion protein erpA		erpA	
-	177001	177624	624	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_177624_177001		Predicted membrane protein		CDS	conserved hypothetical protein			
-	177662	178462	801	"Vitamin B12 ABC transporter, B12-binding component BtuF"	peg	gi|49175990|ref|NC_000913.2|_178462_177662		ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	vitamin B12-binding protein		btuF	
-	178455	179153	699	5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)	peg	gi|49175990|ref|NC_000913.2|_179153_178455		methylthioadenosine nucleosidase (EC 3.2.2.16)/adenosylhomocysteine nucleosidase (EC 3.2.2.9)	3.2.2.9	CDS	MTA/SAH nucleosidase	3.2.2.16	mtnN	
+	179237	180754	1518	"Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), subgroup 1"	peg	gi|49175990|ref|NC_000913.2|_179237_180754		deoxyguanosinetriphosphate triphosphohydrolase, putative	3.1.5.1	CDS	deoxyguanosinetriphosphate triphosphohydrolase	3.1.5.1	dgt	
+	180884	182308	1425	HtrA protease/chaperone protein	peg	gi|49175990|ref|NC_000913.2|_180884_182308		peptidase Do (EC 3.4.21.107). Serine peptidase. MEROPS family S01B		CDS	protease do	3.4.21.-	degP	
+	182463	183620	1158	Sugar diacid utilization regulator SdaR	peg	gi|49175990|ref|NC_000913.2|_182463_183620		transcriptional regulator, CdaR family		CDS	carbohydrate diacid regulator		cdaR	
-	183709	184095	387	Chromosome segregation ATPase	peg	gi|49175990|ref|NC_000913.2|_184095_183709		Protein of unknown function (DUF3461).		CDS	conserved hypothetical protein			
-	184257	185000	744	Phosphoesterase (EC 3.1.-.-)	peg	gi|49175990|ref|NC_000913.2|_185000_184257		Predicted phosphohydrolases		CDS	calcineurin-like phosphoesterase family protein			
-	185123	185947	825	"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)"	peg	gi|49175990|ref|NC_000913.2|_185947_185123		2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)	2.3.1.117	CDS	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	2.3.1.117	dapD	
-	185978	188650	2673	[Protein-PII] uridylyltransferase (EC 2.7.7.59)	peg	gi|49175990|ref|NC_000913.2|_188650_185978		UTP--GlnB (protein PII) uridylyltransferase, GlnD	2.7.7.59	CDS	protein-P-II uridylyltransferase	2.7.7.59	glnD	
-	188712	189506	795	Methionine aminopeptidase (EC 3.4.11.18)	peg	gi|49175990|ref|NC_000913.2|_189506_188712		methionine aminopeptidase, type I (EC 3.4.11.18)	3.4.11.18	CDS	methionine aminopeptidase, type I	3.4.11.18	map	
-	190551	190838	288	FIG00637992: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_190802_190551					putative predicted protein			
+	189874	190599	726	SSU ribosomal protein S2p (SAe)	peg	gi|49175990|ref|NC_000913.2|_189874_190599		SSU ribosomal protein S2P		CDS	ribosomal protein S2		rpsB	
+	190857	191708	852	Translation elongation factor Ts	peg	gi|49175990|ref|NC_000913.2|_190857_191708		translation elongation factor Ts (EF-Ts)		CDS	translation elongation factor Ts		tsf	
+	191855	192580	726	Uridylate kinase (EC 2.7.4.-)	peg	gi|49175990|ref|NC_000913.2|_191855_192580		uridylate kinase (EC 2.7.4.22)	2.7.4.22	CDS	UMP kinase	2.7.4.22	pyrH	
+	192872	193429	558	Ribosome recycling factor	peg	gi|49175990|ref|NC_000913.2|_192872_193429		ribosome recycling factor		CDS	ribosome recycling factor		frr	
+	193521	194717	1197	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	peg	gi|49175990|ref|NC_000913.2|_193521_194717		1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	1.1.1.267	CDS	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	dxr	
+	194903	195664	762	Undecaprenyl diphosphate synthase (EC 2.5.1.31)	peg	gi|49175990|ref|NC_000913.2|_194903_195664		Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31)	2.5.1.31	CDS	di-trans,poly-cis-decaprenylcistransferase	2.5.1.31	uppS	
+	195664	195816	153	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_195664_195816		hypothetical protein		CDS	phosphatidate cytidylyltransferase domain protein	2.7.7.41	cdsA	
+	195785	196534	750	Phosphatidate cytidylyltransferase (EC 2.7.7.41)	peg	gi|49175990|ref|NC_000913.2|_195785_196534		CDP-diglyceride synthetase	2.7.7.41	CDS	phosphatidate cytidylyltransferase	2.7.7.41	cdsA	
+	196546	197898	1353	"Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage"	peg	gi|49175990|ref|NC_000913.2|_196546_197898		site-2 protease. Metallo peptidase. MEROPS family M50B	3.4.24.-	CDS	RIP metalloprotease RseP	3.4.24.-	rseP	
+	197928	200360	2433	Outer membrane protein assembly factor YaeT precursor	peg	gi|49175990|ref|NC_000913.2|_197928_200360		Beta-barrel assembly machine subunit BamA		CDS	outer membrane assembly complex, YaeT protein		yaeT	
+	200482	200967	486	Outer membrane protein H precursor	peg	gi|49175990|ref|NC_000913.2|_200482_200967		periplasmic chaperone for outer membrane proteins Skp		CDS	chaperone protein skp		skp	
+	200971	201996	1026	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_200971_201996		UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191)	2.3.1.191	CDS	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	2.3.1.-	lpxD	
+	202101	202556	456	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_202101_202556		3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-)	4.2.1.-	CDS	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	4.2.1.-	fabZ	
+	202560	203348	789	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129)	peg	gi|49175990|ref|NC_000913.2|_202560_203348		acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129)	2.3.1.129	CDS	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase	2.3.1.129	lpxA	
+	203348	204496	1149	Lipid-A-disaccharide synthase (EC 2.4.1.182)	peg	gi|49175990|ref|NC_000913.2|_203348_204496		lipid-A-disaccharide synthase (EC 2.4.1.182)	2.4.1.182	CDS	lipid-A-disaccharide synthase	2.4.1.182	lpxB	
+	204493	205089	597	Ribonuclease HII (EC 3.1.26.4)	peg	gi|49175990|ref|NC_000913.2|_204493_205089		RNase HII (EC 3.1.26.4)	3.1.26.4	CDS	ribonuclease HII	3.1.26.4	rnhB	
+	205126	208608	3483	DNA polymerase III alpha subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_205126_208608		DNA polymerase III, alpha subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III subunit alpha	2.7.7.7	dnaE	
+	208621	209580	960	Acetyl-coenzyme A carboxyl transferase alpha chain (EC 6.4.1.2)	peg	gi|49175990|ref|NC_000913.2|_208621_209580		acetyl-CoA carboxylase carboxyltransferase subunit alpha	6.4.1.2	CDS	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	6.4.1.2	accA	
+	209679	211820	2142	"Lysine decarboxylase 2, constitutive (EC 4.1.1.18)"	peg	gi|49175990|ref|NC_000913.2|_209679_211820		L-lysine decarboxylase (EC 4.1.1.18)	4.1.1.18	CDS	lysine decarboxylase, constitutive	4.1.1.18	ldcC	
+	211877	212266	390	FIG01280259: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_211877_212266		Lactoylglutathione lyase and related lyases		CDS	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			
+	212331	213629	1299	tRNA(Ile)-lysidine synthetase	peg	gi|49175990|ref|NC_000913.2|_212331_213629		tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain		CDS	tRNA(Ile)-lysidine synthase	6.3.4.-	tilS	
-	213678	213938	261	Rho-specific inhibitor of transcription termination (YaeO)	peg	gi|49175990|ref|NC_000913.2|_213932_213678		transcriptional antiterminator, Rof		CDS	protein rof		rof	
-	213925	214125	201	FIG00905232: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_214125_213925		Uncharacterised protein family (UPF0253).		CDS	conserved hypothetical protein			
+	214291	214836	546	YaeQ protein	peg	gi|49175990|ref|NC_000913.2|_214291_214836		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	214833	215255	423	Hypothetical protein YaeJ with similarity to translation release factor	peg	gi|49175990|ref|NC_000913.2|_214833_215255		Protein chain release factor B		CDS	peptidyl-tRNA hydrolase domain protein			
+	215269	215979	711	Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion	peg	gi|49175990|ref|NC_000913.2|_215269_215979		Uncharacterized lipoprotein NlpE involved in copper resistance		CDS	lipoprotein NlpE		nlpE	
-	216179	217003	825	Uncharacterized lipoprotein yaeF precursor	peg	gi|49175990|ref|NC_000913.2|_217003_216179		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	nlpC/P60 family protein			
-	217057	218775	1719	"Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type"	peg	gi|49175990|ref|NC_000913.2|_218775_217057		prolyl-tRNA synthetase (EC 6.1.1.15)	6.1.1.15	CDS	proline--tRNA ligase	6.1.1.15	proS	
-	218887	219594	708	COG1720: Uncharacterized conserved protein	peg	gi|49175990|ref|NC_000913.2|_219594_218887		putative methyltransferase, YaeB/AF_0241 family		CDS	conserved hypothetical protein			
-	219591	219995	405	Protein RcsF	peg	gi|49175990|ref|NC_000913.2|_219944_219591		hypothetical protein		CDS	protein rcsF		rcsF	
-	220113	220928	816	Methionine ABC transporter substrate-binding protein	peg	gi|49175990|ref|NC_000913.2|_220928_220113		lipoprotein, YaeC family		CDS	D-methionine-binding lipoprotein metQ		metQ	
-	220968	221621	654	Methionine ABC transporter permease protein	peg	gi|49175990|ref|NC_000913.2|_221621_220968		ABC-type metal ion transport system, permease component		CDS	D-methionine transport system permease protein metI		metI	
-	221614	222645	1032	Methionine ABC transporter ATP-binding protein	peg	gi|49175990|ref|NC_000913.2|_222645_221614		D-methionine ABC transporter, ATP-binding protein		CDS	D-methionine ABC transporter, ATP-binding protein	3.6.3.-	metN	
+	222833	223408	576	"D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-)"	peg	gi|49175990|ref|NC_000913.2|_222833_223408		D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)	3.1.3.83, 3.1.3.82	CDS	D,D-heptose 1,7-bisphosphate phosphatase	3.1.3.-	gmhB	
+	223789	225212	1424										
+	223771	225312	1542										
+	225762	228661	2900										
+	225759	228682	2924										
-	229967	230881	915	LysR family transcriptional regulator YafC	peg	gi|49175990|ref|NC_000913.2|_230881_229967		transcriptional regulator, LysR family		CDS	conserved hypothetical protein			
+	229167	229970	804	"Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274)"	peg	gi|49175990|ref|NC_000913.2|_229167_229970		Aldo/keto reductases, related to diketogulonate reductase	1.1.1.274	CDS	2,5-diketo-D-gluconic acid reductase B	1.1.1.274	dkgB	
+	231122	231922	801	FIG00613320: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_231122_231922		Uncharacterized protein conserved in bacteria		CDS	endonuclease/Exonuclease/phosphatase family protein			
+	231926	232549	624	SAM-dependent methyltransferase YafE (UbiE paralog)	peg	gi|49175990|ref|NC_000913.2|_231926_232549		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
-	232597	233817	1221	Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_233817_232597		Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	membrane-bound lytic murein transglycosylase D	4.2.2.n1	mltD	
-	234027	234782	756	Hydroxyacylglutathione hydrolase (EC 3.1.2.6)	peg	gi|49175990|ref|NC_000913.2|_234782_234027		hydroxyacylglutathione hydrolase	3.1.2.6	CDS	hydroxyacylglutathione hydrolase	3.1.2.6	gloB	
-	235535	236002	468	Ribonuclease HI (EC 3.1.26.4)	peg	gi|49175990|ref|NC_000913.2|_236002_235535		RNase HI (EC 3.1.26.4)	3.1.26.4	CDS	RNase H family protein			
+	234816	235538	723	FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_234816_235538		Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	methyltransferase domain protein			
+	236058	236798	741	DNA polymerase III epsilon subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_236067_236798		DNA polymerase III, epsilon subunit, Proteobacterial	2.7.7.7	CDS	DNA polymerase III, epsilon subunit	2.7.7.7	dnaQ	
+	237335	238120	786	putative aminopeptidase	peg	gi|49175990|ref|NC_000913.2|_237335_238120		hypothetical protein		CDS	putative aminopeptidase			
-	238257	238736	480				hypothetical protein		CDS				
-	238746	239084	339				hypothetical protein		CDS				
+	239184	239378	195	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_239184_239378					H repeat-associated yhhI domain protein		yhhI	
-	239419	240189	771	Omega amidase (Nit2 homolog)	peg	gi|49175990|ref|NC_000913.2|_240189_239419		Predicted amidohydrolase		CDS	carbon-nitrogen hydrolase family protein			
+	240367	240816	450	Inhibitor of vertebrate lysozyme precursor	peg	gi|49175990|ref|NC_000913.2|_240367_240816		Inhibitor of vertebrate lysozyme (Ivy).		CDS	inhibitor of vertebrate lysozyme		ivy	
-	240859	243303	2445	acyl-CoA dehydrogenase	peg	gi|49175990|ref|NC_000913.2|_243303_240859		Acyl-CoA dehydrogenases	1.3.99.-	CDS	acyl-CoA dehydrogenase, C-terminal domain protein			
+	243543	244121	579	Phosphoheptose isomerase 1 (EC 5.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_243543_244121		phosphoheptose isomerase (EC 5.3.1.-)	5.3.1.28	CDS	phosphoheptose isomerase	5.3.1.28	gmhA	
-	245065	245805	741	probable exported protein STY0357	peg	gi|49175990|ref|NC_000913.2|_245805_245065		Uncharacterized protein conserved in bacteria		CDS	L,D-transpeptidase catalytic domain protein			
+	244327	245094	768	Predicted glutamine amidotransferase	peg	gi|49175990|ref|NC_000913.2|_244327_245094		Predicted glutamine amidotransferase		CDS	glutamine amidotransferase domain protein			
-	245961	246239	279	YafQ toxin protein	peg	gi|49175990|ref|NC_000913.2|_246155_245961		addiction module toxin component, YafQ family/addiction module toxin, RelE/StbE family		CDS	mRNA interferase YafQ	3.1.-.-	yafQ	
-	246242	246502	261	DNA-damage-inducible protein J	peg	gi|49175990|ref|NC_000913.2|_246502_246242		addiction module antitoxin, RelB/DinJ family		CDS	antitoxin DinJ		dinJ	
-	246630	246797	168	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_246797_246630								
+	246712	247461	750	Hypothetical lipoprotein yafL precursor	peg	gi|49175990|ref|NC_000913.2|_246712_247461		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	conserved hypothetical protein			
+	247637	248134	498	Transposase and inactivated derivatives	peg	gi|49175990|ref|NC_000913.2|_247637_248134		Transposase and inactivated derivatives		CDS	conserved hypothetical protein			
-	248358	250097	1740	Flagellar biosynthesis protein FlhA	peg	gi|49175990|ref|NC_000913.2|_250097_248358		Flagellar biosynthesis pathway, component FlhA		CDS	FHIPEP family protein			
+	250057	250827	771	Flagellar motor rotation protein MotB	peg	gi|49175990|ref|NC_000913.2|_250057_250827		Flagellar motor protein		CDS	ompA family protein			
+	250898	251953	1056	DNA polymerase IV (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_250898_251953		Nucleotidyltransferase/DNA polymerase involved in DNA repair	2.7.7.7	CDS	DNA polymerase IV	2.7.7.7	dinB	
+	252005	252298	294	Antitoxin YafN	peg	gi|49175990|ref|NC_000913.2|_252005_252298		Antitoxin of toxin-antitoxin stability system		CDS	antitoxin YafN		yafN	
+	252301	252699	399	Toxin YafO	peg	gi|49175990|ref|NC_000913.2|_252301_252699		Toxin YafO, type II toxin-antitoxin system.		CDS	mRNA interferase YafO	3.1.-.-	yafO	
+	252787	253161	375	Uncharacterized acetyltransferase YafP (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_252787_253161		Acetyltransferase, GNAT family	2.3.1.-	CDS	acetyltransferase family protein			
+	253467	253733	267	Protein with similarity to RtcB	peg	gi|49175990|ref|NC_000913.2|_253479_253733		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	253702	254202	501	Peptide chain release factor homolog	peg	gi|49175990|ref|NC_000913.2|_253702_254202		putative peptide chain release factor H		CDS	putative peptide chain release factor H			
-	254259	255716	1458	Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)	peg	gi|49175990|ref|NC_000913.2|_255716_254259		Xaa-His dipeptidase (EC:3.4.13.3). Metallo peptidase. MEROPS family M20C	3.4.13.-	CDS	aminoacyl-histidine dipeptidase		pepD	
+	255977	256435	459	Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22)	peg	gi|49175990|ref|NC_000913.2|_255977_256435		Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	2.4.2.22	CDS	xanthine phosphoribosyltransferase	2.4.2.22	gpt	
+	256527	257771	1245	FIG01200175: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_256527_257771		Dienelactone hydrolase and related enzymes	3.1.-	CDS	alpha/beta hydrolase family protein			
+	257829	258230	402	Curlin genes transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_257829_258230		Transcriptional regulator Crl.		CDS	sigma factor-binding protein crl		crl	
-	258269	259324	1056	Outer membrane pore protein E precursor	peg	gi|49175990|ref|NC_000913.2|_259324_258269		Outer membrane protein (porin)		CDS	outer membrane pore protein E		phoE	
+	259612	260715	1104	Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA	peg	gi|49175990|ref|NC_000913.2|_259612_260715		glutamate 5-kinase (EC 2.7.2.11)	2.7.2.11	CDS	glutamate 5-kinase	2.7.2.11	proB	
+	260727	261980	1254	Gamma-glutamyl phosphate reductase (EC 1.2.1.41)	peg	gi|49175990|ref|NC_000913.2|_260727_261980		glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41)	1.2.1.41	CDS	gamma-glutamyl phosphate reductase	1.2.1.41	proA	
-	262552	262893	342	YpjF toxin protein	peg	gi|49175990|ref|NC_000913.2|_262893_262552		Protein of unknown function (DUF1219).		CDS	toxin YkfI		ykfI	
-	262914	263231	318	YfjZ protein (antitoxin to YpjF)	peg	gi|49175990|ref|NC_000913.2|_263171_262914		YagB/YeeU/YfjZ family.		CDS	putative antitoxin YfjZ			
-	263250	263471	222	Uncharacterized protein YeeT	peg	gi|49175990|ref|NC_000913.2|_263471_263250		Protein of unknown function (DUF987).		CDS	conserved hypothetical protein			
-	263480	263956	477	DNA repair protein RadC	peg	gi|49175990|ref|NC_000913.2|_263956_263480		DNA repair protein radc		CDS	conserved hypothetical protein			
-	263972	264430	459	Antirestriction protein klcA	peg	gi|49175990|ref|NC_000913.2|_264430_263972		Antirestriction protein.		CDS	intergenic-region protein			
-	264528	264767	240	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_264767_264528		Bacterial protein of unknown function (DUF905).		CDS	conserved hypothetical protein			
-	264844	265311	468	Intergenic-region protein	peg	gi|49175990|ref|NC_000913.2|_265311_264844		hypothetical protein		CDS	conserved hypothetical protein			
-	265334	266191	858	FIG00641766: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_265777_265334		Predicted transcriptional regulator		CDS	conserved hypothetical protein			
-	265777	265953	177	predicted inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_265953_265777					putative membrane protein			
-	266408	267229	822	FIG01224161: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_267229_266408		Domain of unknown function (DUF932).		CDS	conserved hypothetical protein			
-	267321	268184	864	NgrB	peg	gi|49175990|ref|NC_000913.2|_268184_267321		Predicted GTPase		CDS	50S ribosome-binding GTPase family protein			
-	268513	269406	894	LysR family transcriptional regulator PerR	peg	gi|49175990|ref|NC_000913.2|_269406_268513		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	269502	269870	369	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_269502_269870		Transposase and inactivated derivatives		CDS	transposase family protein			
+	269827	270978	1152	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_269827_270978		Transposase and inactivated derivatives, IS30 family		CDS	integrase core domain protein			
+	271054	271479	426	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_271240_271479		hypothetical protein		CDS	HTH-like domain protein			
+	272071	273216	1146	Retron-type RNA-directed DNA polymerase (EC 2.7.7.49)	peg	gi|49175990|ref|NC_000913.2|_272071_273216		Retron-type reverse transcriptase		CDS	reverse transcriptase family protein			
-	273325	274341	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_274341_273325		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
+	274525	275952	1428	S-methylmethionine permease	peg	gi|49175990|ref|NC_000913.2|_274549_275952		S-methylmethionine:proton symporter, AAT family (TC 2.A.3.1.10)		CDS	amino acid permease family protein			
+	275939	276871	933	Homocysteine S-methyltransferase (EC 2.1.1.10)	peg	gi|49175990|ref|NC_000913.2|_275939_276871		homocysteine S-methyltransferase (EC 2.1.1.10)	2.1.1.10	CDS	homocysteine S-methyltransferase	2.1.1.10	mmuM	
-	276980	278026	1047	ABC transporter ATP-binding protein	peg	gi|49175990|ref|NC_000913.2|_278026_276980		ABC-type spermidine/putrescine transport systems, ATPase components	3.6.3.30	CDS	ABC transporter family protein			
-	278038	278400	363	"Ferric iron ABC transporter, permease protein"	peg	gi|49175990|ref|NC_000913.2|_278400_278038		ABC-type Fe3+ transport system, permease component		CDS	binding--dependent transport system inner membrane component family protein			
-	278402	278905	504	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_278905_278402		Transposase and inactivated derivatives, IS1 family		CDS	putative transposase			
-	278824	279099	276				Transposase and inactivated derivatives		CDS				
-	279248	279586	339	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_279586_279248		Transposase and inactivated derivatives		CDS	transposase family protein			
-	279609	279959	351	putative structure	peg	gi|49175990|ref|NC_000913.2|_279890_279609		YagB/YeeU/YfjZ family.		CDS	putative antitoxin YfjZ			
-	280053	281195	1143	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_281195_280053		Transposase and inactivated derivatives		CDS	conserved hypothetical protein			
+	281502	282410	909	Dihydrodipicolinate synthase (EC 4.2.1.52) homolog	peg	gi|49175990|ref|NC_000913.2|_281502_282410		Dihydrodipicolinate synthase/N-acetylneuraminate lyase	4.2.1.52	CDS	conserved hypothetical protein			
+	282425	284392	1968	Dihydroxy-acid dehydratase (EC 4.2.1.9)	peg	gi|49175990|ref|NC_000913.2|_282425_284392		putative dehydratase, YjhG/YagF family		CDS	conserved hypothetical protein			
+	284619	286001	1383	Xyloside transporter XynT	peg	gi|49175990|ref|NC_000913.2|_284619_286001		sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	inner membrane symporter yicJ		yicJ	
+	286013	287623	1611	Beta-xylosidase (EC 3.2.1.37)	peg	gi|49175990|ref|NC_000913.2|_286013_287623		Beta-xylosidase	3.2.1.37	CDS	beta-xylosidase	3.2.1.37	xynB	
-	287628	288386	759	"Transcriptional regulator, IclR family"	peg	gi|49175990|ref|NC_000913.2|_288386_287628		transcriptional regulator, IclR family		CDS	bacterial transcriptional regulator family protein			
-	288525	289529	1005	Ornithine carbamoyltransferase (EC 2.1.3.3)	peg	gi|49175990|ref|NC_000913.2|_289529_288525		ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3	CDS	ornithine carbamoyltransferase	2.1.3.3	argF	
-	289873	290376	504	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_290376_289873		Transposase and inactivated derivatives, IS1 family		CDS	putative transposase			
-	290295	290570	276				Transposase and inactivated derivatives		CDS				
+	290724	291455	732	FIG00640257: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_290724_291455		hypothetical protein		CDS	putative cP4-6 prophage; predicted protein			
-	291546	292172	627	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_291977_291546		Protein of unknown function (DUF3296).		CDS	conserved hypothetical protein			
-	292444	293142	699	DNA-binding protein	peg	gi|49175990|ref|NC_000913.2|_293142_292444		Site-specific recombinases, DNA invertase Pin homologs		CDS	resolvase, N terminal domain protein			
-	293169	294023	855	FIG00639014: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_294023_293169		hypothetical protein		CDS	conserved hypothetical protein			
-	294142	294366	225	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_294366_294142		hypothetical protein		CDS	conserved hypothetical protein			
-	294363	294803	441				hypothetical protein		CDS				
-	294920	296245	1326	CP4-6 prophage; predicted phage integrase	peg	gi|49175990|ref|NC_000913.2|_296245_294920		Site-specific recombinase XerD		CDS	phage integrase family protein			
-	296605	297015	411	Transcriptional regulator	peg	gi|49175990|ref|NC_000913.2|_297015_296605		Transcriptional regulator		CDS				
-	296994	297950	957	Hypothetical protein YagQ	peg	gi|49175990|ref|NC_000913.2|_297950_296994		Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family		CDS	xdhC and CoxI family protein			
-	297960	300158	2199	"Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR"	peg	gi|49175990|ref|NC_000913.2|_300158_297960		xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC 1.17.1.4)	1.17.1.4	CDS	molybdopterin-binding domain of aldehyde dehydrogenase family protein			
-	300155	301111	957	"Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS"	peg	gi|49175990|ref|NC_000913.2|_301111_300155		Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs	1.17.1.4	CDS	FAD binding domain in molybdopterin dehydrogenase family protein			
-	301108	301797	690	"Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT"	peg	gi|49175990|ref|NC_000913.2|_301797_301108		Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs		CDS	putative xanthine dehydrogenase yagT iron-sulfur-binding subunit			
+	302215	302829	615	DUF1440 domain-containing membrane protein	peg	gi|49175990|ref|NC_000913.2|_302215_302829		Predicted periplasmic/secreted protein		CDS	inner membrane protein yagU		yagU	
-	303719	304429	711	CFA/I fimbrial chaperone	peg	gi|49175990|ref|NC_000913.2|_304429_303719		Gram-negative pili assembly chaperone, N-terminal domain.		CDS	gram-negative pili assembly chaperone, N-terminal domain protein			
-	304398	306041	1644	CFA/I fimbrial minor adhesin	peg	gi|49175990|ref|NC_000913.2|_305969_304398		hypothetical protein		CDS	putative receptor			
-	306031	308556	2526	CFA/I fimbrial subunit C usher protein	peg	gi|49175990|ref|NC_000913.2|_308556_306031		hypothetical protein		CDS	conserved hypothetical protein			
-	308582	309250	669	CFA/I fimbrial auxiliary subunit	peg	gi|49175990|ref|NC_000913.2|_309250_308582		hypothetical protein		CDS	conserved hypothetical protein			
-	309308	309895	588	CFA/I fimbrial major subunit	peg	gi|49175990|ref|NC_000913.2|_309895_309308		hypothetical protein		CDS	fimbrillin matB		matB	
-	309970	310512	543	FIGfam014588: Predicted regulator of CFA/I fimbriae	peg	gi|49175990|ref|NC_000913.2|_310173_309970		DNA-binding HTH domain-containing proteins		CDS	bacterial regulatory s, luxR family protein			
-	311738	312004	267	"LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent"	peg	gi|49175990|ref|NC_000913.2|_312001_311738		LSU ribosomal protein L31P		CDS	ribosomal protein L31		rpmE	
+	313581	314468	888	Putative adhesin	peg	gi|49175990|ref|NC_000913.2|_313581_314468		Protein of unknown function (DUF3442).		CDS	conserved hypothetical protein			
+	314515	314814	300	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_314515_314814		Transposase.		CDS	transposase family protein			
-	315674	316360	687	Transcriptional regulator YkgA	peg	gi|49175990|ref|NC_000913.2|_316144_315674		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
+	314811	315677	867	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_314811_315677		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	316950	317543	594	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_317543_316950		Predicted membrane protein		CDS	inner membrane protein ykgB		ykgB	
-	317555	317791	237	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_317791_317555					conserved hypothetical protein			
-	317900	319225	1326	"Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase"	peg	gi|49175990|ref|NC_000913.2|_319225_317900		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes		CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	319451	320305	855	Putative HTH-type transcriptional regulator ykgD	peg	gi|49175990|ref|NC_000913.2|_319451_320305		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	320463	320633	171	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_320633_320463					conserved hypothetical protein			
+	320832	321551	720	"Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE"	peg	gi|49175990|ref|NC_000913.2|_320832_321551		Fe-S oxidoreductase		CDS	cysteine-rich domain protein			
+	321562	322989	1428	"Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF"	peg	gi|49175990|ref|NC_000913.2|_321562_322989		iron-sulfur cluster-binding protein		CDS	iron-sulfur cluster-binding protein			
+	322982	323677	696	"Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG"	peg	gi|49175990|ref|NC_000913.2|_322982_323677		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	323920	324588	669	FIG00639487: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_324588_323920		G-rich domain on putative tyrosine kinase.		CDS	G-rich domain on tyrosine kinase family protein			
-	324801	326471	1671	Choline dehydrogenase (EC 1.1.99.1)	peg	gi|49175990|ref|NC_000913.2|_326471_324801		choline dehydrogenase (EC 1.1.99.1)	1.1.99.1	CDS	choline dehydrogenase	1.1.99.1	betA	
-	326485	327957	1473	Betaine aldehyde dehydrogenase (EC 1.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_327957_326485		betaine aldehyde dehydrogenase (EC 1.2.1.8)	1.2.1.8	CDS	betaine aldehyde dehydrogenase	1.2.1.8	betB	
-	327971	328558	588	HTH-type transcriptional regulator BetI	peg	gi|49175990|ref|NC_000913.2|_328558_327971		transcriptional regulator, TetR family		CDS	transcriptional repressor BetI		betI	
+	328687	330720	2034	High-affinity choline uptake protein BetT	peg	gi|49175990|ref|NC_000913.2|_328687_330720		choline/carnitine/betaine transport		CDS	transporter, betaine/carnitine/choline transporter family protein			
+	331595	332683	1089	FIG00638331: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_331595_332683		FOG: EAL domain		CDS	cyclic di-GMP phosphodiesterase yahA	3.1.4.-	yahA	
-	332725	333657	933	Putative HTH-type transcriptional regulator yahB	peg	gi|49175990|ref|NC_000913.2|_333657_332725		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	333749	334246	498	FIG00638603: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_334246_333749		Protein of unknown function (DUF1097).		CDS	conserved hypothetical protein			
+	334504	335109	606	Putative transcription factor	peg	gi|49175990|ref|NC_000913.2|_334504_335109		FOG: Ankyrin repeat		CDS	ankyrin repeat family protein			
-	335158	335463	306							conserved hypothetical protein			
+	335149	336012	864	FIG00637989: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_335149_336012		Protein of unknown function (DUF2877).		CDS	conserved hypothetical protein			
+	336002	337549	1548	Putative oxidoreductase subunit	peg	gi|49175990|ref|NC_000913.2|_336002_337549		Succinyl-CoA synthetase, alpha subunit		CDS	coA binding domain protein			
+	337549	338967	1419	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_337549_338967		Protein of unknown function (DUF1116).		CDS	conserved hypothetical protein			
+	338993	339313	321	FIG00639198: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_338993_339313		hypothetical protein		CDS	conserved hypothetical protein			
+	339389	340339	951	Carbamate kinase (EC 2.7.2.2)	peg	gi|49175990|ref|NC_000913.2|_339389_340339		carbamate kinase (EC 2.7.2.2)	2.7.2.2	CDS	carbamate kinase	2.7.2.2	cpkA	
+	340349	341731	1383	Cytosine deaminase (EC 3.5.4.1)	peg	gi|49175990|ref|NC_000913.2|_340349_341731		Cytosine deaminase and related metal-dependent hydrolases		CDS	amidohydrolase family protein			
+	342108	343157	1050	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|49175990|ref|NC_000913.2|_342108_343157		Zn-dependent alcohol dehydrogenases	1.-	CDS	conserved hypothetical protein			
+	343400	344215	816	FIG00638728: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_343400_344215		hypothetical protein		CDS	conserved hypothetical protein			
-	344278	344448	171	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_344448_344278					conserved hypothetical protein			
-	344890	345522	633	Threonine efflux protein	peg	gi|49175990|ref|NC_000913.2|_345522_344890		The Resistance to Homoserine/Threonine (RhtB) Family protein		CDS	homoserine/Threonine efflux family protein			
+	345708	345983	276	FIG00639237: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_345708_345983		Protein of unknown function (DUF1471).		CDS	conserved hypothetical protein			
-	346081	347667	1587	Propionate catabolism operon regulatory protein PrpR	peg	gi|49175990|ref|NC_000913.2|_347667_346081		propionate catabolism operon regulatory protein PrpR		CDS	propionate catabolism operon regulatory protein PrpR		prpR	
-	348742	349188	447				hypothetical protein		CDS				
+	347906	348796	891	Methylisocitrate lyase (EC 4.1.3.30)	peg	gi|49175990|ref|NC_000913.2|_347906_348796		methylisocitrate lyase (EC 4.1.3.30)	4.1.3.30	CDS	methylisocitrate lyase	4.1.3.30	prpB	
+	349236	350405	1170	2-methylcitrate synthase (EC 2.3.3.5)	peg	gi|49175990|ref|NC_000913.2|_349236_350405		2-methylcitrate synthase (EC 2.3.3.5)	2.3.3.5	CDS	2-methylcitrate synthase/citrate synthase II family protein			
+	350439	351890	1452	2-methylcitrate dehydratase (EC 4.2.1.79)	peg	gi|49175990|ref|NC_000913.2|_350439_351890		2-methylcitrate dehydratase (EC 4.2.1.79)	4.2.1.79	CDS	2-methylcitrate dehydratase	4.2.1.79	prpD	
+	351930	353816	1887	Propionate--CoA ligase (EC 6.2.1.17)	peg	gi|49175990|ref|NC_000913.2|_351930_353816		propionyl-CoA synthetase (EC 6.2.1.17)	6.2.1.17	CDS	propionate--CoA ligase	6.2.1.17	prpE	
+	354146	355405	1260	COG1457: Purine-cytosine permease and related proteins	peg	gi|49175990|ref|NC_000913.2|_354146_355405		Purine-cytosine permease and related proteins		CDS	cytosine permease		codB	
+	355395	356678	1284	Cytosine deaminase (EC 3.5.4.1)	peg	gi|49175990|ref|NC_000913.2|_355395_356678		Cytosine deaminase and related metal-dependent hydrolases	3.5.4.1	CDS	cytosine deaminase	3.5.4.1	codA	
-	357015	357914	900	Cyn operon transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_357914_357015		Transcriptional regulator		CDS	HTH-type transcriptional regulator CynR		cynR	
+	358023	358682	660	Carbonic anhydrase (EC 4.2.1.1)	peg	gi|49175990|ref|NC_000913.2|_358023_358682		Carbonic anhydrase	4.2.1.1	CDS	carbonic anhydrase 1	4.2.1.1	cynT	
+	358713	359183	471	Cyanate hydratase (EC 4.2.1.104)	peg	gi|49175990|ref|NC_000913.2|_358713_359183		cyanate hydratase	4.2.1.104	CDS	cyanate hydratase	4.2.1.104	cynS	
+	359189	360370	1182	Cyanate transport protein CynX	peg	gi|49175990|ref|NC_000913.2|_359216_360370		cyanate transporter		CDS	cyanate transporter family protein			
-	360473	361084	612	Galactoside O-acetyltransferase (EC 2.3.1.18)	peg	gi|49175990|ref|NC_000913.2|_361084_360473		Acetyltransferase (isoleucine patch superfamily)	2.3.1.18	CDS	galactoside O-acetyltransferase	2.3.1.18	lacA	
-	361150	362403	1254	Lactose permease	peg	gi|49175990|ref|NC_000913.2|_362403_361150		oligosaccharide:H+ symporter		CDS	lactose permease		lacY	
-	362455	365529	3075	Beta-galactosidase (EC 3.2.1.23)	peg	gi|49175990|ref|NC_000913.2|_365529_362455		Beta-galactosidase/beta-glucuronidase	3.2.1.23	CDS	beta-galactosidase	3.2.1.23	lacZ	
-	365652	366743	1092	Transcriptional repressor of the lac operon	peg	gi|49175990|ref|NC_000913.2|_366734_365652		transcriptional regulator, LacI family		CDS	lactose operon repressor		lacI	
-	366811	367644	834	Mhp operon transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_367644_366811		transcriptional regulator, IclR family		CDS	bacterial transcriptional regulator family protein			
+	367835	369499	1665	3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)	peg	gi|49175990|ref|NC_000913.2|_367835_369499		3-hydroxyphenylpropionate hydroxylase (EC 1.14.13.127)		CDS	3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	1.14.13.n3	mhpA	
+	369501	370445	945	"3-carboxyethylcatechol 2,3-dioxygenase (EC 1.13.11.16)"	peg	gi|49175990|ref|NC_000913.2|_369501_370445		2,3-dihydroxyphenylpropionate 1,2-dioxygenase (EC 1.13.11.16)	1.13.11.16	CDS	2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase	1.13.11.16	mhpB	
+	370463	371329	867	"2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase (EC 3.7.1.-)"	peg	gi|49175990|ref|NC_000913.2|_370463_371329		2-hydroxy-6-ketonona-2,4-dienedioate hydrolase (EC 3.7.1.-)	3.7.1.-	CDS	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	3.7.1.n1	mhpC	
+	371339	372148	810	2-keto-4-pentenoate hydratase (EC 4.2.1.80)	peg	gi|49175990|ref|NC_000913.2|_371339_372148		2-keto-4-pentenoate hydratase (EC 4.2.1.80)	4.2.1.80	CDS	2-keto-4-pentenoate hydratase	4.2.1.80	mhpD	
+	372145	373095	951	"Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol"	peg	gi|49175990|ref|NC_000913.2|_372145_373095		acetaldehyde dehydrogenase (EC 1.2.1.10)	1.2.1.10	CDS	acetaldehyde dehydrogenase	1.2.1.10		
+	373092	374105	1014	4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	peg	gi|49175990|ref|NC_000913.2|_373092_374105		4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)	4.1.3.39	CDS	4-hydroxy-2-oxovalerate aldolase	4.1.3.39	dmpG	
+	374683	375894	1212	4-hydroxybenzoate transporter	peg	gi|49175990|ref|NC_000913.2|_374683_375894		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
+	375996	376535	540	Nucleoprotein/polynucleotide-associated enzyme	peg	gi|49175990|ref|NC_000913.2|_375996_376535		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	376759	377592	834	S-formylglutathione hydrolase (EC 3.1.2.12)	peg	gi|49175990|ref|NC_000913.2|_377592_376759		S-formylglutathione hydrolase	3.1.2.12	CDS	S-formylglutathione hydrolase	3.1.2.12	fghA	
-	377686	378795	1110	S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)	peg	gi|49175990|ref|NC_000913.2|_378795_377686		S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	1.1.1.284, 1.1.1.1	CDS	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	1.1.1.284		
-	378830	379105	276	FrmR: Negative transcriptional regulator of formaldehyde detoxification operon	peg	gi|49175990|ref|NC_000913.2|_379105_378830		Uncharacterized protein conserved in bacteria		CDS	transcriptional repressor frmR		frmR	
-	379293	380066	774	Putative uncharacterized protein YaiO	peg	gi|49175990|ref|NC_000913.2|_380066_379293		hypothetical protein		CDS	putative predicted acyl transferase			
-	380068	380511	444	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	peg	gi|49175990|ref|NC_000913.2|_380511_380068		hypothetical protein		CDS	bacterial transferase hexapeptide family protein			
+	380575	380940	366	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_380575_380940		Transposase and inactivated derivatives		CDS	transposase family protein			
+	380898	381803	906	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_380898_381803		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	381963	383159	1197	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	peg	gi|49175990|ref|NC_000913.2|_383159_381963		Glycosyltransferases, probably involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
-	383283	383840	558	FIG00640332: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_383840_383283		Uncharacterized proteins, LmbE homologs		CDS	glcNAc-PI de-N-acetylase family protein			
+	384456	385418	963	Taurine-binding periplasmic protein TauA	peg	gi|49175990|ref|NC_000913.2|_384456_385418		taurine ABC transporter, periplasmic binding protein		CDS	taurine ABC transporter, periplasmic binding protein		tauA	
+	385431	386198	768	Taurine transport ATP-binding protein TauB	peg	gi|49175990|ref|NC_000913.2|_385431_386198		ABC-type taurine transport system, ATPase component	3.6.3.36	CDS	ABC transporter family protein			
+	386195	387022	828	Taurine transport system permease protein TauC	peg	gi|49175990|ref|NC_000913.2|_386195_387022		ABC-type nitrate/sulfonate/bicarbonate transport system, permease component		CDS	binding--dependent transport system inner membrane component family protein			
+	387019	387870	852	Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17)	peg	gi|49175990|ref|NC_000913.2|_387019_387870		Probable taurine catabolism dioxygenase	1.14.11.17	CDS	alpha-ketoglutarate-dependent taurine dioxygenase	1.14.11.17	tauD	
-	387977	388951	975	Porphobilinogen synthase (EC 4.2.1.24)	peg	gi|49175990|ref|NC_000913.2|_388951_387977		porphobilinogen synthase (EC 4.2.1.24)	4.2.1.24	CDS	delta-aminolevulinic acid dehydratase	4.2.1.24	hemB	
-	389121	389276	156	FIG00640177: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_389276_389121					putative predicted protein			
+	389475	390935	1461	Putative flagellin structural protein	peg	gi|49175990|ref|NC_000913.2|_389475_390935		hypothetical protein		CDS	conserved hypothetical protein			
-	390963	391829	867	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_391829_390963		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	391826	392125	300	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_392125_391826		Transposase.		CDS	transposase family protein			
+	392239	393642	1404	Putative flagellin structural protein	peg	gi|49175990|ref|NC_000913.2|_392245_393642		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
+	393730	394353	624	FIG00637869: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_393730_394353		hypothetical protein		CDS	putative dNA-binding transcriptional regulator			
-	394354	395511	1158	Penicillin-binding protein AmpH	peg	gi|49175990|ref|NC_000913.2|_395511_394354		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
+	395649	395843	195	FIG00638822: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_395649_395843					putative hypothe			
+	395863	397083	1221	SbmA protein	peg	gi|49175990|ref|NC_000913.2|_395863_397083		ABC-type long-chain fatty acid transport system, fused permease and ATPase components		CDS	protein sbmA		sbmA	
+	397096	398190	1095	putative lipoprotein	peg	gi|49175990|ref|NC_000913.2|_397096_398190		Protein of unknown function (DUF1615).		CDS	conserved hypothetical protein			
-	398249	398557	309	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_398557_398249		Protein of unknown function (DUF2755).		CDS	inner membrane protein yaiY		yaiY	
+	398817	399029	213	membrane protein yaiZ	peg	gi|49175990|ref|NC_000913.2|_398817_399029		Protein of unknown function (DUF2754).		CDS	conserved hypothetical protein			
-	399053	400147	1095	D-alanine--D-alanine ligase A (EC 6.3.2.4)	peg	gi|49175990|ref|NC_000913.2|_400147_399053		D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4	CDS	D-alanine--D-alanine ligase A	6.3.2.4	ddlA	
+	400610	400870	261	Cytoplasmic protein YaiB	peg	gi|49175990|ref|NC_000913.2|_400610_400870		Sigma-S stabilisation anti-adaptor protein.		CDS	anti-adapter protein iraP		iraP	
+	400971	402386	1416	Alkaline phosphatase (EC 3.1.3.1)	peg	gi|49175990|ref|NC_000913.2|_400971_402386		alkaline phosphatase (EC 3.1.3.1)	3.1.3.1	CDS	alkaline phosphatase	3.1.3.1	phoA	
+	402505	402825	321	Phosphate starvation-inducible protein PsiF	peg	gi|49175990|ref|NC_000913.2|_402505_402825		psiF repeat.		CDS	phosphate starvation-inducible protein psiF		psiF	
+	402927	404042	1116	Protein YaiC	peg	gi|49175990|ref|NC_000913.2|_402927_404042		diguanylate cyclase (GGDEF) domain		CDS	putative diguanylate cyclase AdrA			
-	404059	404868	810	Pyrroline-5-carboxylate reductase (EC 1.5.1.2)	peg	gi|49175990|ref|NC_000913.2|_404868_404059		pyrroline-5-carboxylate reductase (EC 1.5.1.2)	1.5.1.2	CDS	pyrroline-5-carboxylate reductase	1.5.1.2	proC	
+	404988	405446	459	Protein YaiI	peg	gi|49175990|ref|NC_000913.2|_404988_405446		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	405629	406153	525	Shikimate kinase III (EC 2.7.1.71)	peg	gi|49175990|ref|NC_000913.2|_405686_406153		shikimate kinase (EC 2.7.1.71)	2.7.1.71	CDS	shikimate kinase 2	2.7.1.71	aroL	
+	406203	406394	192	Protein YaiA	peg	gi|49175990|ref|NC_000913.2|_406203_406394		hypothetical protein		CDS	conserved hypothetical protein			
+	406652	407329	678	AroM protein	peg	gi|49175990|ref|NC_000913.2|_406652_407329		AroM protein.		CDS	aroM family protein			
+	407401	407685	285	Cytoplasmic protein YaiE	peg	gi|49175990|ref|NC_000913.2|_407401_407685		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	407959	408174	216	Protein YkiA	peg	gi|49175990|ref|NC_000913.2|_407959_408174					conserved hypothetical protein			
-	408332	409309	978	DNA recombination-dependent growth factor C	peg	gi|49175990|ref|NC_000913.2|_409243_408332		DNA recombination-dependent growth factor C		CDS	recombination-associated protein rdgC		rdgC	
+	409368	410276	909	"Glucokinase, ROK family (EC 2.7.1.2)"	peg	gi|49175990|ref|NC_000913.2|_409368_410276		N-acetylglucosamine kinase (EC 2.7.1.59)	2.7.1.4	CDS	fructokinase	2.7.1.4	mak	
+	410300	410497	198	FIG01271267: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_410300_410497					conserved hypothetical protein			
-	410521	411789	1269	Protein AraJ precursor	peg	gi|49175990|ref|NC_000913.2|_411789_410521		Arabinose efflux permease		CDS	protein AraJ		araJ	
-	411831	414977	3147	Exonuclease SbcC	peg	gi|49175990|ref|NC_000913.2|_414977_411831		exonuclease SbcC		CDS	nuclease sbcCD subunit C		sbcC	
-	414974	416176	1203	Exonuclease SbcD	peg	gi|49175990|ref|NC_000913.2|_416176_414974		Exodeoxyribonuclease I subunit D (EC 3.1.11.1)		CDS	nuclease sbcCD subunit D		sbcD	
+	416366	417055	690	Phosphate regulon transcriptional regulatory protein PhoB (SphR)	peg	gi|49175990|ref|NC_000913.2|_416366_417055		phosphate regulon transcriptional regulatory protein PhoB		CDS	phosphate regulon transcriptional regulatory protein PhoB		phoB	
+	417113	418408	1296	Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)	peg	gi|49175990|ref|NC_000913.2|_417113_418408		PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	phosphate regulon sensor kinase PhoR	2.7.3.-	phoR	
+	418815	420134	1320	Branched-chain amino acid transport system carrier protein	peg	gi|49175990|ref|NC_000913.2|_418815_420134		branched-chain amino acid uptake carrier		CDS	branched-chain amino acid transport system II carrier protein		brnQ	
+	420210	421583	1374	Proline-specific permease proY	peg	gi|49175990|ref|NC_000913.2|_420264_421583		proline:proton symporter, AAT family (TC 2.A.3.1.6)		CDS	proline-specific permease ProY		proY	
+	421739	423556	1818	Maltodextrin glucosidase (EC 3.2.1.20)	peg	gi|49175990|ref|NC_000913.2|_421739_423556		Glycosidases	3.2.1.20	CDS	alpha amylase, catalytic domain protein			
-	423561	424142	582	Acyl carrier protein phosphodiesterase (EC 3.1.4.14)	peg	gi|49175990|ref|NC_000913.2|_424142_423561		Uncharacterized protein conserved in bacteria	3.1.4.14	CDS	conserved hypothetical protein			
+	424235	425305	1071	S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_424235_425305		S-adenosylmethionine:tRNA ribosyltransferase-isomerase	5.-	CDS	tRNA ribosyltransferase-isomerase	5.-.-.-	queA	
+	425361	426488	1128	tRNA-guanine transglycosylase (EC 2.4.2.29)	peg	gi|49175990|ref|NC_000913.2|_425361_426488		tRNA-guanine transglycosylase (EC 2.4.2.29)	2.4.2.29	CDS	queuine tRNA-ribosyltransferase	2.4.2.29	tgt	
+	426511	426843	333	Preprotein translocase subunit YajC (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_426511_426843		protein translocase subunit yajC		CDS	preprotein translocase, YajC subunit		yajC	
+	426904	428718	1815	Protein-export membrane protein SecD (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_426904_428718		protein-export membrane protein, SecD/SecF family		CDS	-export membrane protein SecD		secD	
+	428729	429700	972	Protein-export membrane protein SecF (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_428729_429700		protein translocase subunit secF		CDS	protein translocase subunit SecF		secF	
+	429829	430176	348	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_429829_430176		HNH endonuclease.		CDS	HNH endonuclease family protein			
-	430353	431237	885	Nucleoside-specific channel-forming protein Tsx precursor	peg	gi|49175990|ref|NC_000913.2|_431237_430353		Nucleoside-binding outer membrane protein		CDS	nucleoside-specific channel-forming protein tsx		tsx	
-	431536	432075	540	Hypothetical lipoprotein yajI	peg	gi|49175990|ref|NC_000913.2|_432075_431536		Protein of unknown function (DUF3251).		CDS	conserved hypothetical protein			
+	432226	432675	450	Ribonucleotide reductase transcriptional regulator NrdR	peg	gi|49175990|ref|NC_000913.2|_432280_432675		transcriptional regulator NrdR		CDS	transcriptional regulator NrdR		nrdR	
+	432679	433782	1104	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	peg	gi|49175990|ref|NC_000913.2|_432679_433782		diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)	1.1.1.193, 3.5.4.26	CDS	riboflavin biosynthesis protein RibD	3.5.4.26	ribD	
+	433871	434341	471	"6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)"	peg	gi|49175990|ref|NC_000913.2|_433871_434341		6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	2.5.1.78	CDS	6,7-dimethyl-8-ribityllumazine synthase	6.3.3.-	ribH	
+	434361	434780	420	Transcription termination protein NusB	peg	gi|49175990|ref|NC_000913.2|_434361_434780		NusB antitermination factor		CDS	transcription antitermination factor NusB		nusB	
+	434858	435835	978	Thiamine-monophosphate kinase (EC 2.7.4.16)	peg	gi|49175990|ref|NC_000913.2|_434858_435835		thiamine-phosphate kinase	2.7.4.16	CDS	thiamine-monophosphate kinase	2.7.4.16	thiL	
+	435813	436331	519	Phosphatidylglycerophosphatase A (EC 3.1.3.27)	peg	gi|49175990|ref|NC_000913.2|_435822_436331		Phosphatidylglycerophosphatase A and related proteins	3.1.3.27	CDS	phosphatidylglycerophosphatase A	3.1.3.27	pgpA	
-	436385	437359	975	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_437359_436385		Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	aldo/keto reductase family protein			
-	437539	439401	1863	1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7)	peg	gi|49175990|ref|NC_000913.2|_439401_437539		1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)	2.2.1.7	CDS	1-deoxy-D-xylulose-5-phosphate synthase	2.2.1.7	dxs	
-	439426	440325	900	"Dimethylallyltransferase (EC 2.5.1.1) @ (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10)"	peg	gi|49175990|ref|NC_000913.2|_440325_439426		farnesyl-diphosphate synthase (EC 2.5.1.10)	2.5.1.1, 2.5.1.10	CDS	farnesyl diphosphate synthase	2.5.1.10	ispA	
-	440325	440567	243	Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	peg	gi|49175990|ref|NC_000913.2|_440567_440325		Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	3.1.11.6	CDS	exodeoxyribonuclease VII, small subunit	3.1.11.6	xseB	
+	440773	442221	1449	tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis	peg	gi|49175990|ref|NC_000913.2|_440773_442221		[ThiS-adenylate] sulfurtransferase		CDS	tRNA sulfurtransferase ThiI	2.8.1.4	thiI	
-	442275	442865	591	"DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31"	peg	gi|49175990|ref|NC_000913.2|_442865_442275		DJ-1 family protein		CDS	chaperone protein YajL		yajL	
-	442828	443739	912	2-dehydropantoate 2-reductase (EC 1.1.1.169)	peg	gi|49175990|ref|NC_000913.2|_443739_442828		ketopantoate reductase (EC 1.1.1.169)	1.1.1.169	CDS	2-dehydropantoate 2-reductase	1.1.1.169	panE	
+	443907	444398	492	FIG001943: hypothetical protein YajQ	peg	gi|49175990|ref|NC_000913.2|_443907_444398		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	444526	445890	1365	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_445818_444526		Arabinose efflux permease		CDS	inner membrane transport protein yajR		yajR	
-	446039	446929	891	"Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB"	peg	gi|49175990|ref|NC_000913.2|_446926_446039		protoheme IX farnesyltransferase	2.5.1.-	CDS	protoheme IX farnesyltransferase	2.5.1.-	cyoE	
-	446941	447270	330	Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_447216_446941		cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-)		CDS	cytochrome o ubiquinol oxidase subunit IV	1.10.3.-	cyoD	
-	447270	447884	615	Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_447884_447270		cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-)	1.10.3.-	CDS	cytochrome o ubiquinol oxidase, subunit III	1.10.3.-	cyoC	
-	447874	449865	1992	Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_449865_447874		cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-)	1.10.3.-	CDS	cytochrome o ubiquinol oxidase, subunit I	1.10.3.-	cyoB	
-	449887	450834	948	Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_450774_449887		cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-)	1.10.3.-	CDS	ubiquinol oxidase, subunit II	1.10.3.-	cyoA	
-	451294	452769	1476	AmpG permease	peg	gi|49175990|ref|NC_000913.2|_452769_451294		AmpG-related permease		CDS	protein AmpG		ampG	
-	452813	453391	579	Hypothetical lipoprotein YajG precursor	peg	gi|49175990|ref|NC_000913.2|_453391_452813		Uncharacterized lipoprotein		CDS	conserved hypothetical protein			
+	453696	454013	318	Cell division protein BolA	peg	gi|49175990|ref|NC_000913.2|_453696_454013		transcriptional regulator, BolA protein family		CDS	protein BolA		bolA	
+	454022	454210	189	FIG00637934: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_454022_454210					putative predicted protein			
+	454357	455655	1299	Cell division trigger factor (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_454357_455655		trigger factor		CDS	trigger factor	5.2.1.8	tig	
+	455901	456524	624	ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)	peg	gi|49175990|ref|NC_000913.2|_455901_456524		ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	3.4.21.92	CDS	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	3.4.21.92	clpP	
+	456650	457924	1275	ATP-dependent Clp protease ATP-binding subunit ClpX	peg	gi|49175990|ref|NC_000913.2|_456650_457924		ATP-dependent Clp protease ATP-binding subunit ClpX (EC 3.4.21.92)		CDS	ATP-dependent Clp protease, ATP-binding subunit ClpX		clpX	
+	458112	460466	2355	ATP-dependent protease La (EC 3.4.21.53) Type I	peg	gi|49175990|ref|NC_000913.2|_458112_460466		ATP-dependent proteinase. Serine peptidase. MEROPS family S16	3.4.21.53	CDS	ATP-dependent protease La	3.4.21.53	lon	
+	460675	460947	273	DNA-binding protein HU-beta	peg	gi|49175990|ref|NC_000913.2|_460675_460947		bacterial nucleoid protein HU beta subunit		CDS	DNA-binding protein HU-beta		hupB	
+	461139	463010	1872	Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_461139_463010		Parvulin-like peptidyl-prolyl isomerase	5.2.1.8	CDS	peptidyl-prolyl cis-trans isomerase D	5.2.1.8	ppiD	
+	463161	463532	372	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_463161_463532		competence protein ComEA helix-hairpin-helix repeat region		CDS	competence ComEA helix-hairpin-helix repeat region domain protein			
+	463626	464024	399	4-hydroxybenzoyl-CoA thioesterase family active site	peg	gi|49175990|ref|NC_000913.2|_463626_464024		acyl-CoA thioester hydrolase, YbgC/YbaW family	3.1.2.-	CDS	long-chain acyl-CoA thioesterase tesC	3.1.2.-	tesC	
-	464076	464771	696	Queuosine Biosynthesis QueC ATPase	peg	gi|49175990|ref|NC_000913.2|_464771_464076		preQ(0) biosynthesis protein QueC		CDS	queuosine biosynthesis protein QueC		queC	
-	464836	466536	1701	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"	peg	gi|49175990|ref|NC_000913.2|_466536_464836		ABC-type uncharacterized transport system, periplasmic component		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
+	466636	467454	819	"Cof protein, HD superfamily hydrolase"	peg	gi|49175990|ref|NC_000913.2|_466636_467454		HAD-superfamily hydrolase, subfamily IIB	3.6.1.-	CDS	HMP-PP phosphatase	3.6.1.-	cof	
+	467607	468065	459	Putative HTH-type transcriptional regulator ybaO	peg	gi|49175990|ref|NC_000913.2|_467607_468065		transcriptional regulator, AsnC family		CDS	asnC family protein			
+	468095	469867	1773	ATP-binding component of a transport system	peg	gi|49175990|ref|NC_000913.2|_468095_469867		ABC-type multidrug transport system, ATPase and permease components		CDS	ABC transporter family protein			
+	469860	471641	1782	Multidrug resistance-like ATP-binding protein mdlB	peg	gi|49175990|ref|NC_000913.2|_469860_471641		ABC-type multidrug transport system, ATPase and permease components		CDS	multidrug resistance-like ATP-binding protein MdlB	3.6.3.44	mdlB	
+	471822	472160	339	"Nitrogen regulatory protein P-II, glnK"	peg	gi|49175990|ref|NC_000913.2|_471822_472160		nitrogen regulatory protein P-II family		CDS	nitrogen regulatory protein P-II 2		glnK	
+	472190	473476	1287	Ammonium transporter	peg	gi|49175990|ref|NC_000913.2|_472190_473476		ammonium transporter (TC 1.A.11)		CDS	ammonia channel		amtB	
-	473525	474385	861	Acyl-CoA thioesterase II (EC 3.1.2.-)	peg	gi|49175990|ref|NC_000913.2|_474385_473525		acyl-CoA thioesterase II	3.1.2.-	CDS	acyl-CoA thioesterase II	3.1.2.-	tesB	
+	474603	475175	573	Glycoprotein-polysaccharide metabolism	peg	gi|49175990|ref|NC_000913.2|_474618_475175		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	475206	475517	312	methylated-DNA--protein-cysteine methyltransferase-related protein	peg	gi|49175990|ref|NC_000913.2|_475517_475206		O(6)-alkylguanine repair protein YbaZ		CDS	O6-methylguanine-DNA methyltransferase			
+	475896	476249	354	RNA signal recognition particle 4.5S RNA	peg	gi|49175990|ref|NC_000913.2|_475896_476249		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	476291	477841	1551	Uncharacterized protein ylaB	peg	gi|49175990|ref|NC_000913.2|_477841_476291		Predicted signal transduction protein containing sensor and EAL domains		CDS	EAL domain protein			
-	478005	478475	471	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_478475_478005		sigma70 family sigma factor YlaC.		CDS	inner membrane protein ylaC		ylaC	
-	478591	479142	552	Maltose O-acetyltransferase (EC 2.3.1.79)	peg	gi|49175990|ref|NC_000913.2|_479142_478591		Acetyltransferase (isoleucine patch superfamily)	2.3.1.79	CDS	maltose O-acetyltransferase	2.3.1.79	maa	
-	479314	479532	219	Haemolysin expression modulating protein	peg	gi|49175990|ref|NC_000913.2|_479532_479314		Haemolysin expression modulating protein.		CDS	hemolysin expression-modulating protein		hha	
-	479558	479932	375	FIG00948312: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_479932_479558		Biofilm formation regulator YbaJ.		CDS	biofilm formation regulator YbaJ family protein			
-	480478	483627	3150	"RND efflux system, inner membrane transporter CmeB"	peg	gi|49175990|ref|NC_000913.2|_483627_480478		The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	acriflavine resistance protein B		acrB	
-	483650	484843	1194	Acriflavine resistance protein A (AcrA)	peg	gi|49175990|ref|NC_000913.2|_484735_483650		RND family efflux transporter, MFP subunit		CDS	acriflavine resistance protein A		acrA	
+	484985	485632	648	"Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family"	peg	gi|49175990|ref|NC_000913.2|_484985_485632		transcriptional regulator, TetR family		CDS	HTH-type transcriptional regulator AcrR		acrR	
+	485760	489122	3363	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel	peg	gi|49175990|ref|NC_000913.2|_485760_489122		Small-conductance mechanosensitive channel		CDS	potassium efflux system KefA		kefA	
-	489334	489495	162	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_489495_489334		Protein of unknown function (DUF2496).		CDS	conserved hypothetical protein			
-	489509	490036	528	Primosomal replication protein N prime prime	peg	gi|49175990|ref|NC_000913.2|_490036_489509		restart primosome assembly protein PriC		CDS	primosomal replication protein N''		priC	
+	490106	490483	378	FIG039061: hypothetical protein related to heme utilization	peg	gi|49175990|ref|NC_000913.2|_490106_490483		Uncharacterized protein conserved in bacteria		CDS	inner membrane protein ybaN		ybaN	
+	490636	491187	552	Adenine phosphoribosyltransferase (EC 2.4.2.7)	peg	gi|49175990|ref|NC_000913.2|_490636_491187		adenine phosphoribosyltransferase (EC 2.4.2.7)	2.4.2.7	CDS	adenine phosphoribosyltransferase	2.4.2.7	apt	
+	491316	493247	1932	DNA polymerase III subunits gamma and tau (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_491385_493247		DNA polymerase III, gamma subunit (EC 2.7.7.7)/DNA polymerase III, tau subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, subunit gamma and tau	2.7.7.7	dnaX	
+	493300	493629	330	FIG000557: hypothetical protein co-occurring with RecR	peg	gi|49175990|ref|NC_000913.2|_493300_493629		DNA-binding protein, YbaB/EbfC family		CDS	DNA-binding protein, YbaB/EbfC family			
+	493629	494234	606	Recombination protein RecR	peg	gi|49175990|ref|NC_000913.2|_493629_494234		DNA replication and repair protein RecR		CDS	recombination protein RecR		recR	
+	494344	496218	1875	Chaperone protein HtpG	peg	gi|49175990|ref|NC_000913.2|_494344_496218		Molecular chaperone, HSP90 family		CDS	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			
+	496399	497043	645	Adenylate kinase (EC 2.7.4.3)	peg	gi|49175990|ref|NC_000913.2|_496399_497043		Adenylate kinase (EC 2.7.4.3)	2.7.4.3	CDS	adenylate kinase	2.7.4.3	adk	
-	498238	499197	960	Acetyl esterase (EC 3.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_499197_498238		Esterase/lipase	3.1.1.-	CDS	acetyl esterase	3.1.1.-	aes	
+	497279	498241	963	"Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)"	peg	gi|49175990|ref|NC_000913.2|_497279_498241		ferrochelatase (EC 4.99.1.1)	4.99.1.1	CDS	ferrochelatase	4.99.1.1	hemH	
+	499349	500653	1305	Inosine-guanosine kinase (EC 2.7.1.73)	peg	gi|49175990|ref|NC_000913.2|_499349_500653		inosine-guanosine kinase (EC 2.7.1.73)	2.7.1.73	CDS	inosine-guanosine kinase	2.7.1.73	gsk	
-	500786	502462	1677	POTASSIUM/PROTON ANTIPORTER ROSB	peg	gi|49175990|ref|NC_000913.2|_502462_500786		Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)		CDS	inner membrane protein ybaL		ybaL	
-	502700	503920	1221	Fosmidomycin resistance protein	peg	gi|49175990|ref|NC_000913.2|_503920_502700		Nitrate/nitrite transporter		CDS	fosmidomycin resistance protein		fsr	
+	504138	505790	1653	UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)	peg	gi|49175990|ref|NC_000913.2|_504138_505790		5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases	3.1.3.5, 3.6.1.45	CDS	protein UshA	3.1.3.5	ushA	
-	505827	506306	480	Cys-tRNA(Pro) deacylase YbaK	peg	gi|49175990|ref|NC_000913.2|_506306_505827		Cys-tRNA(Pro) hydrolase (EC 3.1.1.-)		CDS	cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK		ybaK	
-	506510	507304	795	FIG01199637: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_507304_506510		Uncharacterized protein conserved in bacteria		CDS	traB family protein			
+	507388	507783	396	HigA protein (antitoxin to HigB)	peg	gi|49175990|ref|NC_000913.2|_507442_507783		addiction module antidote protein, HigA family		CDS	addiction module antidote protein, HigA family		higA	
-	508099	510603	2505	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|49175990|ref|NC_000913.2|_510603_508099		copper-(or silver)-translocating P-type ATPase	3.6.3.4	CDS	copper-translocating P-type ATPase	3.6.3.4		
+	510865	511797	933	Glutaminase (EC 3.5.1.2)	peg	gi|49175990|ref|NC_000913.2|_510865_511797		L-glutaminase (EC 3.5.1.2)	3.5.1.2	CDS	glutaminase A	3.5.1.2	glsA	
+	511800	513092	1293	Inner membrane transport protein YbaT	peg	gi|49175990|ref|NC_000913.2|_511800_513092		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	inner membrane transport protein YbaT		ybaT	
+	513217	513624	408	HTH-type transcriptional regulator cueR	peg	gi|49175990|ref|NC_000913.2|_513217_513624		Cu(I)-responsive transcriptional regulator		CDS	cu(I)-responsive transcriptional regulator		cueR	
-	513625	514083	459	Putative activity regulator of membrane protease YbbK	peg	gi|49175990|ref|NC_000913.2|_514083_513625		Membrane protein implicated in regulation of membrane protease activity		CDS	inner membrane protein ybbJ		ybbJ	
-	514080	514997	918	Putative stomatin/prohibitin-family membrane protease subunit YbbK	peg	gi|49175990|ref|NC_000913.2|_514997_514080		SPFH domain, Band 7 family protein		CDS	protein QmcA		qmcA	
+	515143	515820	678	YbbL ABC transporter ATP-binding protein	peg	gi|49175990|ref|NC_000913.2|_515143_515820		ABC-type uncharacterized transport system, ATPase component		CDS	conserved hypothetical protein			
+	515807	516586	780	YbbM seven transmembrane helix protein	peg	gi|49175990|ref|NC_000913.2|_515807_516586		TIGR00245 family protein		CDS	conserved hypothetical protein			
-	516649	517503	855	FIG000875: Thioredoxin domain-containing protein EC-YbbN	peg	gi|49175990|ref|NC_000913.2|_517503_516649		Thioredoxin domain-containing protein		CDS	conserved hypothetical protein			
-	517564	518334	771	Putative NAD(P)-dependent oxidoreductase EC-YbbO	peg	gi|49175990|ref|NC_000913.2|_518334_517564		Short-chain dehydrogenases of various substrate specificities		CDS	short chain dehydrogenase family protein			
-	518363	518986	624	Arylesterase precursor (EC 3.1.1.2)	peg	gi|49175990|ref|NC_000913.2|_518986_518363		Lysophospholipase L1 and related esterases	3.1.2.-, 3.1.1.5	CDS	GDSL-like Lipase/Acylhydrolase family protein			
+	518957	519643	687	"Uncharacterized metabolite ABC transporter in Enterobacteriaceae, ATP-binding protein EC-YbbA"	peg	gi|49175990|ref|NC_000913.2|_518957_519643		Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component		CDS	ABC transporter family protein			
+	519640	522054	2415	FIG00809136: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_519640_522054		Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component		CDS	ftsX-like permease family protein			
+	522485	526765	4281	core protein	peg	gi|49175990|ref|NC_000913.2|_522485_526765		RHS repeat-associated core domain		CDS	RHS repeat-associated core domain protein			
+	526805	527173	369	FIG00637923: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_526805_527173		hypothetical protein		CDS	conserved hypothetical protein			
+	527173	527883	711	core protein	peg	gi|49175990|ref|NC_000913.2|_527173_527883		RHS repeat-associated core domain		CDS	RHS repeat-associated core domain protein			
+	527864	528124	261				hypothetical protein		CDS				
-	528869	529240	372	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_529240_528869		Winged helix-turn helix.		CDS	helix-turn-helix domain protein			
-	529356	530450	1095	Selenophosphate-dependent tRNA 2-selenouridine synthase	peg	gi|49175990|ref|NC_000913.2|_530450_529356		tRNA 2-selenouridine synthase (EC 2.9.1.-)	2.9.1.-	CDS	tRNA 2-selenouridine synthase	2.9.1.-	selU	
-	530519	531445	927	DNA-binding transcriptional activator of the allD operon	peg	gi|49175990|ref|NC_000913.2|_531445_530519		Transcriptional regulator		CDS	HTH-type transcriptional activator AllS		allS	
+	531675	532157	483	Ureidoglycolate hydrolase (EC 3.5.3.19)	peg	gi|49175990|ref|NC_000913.2|_531675_532157		Ureidoglycolate hydrolase	3.5.3.19	CDS	ureidoglycolate hydrolase	3.5.3.19	allA	
+	532235	533050	816	Negative regulator of allantoin and glyoxylate utilization operons	peg	gi|49175990|ref|NC_000913.2|_532280_533050		transcriptional regulator, IclR family		CDS	acetate operon repressor		iclR	
+	533140	534921	1782	Glyoxylate carboligase (EC 4.1.1.47)	peg	gi|49175990|ref|NC_000913.2|_533140_534921		glyoxylate carboligase	4.1.1.47	CDS	glyoxylate carboligase	4.1.1.47	gcl	
+	534934	535710	777	Hydroxypyruvate isomerase (EC 5.3.1.22)	peg	gi|49175990|ref|NC_000913.2|_534934_535710		hydroxypyruvate isomerase	5.3.1.22	CDS	hydroxypyruvate isomerase	5.3.1.22	hyi	
+	535810	536688	879	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	peg	gi|49175990|ref|NC_000913.2|_535810_536688		2-hydroxy-3-oxopropionate reductase	1.1.1.60	CDS	2-hydroxy-3-oxopropionate reductase	1.1.1.60		
+	536857	538311	1455	Allantoin permease	peg	gi|49175990|ref|NC_000913.2|_536857_538311		NCS1 nucleoside transporter family		CDS	putative allantoin permease			
+	538371	539732	1362	Allantoinase (EC 3.5.2.5)	peg	gi|49175990|ref|NC_000913.2|_538371_539732		allantoinase	3.5.2.5	CDS	allantoinase	3.5.2.5	allB	
+	539789	541090	1302	putative transport	peg	gi|49175990|ref|NC_000913.2|_539789_541090		Xanthine/uracil permeases		CDS	putative purine permease ybbY			
+	541112	542257	1146	Glycerate kinase (EC 2.7.1.31)	peg	gi|49175990|ref|NC_000913.2|_541112_542257		glycerate kinase	2.7.1.31	CDS	glycerate kinase 1	2.7.1.31	glxK	
-	542485	543270	786	Ureidoglycine aminohydrolase	peg	gi|49175990|ref|NC_000913.2|_543270_542485		putative allantoin catabolism protein	3.5.3.-	CDS	conserved hypothetical protein			
-	543281	544516	1236	Allantoate amidohydrolase (EC 3.5.3.9)	peg	gi|49175990|ref|NC_000913.2|_544516_543281		allantoate amidohydrolase	3.5.3.9	CDS	allantoate amidohydrolase	3.5.3.9	allC	
-	544538	545587	1050	Ureidoglycolate dehydrogenase (EC 1.1.1.154)	peg	gi|49175990|ref|NC_000913.2|_545587_544538		ureidoglycolate dehydrogenase	1.1.1.154	CDS	ureidoglycolate dehydrogenase	1.1.1.154	allD	
+	545904	547571	1668	Protein fdrA	peg	gi|49175990|ref|NC_000913.2|_545904_547571		Succinyl-CoA synthetase, alpha subunit		CDS	protein fdrA		fdrA	
+	547581	547841	261	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_547581_547841		hypothetical protein		CDS	conserved hypothetical protein			
+	547838	548839	1002	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_547838_548839		Protein of unknown function (DUF1116).		CDS	conserved hypothetical protein			
+	548850	549665	816	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_548850_549665		Protein of unknown function (DUF2877).		CDS	conserved hypothetical protein			
+	549662	550555	894	Carbamate kinase (EC 2.7.2.2)	peg	gi|49175990|ref|NC_000913.2|_549662_550555		carbamate kinase (EC 2.7.2.2)	2.7.2.2	CDS	carbamate kinase	2.7.2.2	arcC	
-	550750	551817	1068	Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)	peg	gi|49175990|ref|NC_000913.2|_551817_550750		5-(carboxyamino)imidazole ribonucleotide synthase	6.3.4.18	CDS	phosphoribosylaminoimidazole carboxylase, ATPase subunit	4.1.1.21	purK	
-	551814	552323	510	Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)	peg	gi|49175990|ref|NC_000913.2|_552323_551814		5-(carboxyamino)imidazole ribonucleotide mutase	5.4.99.18	CDS	N5-carboxyaminoimidazole ribonucleotide mutase	5.4.99.18	purE	
-	552441	553163	723	"UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-)"	peg	gi|49175990|ref|NC_000913.2|_553163_552441		UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54)	3.6.1.54	CDS	UDP-2,3-diacylglucosamine hydrolase	3.6.1.-	lpxH	
-	553166	553660	495	Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_553660_553166		Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	peptidyl-prolyl cis-trans isomerase B	5.2.1.8	ppiB	
+	553834	555219	1386	Cysteinyl-tRNA synthetase (EC 6.1.1.16)	peg	gi|49175990|ref|NC_000913.2|_553834_555219		cysteinyl-tRNA synthetase (EC 6.1.1.16)	6.1.1.16	CDS	cysteine--tRNA ligase	6.1.1.16	cysS	
-	555255	555776	522	Putative membrane-bound metal-dependent hydrolases	peg	gi|49175990|ref|NC_000913.2|_555776_555255		Predicted membrane-bound metal-dependent hydrolases		CDS	inner membrane protein ybcI		ybcI	
-	555884	556096	213	FIG002958: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_556096_555884		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	556098	556964	867	Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)	peg	gi|49175990|ref|NC_000913.2|_556964_556098		5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	3.5.4.9, 1.5.1.5	CDS	bifunctional protein FolD	3.5.4.9	folD	
+	557435	557977	543	Fimbriae-like adhesin SfmA	peg	gi|49175990|ref|NC_000913.2|_557435_557977		P pilus assembly protein, pilin FimA		CDS	type-1 fimbrial protein, A chain		fimA	
+	558197	558889	693	Fimbrial periplasmic chaperone SfmC	peg	gi|49175990|ref|NC_000913.2|_558197_558889		P pilus assembly protein, chaperone PapD		CDS	chaperone protein fimC		fimC	
+	558920	561523	2604	Outer membrane usher protein SfmD	peg	gi|49175990|ref|NC_000913.2|_558920_561523		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
+	561565	562542	978	Fimbriae-like adhesin SfmH	peg	gi|49175990|ref|NC_000913.2|_561565_562542		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	562553	563068	516	Fimbriae-like periplasmic protein SfmF	peg	gi|49175990|ref|NC_000913.2|_562871_563068		P pilus assembly protein, pilin FimA		CDS	putative fimbrial protein			
-	563071	563703	633	Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family)	peg	gi|49175990|ref|NC_000913.2|_563703_563071		two component transcriptional regulator, LuxR family		CDS	bacterial regulatory s, luxR family protein			
+	563758	563913	156	FIG00639671: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_563758_563913					putative predicted protein			
-	564038	565201	1164	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_565201_564038		Site-specific recombinase XerD		CDS	phage integrase family protein			
-	565321	565584	264	Phage exonuclease (EC 3.1.11.3); Putative phage-encoded enzyme involved in integration-recombination	peg	gi|49175990|ref|NC_000913.2|_565518_565321		hypothetical protein		CDS	exonuclease domain protein	3.1.11.3	exo	
+	565698	565910	213	Putative uncharacterized protein ybcD	peg	gi|49175990|ref|NC_000913.2|_565698_565910					replication P family protein			
+	566065	566364	300	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_566065_566364		Transposase.		CDS	transposase family protein			
+	566361	567227	867	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_566361_567227		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	567538	567870	333	Ethidium bromide-methyl viologen resistance protein EmrE	peg	gi|49175990|ref|NC_000913.2|_567538_567870		Membrane transporters of cations and cationic drugs		CDS	multidrug transporter emrE		emrE	
+	568125	569651	1527	FIG00637998: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_568125_569651		Site-specific recombinases, DNA invertase Pin homologs		CDS	recombinase family protein			
+	570116	570667	552				Raf kinase inhibitor-like protein, YbhB/YbcL family		CDS				
+	570677	571474	798	"Transcriptional regulator, AraC/XylS family"	peg	gi|49175990|ref|NC_000913.2|_570677_571474		AraC-type DNA-binding domain-containing proteins		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
+	571689	572144	456	FIG00638895: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_571689_572144		hypothetical protein		CDS	putative dLP12 prophage; DNA base-flipping protein			
+	572144	572314	171				hypothetical protein		CDS				
+	572307	572597	291	FIG00639062: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_572307_572597		Protein of unknown function (DUF1364).		CDS	conserved hypothetical protein			
+	572594	572956	363	Holliday junction resolvase / Crossover junction endodeoxyribonuclease rusA (EC 3.1.22.-)	peg	gi|49175990|ref|NC_000913.2|_572594_572956		Holliday junction resolvase	3.1.22.4	CDS	crossover junction endodeoxyribonuclease rusA	3.1.22.4	rusA	
+	573179	573562	384	Phage antitermination protein Q	peg	gi|49175990|ref|NC_000913.2|_573179_573562		Phage antitermination protein Q.		CDS	phage antitermination Q family protein			
+	573704	573922	219				hypothetical protein		CDS				
-	573960	574976	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_574976_573960		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
-	574981	576108	1128	Outer membrane porin protein NmpC precursor	peg	gi|49175990|ref|NC_000913.2|_576108_574981		Outer membrane protein (porin)		CDS	outer membrane porin protein ompD		ompD	
+	576621	576836	216	Phage holin	peg	gi|49175990|ref|NC_000913.2|_576621_576836		Lysis protein S.		CDS	lysis S family protein			
+	576836	577333	498	Probable lysozyme from lambdoid prophage DLP12 (EC 3.2.1.17)	peg	gi|49175990|ref|NC_000913.2|_576836_577333		Phage-related lysozyme (muraminidase)	3.2.1.17	CDS	putative lysozyme from lambdoid prophage DLP12			
+	577330	577791	462	Endopeptidase (EC 3.4.-.-)	peg	gi|49175990|ref|NC_000913.2|_577330_577791		Bacteriophage lysis protein.	3.4.-	CDS	bacteriophage lysis family protein			
-	577823	578116	294	Lipoprotein Bor	peg	gi|49175990|ref|NC_000913.2|_578116_577823		Bor protein.		CDS	lipoprotein bor		bor	
-	578407	578817	411				Phage envelope protein		CDS				
+	579103	579309	207	FIG00638683: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_579103_579309		hypothetical protein		CDS	conserved hypothetical protein			
+	580057	580602	546	Terminase small subunit	peg	gi|49175990|ref|NC_000913.2|_580057_580602		Phage DNA packaging protein, Nu1 subunit of terminase		CDS	terminase small subunit		Nu1	
+	580577	581320	744	Tail fiber assembly protein	peg	gi|49175990|ref|NC_000913.2|_580577_581320		Bacteriophage tail assembly protein		CDS	caudovirales tail fibre assembly family protein			
-	581375	581806	432				hypothetical protein		CDS				
+	582098	582283	186	Phage tail fiber assembly protein	peg	gi|49175990|ref|NC_000913.2|_582098_582283		Caudovirales tail fibre assembly protein.		CDS	caudovirales tail fibre assembly family protein			
+	582904	583653	750	HTH-type transcriptional regulator gadW	peg	gi|49175990|ref|NC_000913.2|_582904_583653		transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator AppY		appY	
-	583903	584856	954	Protease VII (Omptin) precursor (EC 3.4.23.49)	peg	gi|49175990|ref|NC_000913.2|_584856_583903		Outer membrane protease	3.4.23.49	CDS	protease 7	3.4.23.49	ompT	
-	585370	586131	762	Transcriptional regulator of catabolic arginine decarboxylase (adiA)	peg	gi|49175990|ref|NC_000913.2|_586131_585370		transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator AdiY		adiY	
-	586314	587204	891	FIG00638135: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_587204_586314		hypothetical protein		CDS	putative n5-glutamine methyltransferase			
-	587205	590177	2973	Bacteriophage N4 adsorption protein A	peg	gi|49175990|ref|NC_000913.2|_590177_587205		Flp pilus assembly protein TadD, contains TPR repeats		CDS	TPR repeat family protein			
-	590164	592401	2238	Bacteriophage N4 adsorption protein B	peg	gi|49175990|ref|NC_000913.2|_592401_590164		Glycosyltransferases, probably involved in cell wall biogenesis		CDS	type II secretion system (T2SS), E, N-terminal domain protein			
-	592551	593993	1443	putative 2-component sensor protein	peg	gi|49175990|ref|NC_000913.2|_593993_592551		heavy metal sensor kinase	2.7.13.3	CDS	sensor kinase CusS	2.7.13.3	cusS	
-	593983	594666	684	Copper-sensing two-component system response regulator CusR	peg	gi|49175990|ref|NC_000913.2|_594666_593983		heavy metal response regulator		CDS	transcriptional regulatory protein CusR		cusR	
+	594713	594868	156	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_594713_594868					putative predicted protein			
+	594823	596196	1374	Cation efflux system protein CusC precursor	peg	gi|49175990|ref|NC_000913.2|_594823_596196		efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family		CDS	cation efflux system protein CusC		cusC	
+	596354	596686	333	Cation efflux system protein CusF precursor	peg	gi|49175990|ref|NC_000913.2|_596354_596686		Uncharacterized conserved protein		CDS	cation efflux system protein CusF		cusF	
+	596702	597925	1224	"Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family"	peg	gi|49175990|ref|NC_000913.2|_596702_597925		RND family efflux transporter, MFP subunit		CDS	cation efflux system protein CusB		cusB	
+	597937	601080	3144	Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA	peg	gi|49175990|ref|NC_000913.2|_597937_601080		heavy metal efflux pump (cobalt-zinc-cadmium)		CDS	cation efflux system protein CusA		cusA	
+	601182	602558	1377	Phenylalanine-specific permease	peg	gi|49175990|ref|NC_000913.2|_601182_602558		phenylalanine:proton symporter, AAT family (TC 2.A.3.1.1)		CDS	phenylalanine-specific permease		pheP	
-	602639	603886	1248	Uncharacterized protein ybdG	peg	gi|49175990|ref|NC_000913.2|_603886_602639		Small-conductance mechanosensitive channel		CDS	miniconductance mechanosensitive channel		mscM	
-	603994	604647	654	Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34)	peg	gi|49175990|ref|NC_000913.2|_604647_603994		Nitroreductase	1.-, 1.5.1.34	CDS	oxygen-insensitive NAD(P)H nitroreductase	1.5.1.34	nfnB	
-	604741	605109	369	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_605109_604741		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	605174	605422	249	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_605422_605174		Protein of unknown function (DUF1158).		CDS	conserved hypothetical protein			
-	605488	606606	1119	FIG00638355: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_606606_605488		carboxylate-amine ligase, YbdK family	6.3.-	CDS	carboxylate-amine ligase YbdK	6.3.-.-	ybdK	
+	606912	607067	156										
+	606960	607211	252	HokE protein	peg	gi|49175990|ref|NC_000913.2|_607059_607211		Hok/gef family.		CDS	hok/gef family protein			
+	607288	608400	1113	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_607288_608400		FOG: Transposase and inactivated derivatives		CDS	transposase DDE domain protein			
-	608682	609452	771	4'-phosphopantetheinyl transferase (EC 2.7.8.-) [enterobactin] siderophore	peg	gi|49175990|ref|NC_000913.2|_609452_608682		Phosphopantetheinyl transferase component of siderophore synthetase	2.7.8.-	CDS	4'-phosphopantetheinyl transferase superfamily protein			
-	609477	611717	2241	"TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D"	peg	gi|49175990|ref|NC_000913.2|_611717_609477		TonB-dependent siderophore receptor		CDS	ferrienterobactin receptor		fepA	
+	611960	613162	1203	Enterobactin esterase	peg	gi|49175990|ref|NC_000913.2|_611960_613162		Enterochelin esterase and related enzymes		CDS	enterochelin esterase		fes	
+	613165	613383	219	FIG005032: Putative cytoplasmic protein YbdZ in enterobactin biosynthesis operon	peg	gi|49175990|ref|NC_000913.2|_613165_613383		Uncharacterized protein conserved in bacteria		CDS	mbtH-like family protein			
+	613380	617261	3882	"Enterobactin synthetase component F, serine activating enzyme (EC 2.7.7.-)"	peg	gi|49175990|ref|NC_000913.2|_613380_617261		amino acid adenylation domain	2.7.7.-	CDS	enterobactin synthase component F	2.7.7.-	entF	
-	618607	619422	816	Ferric enterobactin transport ATP-binding protein FepC (TC 3.A.1.14.2)	peg	gi|49175990|ref|NC_000913.2|_619422_618607		ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34	CDS	ABC transporter family protein			
+	617477	618610	1134	Ferric enterobactin uptake protein FepE	peg	gi|49175990|ref|NC_000913.2|_617477_618610		Chain length determinant protein		CDS	ferric enterobactin transport protein fepE		fepE	
-	619419	620411	993	ferric enterobactin transport protein	peg	gi|49175990|ref|NC_000913.2|_620411_619419		ABC-type enterobactin transport system, permease component		CDS	ferric enterobactin transport system permease protein fepG		fepG	
-	620408	621412	1005	Ferric enterobactin transport system permease protein fepD	peg	gi|49175990|ref|NC_000913.2|_621412_620408		ABC-type Fe3+-siderophore transport system, permease component		CDS	ferric enterobactin transport system permease protein fepD		fepD	
+	621523	622773	1251	Enterobactin exporter EntS	peg	gi|49175990|ref|NC_000913.2|_621523_622773		Arabinose efflux permease		CDS	enterobactin exporter EntS		entS	
-	622777	623733	957	Ferric enterobactin-binding periplasmic protein FepB (TC 3.A.1.14.2)	peg	gi|49175990|ref|NC_000913.2|_623733_622777		ABC-type Fe2+-enterobactin transport system, periplasmic component		CDS	ferrienterobactin-binding periplasmic protein		fepB	
+	624108	625283	1176	Isochorismate synthase (EC 5.4.4.2) [enterobactin] siderophore	peg	gi|49175990|ref|NC_000913.2|_624108_625283		isochorismate synthase (EC 5.4.4.2)	5.4.4.2	CDS	isochorismate synthase entC	5.4.4.2	entC	
+	625293	626903	1611	"2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [enterobactin] siderophore"	peg	gi|49175990|ref|NC_000913.2|_625293_626903		2,3-dihydroxybenzoate-AMP ligase	2.7.7.58	CDS	(2,3-dihydroxybenzoyl)adenylate synthase	2.7.7.58		
+	626917	627774	858	Isochorismatase (EC 3.3.2.1) [enterobactin] siderophore / Apo-aryl carrier domain of EntB	peg	gi|49175990|ref|NC_000913.2|_626917_627774		Isochorismate hydrolase	3.3.2.1	CDS	isochorismatase	3.3.2.1	entB	
+	627774	628520	747	"2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) [enterobactin] siderophore"	peg	gi|49175990|ref|NC_000913.2|_627774_628520		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.3.1.28	CDS	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	1.3.1.28	entA	
+	628523	628936	414	Proofreading thioesterase in enterobactin biosynthesis EntH	peg	gi|49175990|ref|NC_000913.2|_628523_628936		uncharacterized domain 1		CDS	esterase YbdB	3.1.-.-	ybdB	
+	629117	631222	2106	Carbon starvation protein A	peg	gi|49175990|ref|NC_000913.2|_629117_631222		Carbon starvation protein, predicted membrane protein		CDS	carbon starvation protein A		cstA	
+	631405	631602	198	"COG2879, Hypothetical small protein yjiX"	peg	gi|49175990|ref|NC_000913.2|_631405_631602		Uncharacterized small protein		CDS	conserved hypothetical protein			
-	631612	632700	1089	Glycerol dehydrogenase (EC 1.1.1.6)	peg	gi|49175990|ref|NC_000913.2|_632700_631612		Glycerol dehydrogenase and related enzymes	1.1.-	CDS	iron-containing alcohol dehydrogenase family protein			
+	632809	633969	1161	"Methionine aminotransferase, PLP-dependent"	peg	gi|49175990|ref|NC_000913.2|_632809_633969		Aspartate/tyrosine/aromatic aminotransferase	2.6.1.-	CDS	aminotransferase YbdL	2.6.1.-	ybdL	
-	633970	634599	630	Co-activator of prophage gene expression IbrB	peg	gi|49175990|ref|NC_000913.2|_634587_633970		Predicted transcriptional regulators		CDS	parB-like nuclease domain protein			
-	634572	635792	1221	Co-activator of prophage gene expression IbrA	peg	gi|49175990|ref|NC_000913.2|_635792_634572		Predicted phosphoadenosine phosphosulfate sulfotransferase		CDS	conserved hypothetical protein			
-	635939	636841	903	LysR-family transcriptional regulator YbeF	peg	gi|49175990|ref|NC_000913.2|_636841_635939		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	637050	637796	747	Thiol:disulfide interchange protein DsbG precursor	peg	gi|49175990|ref|NC_000913.2|_637796_637050		Thiol:disulfide interchange protein DsbC		CDS	thioredoxin family protein			
+	638168	638731	564	Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)	peg	gi|49175990|ref|NC_000913.2|_638168_638731		peroxiredoxin	1.11.1.15	CDS	peroxiredoxin	1.11.1.15	ahpC	
+	638946	640541	1596	Alkyl hydroperoxide reductase protein F (EC 1.6.4.-)	peg	gi|49175990|ref|NC_000913.2|_638976_640541		alkyl hydroperoxide reductase, F subunit		CDS	alkyl hydroperoxide reductase, F subunit	1.8.1.-	ahpF	
-	640662	641090	429	Universal stress protein G	peg	gi|49175990|ref|NC_000913.2|_641090_640662		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein G		uspG	
+	641311	642549	1239	Uncharacterized zinc-type alcohol dehydrogenase-like protein ybdR	peg	gi|49175990|ref|NC_000913.2|_641311_642549		glutathione-independent formaldehyde dehydrogenase		CDS	zinc-binding dehydrogenase family protein			
-	642553	642741	189	FIG00639549: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_642741_642553		hypothetical protein		CDS	conserved hypothetical protein			
-	642780	643190	411	Regulator of nucleoside diphosphate kinase	peg	gi|49175990|ref|NC_000913.2|_643190_642780		Transcription elongation factor		CDS	prokaryotic transcription elongation factor GreA/GreB		rnk	
-	643420	644226	807	Ribonuclease I precursor (EC 3.1.27.6)	peg	gi|49175990|ref|NC_000913.2|_644226_643420		Ribonuclease I	3.1.27.6	CDS	ribonuclease I	3.1.27.6	rna	
-	644340	645803	1464	Citrate Succinate antiporter (TC 2.A.47.3.2)	peg	gi|49175990|ref|NC_000913.2|_645770_644340		anion transporter		CDS	citrate carrier		citT	
-	645854	646732	879	2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (EC 2.7.8.25)	peg	gi|49175990|ref|NC_000913.2|_646726_645854		triphosphoribosyl-dephospho-CoA synthase CitG	2.7.8.25	CDS	triphosphoribosyl-dephospho-CoA synthase CitG	2.7.8.25	citG	
-	646707	647258	552	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61)	peg	gi|49175990|ref|NC_000913.2|_647258_646707		holo-ACP synthase CitX	2.7.7.61	CDS	holo-ACP synthase CitX	2.7.7.61	citX	
-	647262	648794	1533	Citrate lyase alpha chain (EC 4.1.3.6)	peg	gi|49175990|ref|NC_000913.2|_648794_647262		citrate lyase, alpha subunit	2.8.3.10, 4.1.3.6	CDS	citrate lyase, alpha subunit	2.8.3.10	citF	
-	648805	649713	909	Citrate lyase beta chain (EC 4.1.3.6)	peg	gi|49175990|ref|NC_000913.2|_649713_648805		citrate lyase, beta subunit	4.1.3.34, 4.1.3.6	CDS	citrate (pro-3S)-lyase, beta subunit	4.1.3.6	citE	
-	649710	650006	297	"Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6)"	peg	gi|49175990|ref|NC_000913.2|_650006_649710		citrate lyase acyl carrier protein	4.1.3.6	CDS	citrate lyase acyl carrier protein	4.1.3.6	citD	
-	650021	651079	1059	[Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)	peg	gi|49175990|ref|NC_000913.2|_651079_650021		[citrate (pro-3S)-lyase] ligase	6.2.1.22	CDS	[citrate (pro-3S)-lyase] ligase	6.2.1.22	citC	
+	651458	653116	1659	"Sensor kinase CitA, DpiB (EC 2.7.3.-)"	peg	gi|49175990|ref|NC_000913.2|_651458_653116		Signal transduction histidine kinase regulating citrate/malate metabolism	2.7.13.3	CDS	sensor histidine kinase DpiB	2.7.13.3	dpiB	
+	653085	653765	681	"Transcriptional regulatory protein CitB, DpiA"	peg	gi|49175990|ref|NC_000913.2|_653085_653765		Response regulator of citrate/malate metabolism		CDS	transcriptional regulatory protein DpiA		dpiA	
-	653806	655191	1386	C4-dicarboxylate transporter DcuC (TC 2.A.61.1.1)	peg	gi|49175990|ref|NC_000913.2|_655191_653806		c4-dicarboxylate anaerobic carrier family protein		CDS	transporter, anaerobic C4-dicarboxylate uptake C family protein			
+	655780	656340	561	"Lipid A acylation protein PagP, palmitoyltransferase"	peg	gi|49175990|ref|NC_000913.2|_655780_656340		Antimicrobial peptide resistance and lipid A acylation PagP	2.3.1.-	CDS	antimicrobial peptide resistance and lipid A acylation PagP family protein			
+	656515	656724	210	Cold shock protein CspE	peg	gi|49175990|ref|NC_000913.2|_656515_656724		cold shock protein E (CspE)		CDS	RNA chaperone, negative regulator of cspA transcription		cspE	
+	656345	656772	428										
-	656778	657161	384	CrcB protein	peg	gi|49175990|ref|NC_000913.2|_657161_656778		camphor resistance protein CrcB		CDS	protein CrcB		crcB	
+	657254	657481	228	Carbon-nitrogen hydrolase	peg	gi|49175990|ref|NC_000913.2|_657254_657481		hypothetical protein		CDS	putative amidase			
+	657478	658041	564	Carbon-nitrogen hydrolase	peg	gi|49175990|ref|NC_000913.2|_657478_658041		Predicted amidohydrolase		CDS	carbon-nitrogen hydrolase family protein			
+	658170	658373	204	Twin-arginine translocation protein TatE	peg	gi|49175990|ref|NC_000913.2|_658170_658373		Sec-independent protein translocase TatE		CDS	twin arginine-targeting translocase, TatA/E family protein		tatA	
-	658474	659439	966	Lipoate synthase	peg	gi|49175990|ref|NC_000913.2|_659439_658474		lipoate synthase	2.8.1.8	CDS	lipoyl synthase	2.8.1.8	lipA	
-	659648	660601	954	LysR-family transcriptional regulator YbeF	peg	gi|49175990|ref|NC_000913.2|_660601_659648		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	660860	661501	642	Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase	peg	gi|49175990|ref|NC_000913.2|_661501_660860		lipoate-protein ligase B	2.3.1.181	CDS	lipoyl(octanoyl) transferase	2.3.1.181	lipB	
-	661602	661865	264	Proposed lipoate regulatory protein YbeD	peg	gi|49175990|ref|NC_000913.2|_661865_661602		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	661975	663258	1284	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|49175990|ref|NC_000913.2|_663258_661975		penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase dacA	3.5.2.6	dacA	
-	663325	664413	1089	Rare lipoprotein A precursor	peg	gi|49175990|ref|NC_000913.2|_664413_663325		rare lipoprotein A		CDS	rare lipoprotein A		rlpA	
-	664424	665536	1113	rod shape-determining membrane protein	peg	gi|49175990|ref|NC_000913.2|_665536_664424		cell elongation-specific peptidoglycan biosynthesis regulator RodA		CDS	rod shape-determining protein RodA		mrdB	
-	665539	667440	1902	Penicillin-binding protein 2 (PBP-2)	peg	gi|49175990|ref|NC_000913.2|_667440_665539		penicillin-binding protein 2		CDS	penicillin-binding protein 2		mrdA	
-	667471	667938	468	LSU m3Psi1915 methyltransferase RlmH	peg	gi|49175990|ref|NC_000913.2|_667938_667471		23S rRNA (pseudouridine-1915-N(3)-) methyltransferase	2.1.1.177	CDS	rRNA large subunit m3Psi methyltransferase RlmH	2.1.-.-	rlmH	
-	667942	668259	318	Iojap protein	peg	gi|49175990|ref|NC_000913.2|_668259_667942		iojap-like ribosome-associated protein		CDS	conserved hypothetical protein			
-	668519	669130	612	Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	peg	gi|49175990|ref|NC_000913.2|_669130_668519		alpha-ribazole phosphatase	3.1.3.73	CDS	alpha-ribazole phosphatase	3.1.3.73	cobC	
-	669154	669795	642	Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	peg	gi|49175990|ref|NC_000913.2|_669795_669154		nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	2.7.7.18	CDS	nicotinate (nicotinamide) nucleotide adenylyltransferase	2.7.7.18	nadD	
-	669797	670828	1032	DNA polymerase III delta subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_670828_669797		DNA polymerase III, delta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, delta subunit	2.7.7.7	holA	
-	670828	671409	582	LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)	peg	gi|49175990|ref|NC_000913.2|_671409_670828		Rare lipoprotein B		CDS	LPS-assembly lipoprotein lptE		lptE	
-	671424	674006	2583	Leucyl-tRNA synthetase (EC 6.1.1.4)	peg	gi|49175990|ref|NC_000913.2|_674006_671424		leucyl-tRNA synthetase (EC 6.1.1.4)	6.1.1.4	CDS	leucine--tRNA ligase	6.1.1.4	leuS	
+	674241	674723	483	COG2433: Uncharacterized conserved protein	peg	gi|49175990|ref|NC_000913.2|_674241_674723		Protein of unknown function (DUF1451).		CDS	conserved hypothetical protein			
-	674793	675770	978	FIG00639187: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_675770_674793		FOG: TPR repeat, SEL1 subfamily		CDS	sel1 repeat family protein			
+	675934	676641	708	Uncharacterized protein YbeR	peg	gi|49175990|ref|NC_000913.2|_675934_676641		Protein of unknown function (DUF1266).		CDS	conserved hypothetical protein			
+	676638	678065	1428	FIG00638911: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_676638_678065		DnaJ domain.		CDS	dnaJ domain protein			
-	678075	678629	555	FIG00639103: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_678629_678075		Sel1 repeat.		CDS	sel1 repeat family protein			
+	678731	679438	708	FIG00637867: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_678731_679438		Protein of unknown function (DUF1266).		CDS	conserved hypothetical protein			
+	679435	680886	1452	FIG00638911: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_679435_680886		hypothetical protein		CDS	dnaJ domain protein			
-	680946	682616	1671	Chaperone protein DnaK	peg	gi|49175990|ref|NC_000913.2|_682616_680946		Molecular chaperone		CDS	hsp70 family protein			
-	682700	683635	936	Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	peg	gi|49175990|ref|NC_000913.2|_683635_682700		Inosine-uridine nucleoside N-ribohydrolase	3.2.-	CDS	pyrimidine-specific ribonucleoside hydrolase rihA	3.2.-.-	rihA	
-	683753	684478	726	Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_684478_683753		L-glutamate ABC transporter ATP-binding protein/L-aspartate ABC transporter ATP-binding protein	3.6.3.-	CDS	ABC transporter family protein			
-	684478	685152	675	Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_685152_684478		L-glutamate ABC transporter membrane protein/L-aspartate ABC transporter membrane protein		CDS	amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			
-	685152	685892	741	Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_685892_685152		L-glutamate ABC transporter membrane protein/L-aspartate ABC transporter membrane protein		CDS	amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			
-	685904	686066	163										
-	686062	686970	909	Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_686970_686062		L-glutamate-binding protein/L-aspartate-binding protein		CDS	glutamate/aspartate periplasmic-binding protein		gltI	
-	687220	688236	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_688236_687220		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
-	688566	690104	1539	Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE	peg	gi|49175990|ref|NC_000913.2|_690104_688566		Apolipoprotein N-acyltransferase	2.3.1.-	CDS	apolipoprotein N-acyltransferase	2.3.1.-	lnt	
-	690129	691007	879	Magnesium and cobalt efflux protein CorC	peg	gi|49175990|ref|NC_000913.2|_691007_690129		Putative Mg2+ and Co2+ transporter CorC		CDS	magnesium and cobalt efflux protein CorC		corC	
-	691097	691564	468	"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"	peg	gi|49175990|ref|NC_000913.2|_691564_691097		metalloprotein, YbeY/UPF0054 family		CDS	putative rRNA maturation factor YbeY			
-	691561	692640	1080	Phosphate starvation-inducible ATPase PhoH with RNA binding motif	peg	gi|49175990|ref|NC_000913.2|_692601_691561		Phosphate starvation-inducible protein PhoH, predicted ATPase		CDS	phoH-like protein		ybeZ	
-	692754	694178	1425	tRNA-i(6)A37 methylthiotransferase	peg	gi|49175990|ref|NC_000913.2|_694178_692754		tRNA-i(6)A37 thiotransferase enzyme MiaB		CDS	tRNA-i(6)A37 thiotransferase enzyme MiaB	2.-.-.-	miaB	
+	694324	695499	1176	"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)"	peg	gi|49175990|ref|NC_000913.2|_694324_695499		Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	1.14.13.-	CDS	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	1.14.13.-	ubiF	
-	696736	698400	1665	Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)	peg	gi|49175990|ref|NC_000913.2|_698400_696736		asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4)	6.3.5.4	CDS	asparagine synthase	6.3.5.4	asnB	
+	698369	698533	165	putative lipoprotein	peg	gi|49175990|ref|NC_000913.2|_698369_698533					putative lipoprotein			
-	698797	699549	753	Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem	peg	gi|49175990|ref|NC_000913.2|_699549_698797		Predicted sugar phosphatases of the HAD superfamily		CDS	HAD hydrolase, IA, variant 1 family protein			
-	699597	700817	1221	"N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family"	peg	gi|49175990|ref|NC_000913.2|_700817_699597		N-acetylglucosamine repressor, NagC		CDS	ROK family protein			
-	700826	701974	1149	N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)	peg	gi|49175990|ref|NC_000913.2|_701974_700826		N-acetylglucosamine 6-phosphate deacetylase (EC 3.5.1.25)	3.5.1.25	CDS	N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25	nagA	
-	702034	702834	801	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)	peg	gi|49175990|ref|NC_000913.2|_702834_702034		glucosamine-6-phosphate deaminase (EC 3.5.99.6)	3.5.99.6	CDS	glucosamine-6-phosphate deaminase	3.5.99.6	nagB	
+	703167	705113	1947	"PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_703167_705113		PTS system N-acetylglucosamine-specific IIA component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)		CDS	PTS system, N-acetylglucosamine-specific IIBC component	2.7.1.69	nagE	
+	705316	706980	1665	Glutaminyl-tRNA synthetase (EC 6.1.1.18)	peg	gi|49175990|ref|NC_000913.2|_705316_706980		glutaminyl-tRNA synthetase (EC 6.1.1.18)	6.1.1.18	CDS	glutamine--tRNA ligase	6.1.1.18	glnS	
+	707557	708963	1407	N-acetylglucosamine-regulated outer membrane porin	peg	gi|49175990|ref|NC_000913.2|_707557_708963		outer membrane porin, OprD family.		CDS	outer membrane porin, OprD family protein			
+	709013	709339	327	Hypothetical lipoprotein ybfN precursor	peg	gi|49175990|ref|NC_000913.2|_709013_709339		YbfN-like lipoprotein.		CDS	ybfN-like lipofamily protein			
-	709423	709869	447	Ferric uptake regulation protein FUR	peg	gi|49175990|ref|NC_000913.2|_709869_709423		Fe2+/Zn2+ uptake regulation proteins		CDS	ferric uptake regulation protein		fur	
-	710158	710688	531	Flavodoxin 1	peg	gi|49175990|ref|NC_000913.2|_710688_710158		flavodoxin, long chain		CDS	flavodoxin			
-	710828	711190	363	Uncharacterized protein ybfE	peg	gi|49175990|ref|NC_000913.2|_711121_710828		Ribbon-helix-helix protein, copG family.		CDS	ribbon-helix-helix , copG family protein			
-	711261	712025	765	Esterase ybfF (EC 3.1.-.-)	peg	gi|49175990|ref|NC_000913.2|_712025_711261		Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	esterase ybfF	3.1.-.-	ybfF	
+	712210	712755	546	"SeqA protein, negative modulator of initiation of replication"	peg	gi|49175990|ref|NC_000913.2|_712210_712755		negative regulator of replication initiation SeqA		CDS	protein seqA		seqA	
-	714396	714599	204	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_714599_714396								
+	712781	714421	1641	Phosphoglucomutase (EC 5.4.2.2)	peg	gi|49175990|ref|NC_000913.2|_712781_714421		phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	CDS	phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	pgm	
+	714635	715129	495	Hypothetical lipoprotein ybfP precursor	peg	gi|49175990|ref|NC_000913.2|_714635_715129		hypothetical protein		CDS	conserved hypothetical protein			
-	715170	715532	363	FIG00638110: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_715532_715170					conserved hypothetical protein			
-	715611	715820	210	FIG00638110: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_715820_715611		Protein of unknown function DUF2625.		CDS	conserved hypothetical protein			
-	716169	717488	1320	"Putrescine/proton symporter, putrescine/ornithine antiporter PotE"	peg	gi|49175990|ref|NC_000913.2|_717488_716169		putrescine:ornithine antiporter, APA family (TC 2.A.3.2.1)		CDS	putrescine-ornithine antiporter		potE	
-	717485	719683	2199	Ornithine decarboxylase (EC 4.1.1.17)	peg	gi|49175990|ref|NC_000913.2|_719683_717485		ornithine decarboxylase (EC 4.1.1.17)	4.1.1.17	CDS	orn/Lys/Arg decarboxylase, N-terminal domain protein			
+	719806	720063	258				hypothetical protein		CDS				
-	720279	720956	678	DNA-binding response regulator KdpE	peg	gi|49175990|ref|NC_000913.2|_720956_720279		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	KDP operon transcriptional regulatory protein KdpE		kdpE	
-	720953	723637	2685	Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_723637_720953		Osmosensitive K+ channel histidine kinase	2.7.13.3	CDS	sensor protein KdpD	2.7.13.3	kdpD	
-	723630	724202	573	Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	peg	gi|49175990|ref|NC_000913.2|_724202_723630		K+-transporting ATPase, C subunit	3.6.3.12	CDS	K+-transporting ATPase, C subunit	3.6.3.12	kdpC	
-	724211	726259	2049	Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	peg	gi|49175990|ref|NC_000913.2|_726259_724211		K+-transporting ATPase, B subunit	3.6.3.12	CDS	K+-transporting ATPase, B subunit	3.6.3.12	kdpB	
-	726282	727955	1674	Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	peg	gi|49175990|ref|NC_000913.2|_727955_726282		K+-transporting ATPase, KdpA	3.6.3.12	CDS	K+-transporting ATPase, A subunit	3.6.3.12	kdpA	
-	727955	728158	204	FIG00637855: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_728158_727955					K+-transporting ATPase, F subunit	3.6.3.12	kdpF	
+	728357	728563	207	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_728357_728563		Protein of unknown function (DUF2517).		CDS	conserved hypothetical protein			
+	728806	732999	4194	core protein	peg	gi|49175990|ref|NC_000913.2|_728806_732999		RHS repeat-associated core domain		CDS	protein rhsC		rhsC	
+	732999	733325	327				hypothetical protein		CDS				
+	733443	734876	1434	core protein	peg	gi|49175990|ref|NC_000913.2|_733443_734876		RHS repeat-associated core domain		CDS	RHS repeat-associated core domain protein			
+	734873	735442	570	"orf, hypothetical protein"	peg	gi|49175990|ref|NC_000913.2|_734873_735442		hypothetical protein		CDS	conserved hypothetical protein			
+	735668	735922	255	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_735668_735922		Transposase		CDS	DDE_Tnp_1-associated family protein			
+	736141	737184	1044	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_736141_737184		Transposase		CDS	H repeat-associated protein yhhI		yhhI	
+	737315	738076	762	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_737315_738076		Transposase		CDS	H repeat-associated protein ydcC		ydcC	
+	738224	738733	510	FIG143828: Hypothetical protein YbgA	peg	gi|49175990|ref|NC_000913.2|_738224_738733		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	738730	740148	1419	Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	peg	gi|49175990|ref|NC_000913.2|_738730_740148		deoxyribodipyrimidine photo-lyase type I	4.1.99.3	CDS	deoxyribodipyrimidine photo-lyase	4.1.99.3	phrB	
-	740298	741779	1482	Di/tripeptide permease YbgH	peg	gi|49175990|ref|NC_000913.2|_741779_740298		amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	dipeptide permease D		dtpD	
+	742050	742793	744	FIG137478: Hypothetical protein YbgI	peg	gi|49175990|ref|NC_000913.2|_742050_742793		dinuclear metal center protein, YbgI/SA1388 family		CDS	conserved hypothetical protein			
+	742816	743472	657	Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)	peg	gi|49175990|ref|NC_000913.2|_742816_743472		TIGR00370 family protein		CDS	allophanate hydrolase subunit 1 family protein			
+	743466	744398	933	Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)	peg	gi|49175990|ref|NC_000913.2|_743466_744398		biotin-dependent carboxylase uncharacterized domain		CDS	conserved hypothetical protein			
+	744388	745122	735	Lactam utilization protein LamB	peg	gi|49175990|ref|NC_000913.2|_744388_745122		Uncharacterized proteins, homologs of lactam utilization protein B		CDS	conserved hypothetical protein			
-	745946	746992	1047	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_746992_745946		membrane protein AbrB duplication		CDS	membrane AbrB duplication domain protein			
+	745158	745949	792	Endonuclease VIII	peg	gi|49175990|ref|NC_000913.2|_745158_745949		Formamidopyrimidine-DNA glycosylase	3.2.2.-, 4.2.99.18	CDS	endonuclease 8	4.2.99.18	nei	
-	747144	748205	1062	FIG00637862: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_748205_747144		Fimbrial protein.		CDS	fimbrial family protein			
-	748202	748930	729	Putative chaperone	peg	gi|49175990|ref|NC_000913.2|_748930_748202		P pilus assembly protein, chaperone PapD		CDS	chaperone protein papD		papD	
-	748945	751392	2448	Uncharacterized outer membrane usher protein yqiG precursor	peg	gi|49175990|ref|NC_000913.2|_751392_748945		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
-	751452	752018	567	Uncharacterized fimbrial-like protein ygiL precursor	peg	gi|49175990|ref|NC_000913.2|_752018_751452		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	752408	753691	1284	Citrate synthase (si) (EC 2.3.3.1)	peg	gi|49175990|ref|NC_000913.2|_753691_752408		citrate synthase (EC 2.3.3.1)	2.3.3.1	CDS	citrate (Si)-synthase	2.3.3.1	gltA	
+	754385	754789	405	Succinate dehydrogenase cytochrome b-556 subunit	peg	gi|49175990|ref|NC_000913.2|_754502_754789		succinate dehydrogenase subunit C (EC 1.3.5.1)		CDS	succinate dehydrogenase, cytochrome b556 subunit		sdhC	
+	754783	755130	348	Succinate dehydrogenase hydrophobic membrane anchor protein	peg	gi|49175990|ref|NC_000913.2|_754783_755130		succinate dehydrogenase subunit D (EC 1.3.5.1)		CDS	succinate dehydrogenase, hydrophobic membrane anchor protein		sdhD	
+	755130	756896	1767	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	peg	gi|49175990|ref|NC_000913.2|_755130_756896		succinate dehydrogenase subunit A (EC 1.3.5.1)	1.3.99.1	CDS	succinate dehydrogenase, flavoprotein subunit		sdhA	
+	756912	757628	717	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	peg	gi|49175990|ref|NC_000913.2|_756912_757628		succinate dehydrogenase and fumarate reductase iron-sulfur protein	1.3.99.1	CDS	succinate dehydrogenase iron-sulfur subunit	1.3.99.1	sdhB	
+	757929	760730	2802	2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	peg	gi|49175990|ref|NC_000913.2|_757929_760730		2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)	1.2.4.2	CDS	oxoglutarate dehydrogenase (succinyl-transferring), E1 component	1.2.4.2	sucA	
+	760745	761962	1218	Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)	peg	gi|49175990|ref|NC_000913.2|_760745_761962		2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61)	2.3.1.61	CDS	dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex	2.3.1.61	sucB	
+	762237	763403	1167	Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)	peg	gi|49175990|ref|NC_000913.2|_762237_763403		succinyl-CoA synthetase (ADP-forming) beta subunit (EC 6.2.1.5)	6.2.1.5	CDS	succinyl-CoA ligase [ADP-forming] subunit beta	6.2.1.5	sucC	
+	763403	764272	870	Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)	peg	gi|49175990|ref|NC_000913.2|_763403_764272		succinyl-CoA synthetase (ADP-forming) alpha subunit (EC 6.2.1.5)	6.2.1.5	CDS	succinyl-CoA ligase [ADP-forming] subunit alpha	6.2.1.5	sucD	
-	764376	765098	723	Transcriptional regulator of succinyl CoA synthetase operon	peg	gi|49175990|ref|NC_000913.2|_765098_764376		transcriptional regulator, GntR family		CDS	mannosyl-D-glycerate transport/metabolism system repressor mngR		mngR	
+	765267	767183	1917	PTS system HrsA EIIA component / PTS system HrsA EIIB component / PTS system HrsA permease IIC component	peg	gi|49175990|ref|NC_000913.2|_765267_767183		PTS system mannosylglycerate-specific IIA component, Fru family (TC 4.A.2.1.3)/PTS system mannosylglycerate-specific IIB component, Fru family (TC 4.A.2.1.3)/PTS system mannosylglycerate-specific IIC component, Fru family (TC 4.A.2.1.3)		CDS	heat-responsive suppressor hrsA	2.7.1.69	hrsA	
+	767201	769834	2634	Alpha-mannosidase (EC 3.2.1.24)	peg	gi|49175990|ref|NC_000913.2|_767201_769834		Alpha-mannosidase	3.2.1.170	CDS	alpha-mannosidase mngB	3.2.1.-	mngB	
+	769859	770086	228	FIG00640343: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_769859_770086								
+	770681	772249	1569	Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_770681_772249		cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10)	1.10.3.-	CDS	cytochrome d ubiquinol oxidase subunit 1	1.10.3.-	cydA	
+	772265	773404	1140	Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_772265_773404		cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10)	1.10.3.-	CDS	cytochrome d ubiquinol oxidase, subunit II	1.10.3.-	cydB	
+	773532	773825	294	Protein YbgE	peg	gi|49175990|ref|NC_000913.2|_773532_773825		cyd operon protein YbgE		CDS	cyd operon protein YbgE			
+	773975	774379	405	4-hydroxybenzoyl-CoA thioesterase family active site	peg	gi|49175990|ref|NC_000913.2|_773975_774379		tol-pal system-associated acyl-CoA thioesterase	3.1.2.-	CDS	tol-pal system-associated acyl-CoA thioesterase	3.1.2.-	ybgC	
+	774376	775068	693	MotA/TolQ/ExbB proton channel family protein	peg	gi|49175990|ref|NC_000913.2|_774385_775068		Cell division and transport-associated protein TolQ (TC 2.C.1.2.1)		CDS	protein TolQ		tolQ	
+	775072	775500	429	"Tol biopolymer transport system, TolR protein"	peg	gi|49175990|ref|NC_000913.2|_775072_775500		Cell division and transport-associated protein TolR (TC 2.C.1.2.1)		CDS	protein TolR		tolR	
+	775565	776830	1266	TolA protein	peg	gi|49175990|ref|NC_000913.2|_775565_776830		Cell division and transport-associated protein TolA (TC 2.C.1.2.1)		CDS	protein TolA		tolA	
+	776963	778255	1293	"tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins"	peg	gi|49175990|ref|NC_000913.2|_776963_778255		tol-pal system beta propeller repeat protein TolB		CDS	tol-Pal system beta propeller repeat protein TolB		tolB	
+	778290	778811	522	18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor	peg	gi|49175990|ref|NC_000913.2|_778290_778811		peptidoglycan-associated lipoprotein		CDS	peptidoglycan-associated lipoprotein		pal	
+	778821	779612	792	TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain	peg	gi|49175990|ref|NC_000913.2|_778821_779612		tol-pal system protein YbgF		CDS	tol-pal system protein YbgF		ygbF	
+	781308	782351	1044	Quinolinate synthetase (EC 2.5.1.72)	peg	gi|49175990|ref|NC_000913.2|_781317_782351		quinolinate synthetase (EC 2.5.1.72)	2.5.1.72	CDS	quinolinate synthetase complex, A subunit	2.5.1.72	nadA	
-	783105	784046	942	Zinc transporter ZitB	peg	gi|49175990|ref|NC_000913.2|_784046_783105		cation diffusion facilitator family transporter		CDS	zinc transporter zitB		zitB	
+	782389	783108	720	"Ribosyl nicotinamide transporter, PnuC-like"	peg	gi|49175990|ref|NC_000913.2|_782404_783108		nicotinamide mononucleotide transporter PnuC		CDS	nicotinamide riboside transporter pnuC		pnuC	
-	784160	784540	381	Probable secreted protein	peg	gi|49175990|ref|NC_000913.2|_784540_784160		YbgS-like protein.		CDS	ybgS-like family protein			
+	784856	785908	1053	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	peg	gi|49175990|ref|NC_000913.2|_784856_785908		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		
-	786066	786818	753	Phosphoglycerate mutase (EC 5.4.2.1)	peg	gi|49175990|ref|NC_000913.2|_786818_786066		phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	5.4.2.1	gpmA	
-	787020	788060	1041	Aldose 1-epimerase (EC 5.1.3.3)	peg	gi|49175990|ref|NC_000913.2|_788060_787020		aldose 1-epimerase (EC 5.1.3.3)	5.1.3.3	CDS	galactose mutarotase	5.1.3.-	galM	
-	788054	789202	1149	Galactokinase (EC 2.7.1.6)	peg	gi|49175990|ref|NC_000913.2|_789202_788054		galactokinase (EC 2.7.1.6)	2.7.1.6	CDS	galactokinase	2.7.1.6	galK	
-	789206	790252	1047	Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)	peg	gi|49175990|ref|NC_000913.2|_790252_789206		UTP-hexose-1-phosphate uridylyltransferase (EC 2.7.7.10)/UDP-glucose-hexose-1-phosphate uridylyltransferase (EC 2.7.7.12)	2.7.7.12	CDS	galactose-1-phosphate uridylyltransferase	2.7.7.10	galT	
-	790262	791278	1017	UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2)	peg	gi|49175990|ref|NC_000913.2|_791278_790262		UDP-galactose 4-epimerase (EC 5.1.3.2)	5.1.3.2	CDS	UDP-glucose 4-epimerase	5.1.3.2	galE	
-	791539	793011	1473	Putative molybdenum transport ATP-binding protein modF	peg	gi|49175990|ref|NC_000913.2|_793011_791539		ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA		CDS	ABC transporter family protein			
-	793079	793867	789	DNA-binding domain of ModE / Molybdate-binding domain of ModE	peg	gi|49175990|ref|NC_000913.2|_793867_793079		molybdate transport repressor, ModE		CDS	transcriptional regulator modE		modE	
+	794312	795085	774	"Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)"	peg	gi|49175990|ref|NC_000913.2|_794312_795085		molybdenum ABC transporter, periplasmic molybdate-binding protein		CDS	molybdate ABC transporter, periplasmic molybdate-binding protein		modA	
+	795085	795774	690	Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)	peg	gi|49175990|ref|NC_000913.2|_795085_795774		molybdate ABC transporter, permease protein		CDS	molybdate ABC transporter, permease protein		modB	
+	795777	796835	1059	Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)	peg	gi|49175990|ref|NC_000913.2|_795777_796835		molybdenum ABC transporter, ATP-binding protein	3.6.3.29	CDS	molybdate ABC transporter, ATP-binding protein	3.6.3.29	modC	
-	796836	797654	819	Putative phosphatase	peg	gi|49175990|ref|NC_000913.2|_797654_796836		HAD-superfamily hydrolase, subfamily IIB		CDS	cof-like hydrolase family protein			
+	797809	798804	996	6-phosphogluconolactonase (EC 3.1.1.31)	peg	gi|49175990|ref|NC_000913.2|_797809_798804		3-carboxymuconate cyclase	3.1.1.31	CDS	lactonase, 7-bladed beta-propeller family protein			
-	798845	799798	954	LysR family transcriptional regulator YbhD	peg	gi|49175990|ref|NC_000913.2|_799798_798845		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	799982	801034	1053	FIG00637898: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_799982_801034		Uncharacterized protein conserved in bacteria		CDS	prpF family protein			
+	801110	802543	1434	2-oxoglutarate/malate translocator	peg	gi|49175990|ref|NC_000913.2|_801110_802543		anion transporter		CDS	inner membrane protein ybhI		ybhI	
+	802726	804987	2262	Putative enzyme	peg	gi|49175990|ref|NC_000913.2|_802726_804987		Aconitase A	4.2.1.3	CDS	aconitase C-terminal domain protein			
-	805221	806504	1284	Pectinesterase (EC 3.1.1.11)	peg	gi|49175990|ref|NC_000913.2|_806504_805221		Pectin methylesterase	3.1.1.11	CDS	putative acyl-CoA thioester hydrolase ybhC			
-	806656	807132	477	UPF0098 protein ybhB	peg	gi|49175990|ref|NC_000913.2|_807132_806656		phospholipid-binding protein, PBP family		CDS	conserved hypothetical protein			
-	807191	808480	1290	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	peg	gi|49175990|ref|NC_000913.2|_808423_807191		adenosylmethionine-8-amino-7-oxononanoate transaminase	2.6.1.62	CDS	adenosylmethionine-8-amino-7-oxononanoate transaminase	2.6.1.62	bioA	
+	808567	809607	1041	Biotin synthase (EC 2.8.1.6)	peg	gi|49175990|ref|NC_000913.2|_808567_809607		biotin synthase (EC 2.8.1.6)	2.8.1.6	CDS	biotin synthase	2.8.1.6	bioB	
+	809604	810758	1155	8-amino-7-oxononanoate synthase (EC 2.3.1.47)	peg	gi|49175990|ref|NC_000913.2|_809604_810758		8-amino-7-oxononanoate synthase (EC 2.3.1.47)	2.3.1.47	CDS	8-amino-7-oxononanoate synthase	2.3.1.47	bioF	
+	810745	811500	756	Biotin synthesis protein BioC	peg	gi|49175990|ref|NC_000913.2|_810745_811500		pimeloyl-CoA biosynthesis protein BioC	2.1.1.197	CDS	malonyl-CoA O-methyltransferase BioC	2.1.1.197	bioC	
+	811493	812170	678	Dethiobiotin synthetase (EC 6.3.3.3)	peg	gi|49175990|ref|NC_000913.2|_811493_812170		dethiobiotin synthase	6.3.3.3	CDS	dethiobiotin synthase	6.3.3.3	bioD	
+	812749	814770	2022	Excinuclease ABC subunit B	peg	gi|49175990|ref|NC_000913.2|_812749_814770		Excinuclease ABC subunit B		CDS	excinuclease ABC subunit B	3.1.25.-	uvrB	
-	814962	815870	909	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_815870_814962		conserved hypothetical protein, cofD-related		CDS	conserved hypothetical family protein			
+	816267	817256	990	Molybdenum cofactor biosynthesis protein MoaA	peg	gi|49175990|ref|NC_000913.2|_816267_817256		cyclic pyranopterin monophosphate synthase subunit MoaA (EC 4.1.99.18)		CDS	molybdenum cofactor biosynthesis protein A		moaA	
+	817278	817790	513	Molybdenum cofactor biosynthesis protein MoaB	peg	gi|49175990|ref|NC_000913.2|_817278_817790		molybdenum cofactor biosynthesis protein B, proteobacterial		CDS	molybdenum cofactor biosynthesis protein B		moaB	
+	817793	818278	486	Molybdenum cofactor biosynthesis protein MoaC	peg	gi|49175990|ref|NC_000913.2|_817793_818278		cyclic pyranopterin monophosphate synthase subunit MoaC (EC 4.1.99.18)		CDS	molybdenum cofactor biosynthesis protein C		moaC	
+	818271	818516	246	Molybdenum cofactor biosynthesis protein MoaD	peg	gi|49175990|ref|NC_000913.2|_818271_818516		molybdopterin synthase subunit MoaD (EC 2.8.1.12)		CDS	molybdopterin converting factor, subunit 1		moaD	
+	818518	818970	453	Molybdenum cofactor biosynthesis protein MoaE	peg	gi|49175990|ref|NC_000913.2|_818518_818970		molybdopterin synthase subunit MoaE (EC 2.8.1.12)	2.-	CDS	molybdopterin synthase catalytic subunit	2.-.-.-	moaE	
+	819107	819811	705	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_819167_819811		Integral membrane protein, interacts with FtsH		CDS	inner membrane protein YbhL		ybhL	
+	820016	820729	714	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_820214_820729		Integral membrane protein, interacts with FtsH		CDS	inhibitor of apoptosis-promoting Bax1 family protein			
-	820765	821721	957	Inner membrane protein YbhQ	peg	gi|49175990|ref|NC_000913.2|_821721_820765		Predicted integral membrane protein		CDS	inner membrane protein ybhN		ybhN	
-	821721	822962	1242	Cardiolipin synthetase (EC 2.7.8.-)	peg	gi|49175990|ref|NC_000913.2|_822962_821721		Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	2.7.8.-	CDS	putative cardiolipin synthase YbhO			
-	822959	823720	762	Endonuclease/Exonuclease/phosphatase family protein	peg	gi|49175990|ref|NC_000913.2|_823720_822959		Metal-dependent hydrolase		CDS	endonuclease/Exonuclease/phosphatase family protein			
-	824225	825331	1107	"ABC transport system, permease component YbhR"	peg	gi|49175990|ref|NC_000913.2|_825331_824225		ABC-type multidrug transport system, permease component		CDS	inner membrane transport permease ybhR		ybhR	
+	823853	824263	411	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_823853_824263		Putative inner membrane protein YbhQ.		CDS	inner membrane protein ybhQ		ybhQ	
-	825342	826475	1134	"ABC transport system, permease component YbhS"	peg	gi|49175990|ref|NC_000913.2|_826475_825342		ABC-type multidrug transport system, permease component		CDS	inner membrane transport permease ybhS		ybhS	
-	826468	828204	1737	"ABC transporter multidrug efflux pump, fused ATP-binding domains"	peg	gi|49175990|ref|NC_000913.2|_828204_826468		ABC-type multidrug transport system, ATPase component		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
-	828197	829192	996	"Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG"	peg	gi|49175990|ref|NC_000913.2|_829192_828197		Multidrug resistance efflux pump		CDS	efflux transporter, RND family, MFP subunit			
-	829195	829866	672	"Transcriptional regulator YbiH, TetR family"	peg	gi|49175990|ref|NC_000913.2|_829866_829195		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	830095	831459	1365	ATP-dependent RNA helicase RhlE	peg	gi|49175990|ref|NC_000913.2|_830095_831459		Superfamily II DNA and RNA helicases	3.6.4.13	CDS	ATP-dependent RNA helicase rhlE	3.6.4.13	rhlE	
-	831691	832140	450	Uncharacterized protein COG3236	peg	gi|49175990|ref|NC_000913.2|_832140_831691		conserved hypothetical protein, ribA/ribD-fused		CDS	swarming motility protein ybiA		ybiA	
+	832158	834443	2286	ATP-dependent helicase DinG/Rad3	peg	gi|49175990|ref|NC_000913.2|_832158_834443		Rad3-related DNA helicases	3.6.4.12	CDS	DEAD/DEAH box helicase family protein			
+	834471	835433	963	Anthranilate phosphoribosyltransferase like (EC 2.4.2.18)	peg	gi|49175990|ref|NC_000913.2|_834471_835433		Anthranilate phosphoribosyltransferase		CDS	glycosyl transferase family, helical bundle domain protein			
+	835574	836659	1086	Malate dehydrogenase (EC 1.1.1.37)	peg	gi|49175990|ref|NC_000913.2|_835574_836659		Malate/L-lactate dehydrogenases	1.1.1.-	CDS	conserved hypothetical protein			
-	836888	837148	261	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_837148_836888		Protein of unknown function (DUF1471).		CDS	multiple stress resistance protein BhsA		bhsA	
-	837413	837679	267	Hypothetical Zinc-finger containing protein	peg	gi|49175990|ref|NC_000913.2|_837679_837413		transcriptional regulator, TraR/DksA family		CDS	conserved hypothetical protein			
-	837753	838430	678	Iron-uptake factor PiuC	peg	gi|49175990|ref|NC_000913.2|_838427_837753		Uncharacterized iron-regulated protein	1.14.11.-	CDS	PKHD-type hydroxylase Sbal_3634	1.14.11.-		
-	838472	840754	2283	Ferrichrome-iron receptor	peg	gi|49175990|ref|NC_000913.2|_840754_838472		TonB-dependent siderophore receptor		CDS	catecholate siderophore receptor fiu		fiu	
-	841019	841279	261	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_841279_841019		Protein of unknown function (DUF1471).		CDS	multiple stress resistance protein BhsA		bhsA	
-	842478	844703	2226	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel	peg	gi|49175990|ref|NC_000913.2|_844703_842478		Small-conductance mechanosensitive channel		CDS	mechanosensitive ion channel family protein			
+	841555	842481	927	Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51)	peg	gi|49175990|ref|NC_000913.2|_841555_842481		23S rRNA m(6)A-1618 methyltransferase (EC 2.1.1.48)	2.1.1.181	CDS	ribosomal RNA large subunit methyltransferase F	2.1.1.181	rlmF	
-	844964	845686	723	Glutamate transport ATP-binding protein	peg	gi|49175990|ref|NC_000913.2|_845686_844964		L-glutamine ABC transporter ATP-binding protein	3.6.3.-	CDS	ABC transporter family protein			
-	845683	846342	660	Glutamate transport membrane-spanning protein	peg	gi|49175990|ref|NC_000913.2|_846342_845683		L-glutamine ABC transporter membrane protein		CDS	amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			
-	846481	847227	747	"Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)"	peg	gi|49175990|ref|NC_000913.2|_847227_846481		L-glutamine-binding protein		CDS	bacterial extracellular solute-binding s, 3 family protein			
-	847631	848134	504	Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1)	peg	gi|49175990|ref|NC_000913.2|_848134_847631		DNA-binding ferritin-like protein (oxidative damage protectant)		CDS	DNA protection during starvation protein	1.16.-.-	dps	
-	848433	849320	888	Putative DMT superfamily metabolite efflux protein precursor	peg	gi|49175990|ref|NC_000913.2|_849260_848433		Predicted permease, DMT superfamily		CDS	inner membrane transporter rhtA		rhtA	
+	849673	850188	516	Outer membrane protein X precursor	peg	gi|49175990|ref|NC_000913.2|_849673_850188		Opacity protein and related surface antigens		CDS	outer membrane protein X		ompX	
-	850237	851820	1584	Putative integral membrane protein	peg	gi|49175990|ref|NC_000913.2|_851820_850237		Predicted membrane-associated, metal-dependent hydrolase		CDS	putative phosphoethanolamine transferase ybiP			
+	852406	852873	468	Mn-dependent transcriptional regulator MntR	peg	gi|49175990|ref|NC_000913.2|_852406_852873		iron (metal) dependent repressor, DtxR family		CDS	transcriptional regulator mntR		mntR	
+	852870	853988	1119	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_852870_853988		transporter, YbiR family		CDS	inner membrane protein YbiR		ybiR	
-	854047	854967	921	"L,D-transpeptidase YbiS"	peg	gi|49175990|ref|NC_000913.2|_854961_854047		Uncharacterized protein conserved in bacteria		CDS	putative L,D-transpeptidase YbiS			
+	855186	856778	1593	Putative ATPase component of ABC transporter with duplicated ATPase domain	peg	gi|49175990|ref|NC_000913.2|_855186_856778		ATPase components of ABC transporters with duplicated ATPase domains		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
-	857019	858284	1266	FIG01046262: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_858284_857019		Protein of unknown function (DUF1479).		CDS	conserved hypothetical protein			
-	858436	859251	816	Hydrolase (HAD superfamily)	peg	gi|49175990|ref|NC_000913.2|_859251_858436		HAD-superfamily hydrolase, subfamily IIB	3.1.3.23	CDS	sugar phosphatase SupH	3.1.3.23	supH	
-	859397	861829	2433	Pyruvate formate-lyase (EC 2.3.1.54)	peg	gi|49175990|ref|NC_000913.2|_861829_859397		pyruvate formate-lyase	2.3.1.54	CDS	glycyl radical enzyme, PFL2/glycerol dehydratase family protein			
-	861835	862734	900	Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	peg	gi|49175990|ref|NC_000913.2|_862734_861835		glycyl-radical enzyme activating protein family	1.97.1.4	CDS	glycyl-radical enzyme activating family protein	1.97.1.-		
+	862865	863527	663	Transaldolase (EC 2.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_862865_863527		fructose 6-phosphate aldolase (EC 4.1.2.-)	4.1.2.-	CDS	fructose-6-phosphate aldolase	4.1.2.-	fsa	
-	863603	864352	750	Molybdopterin biosynthesis protein MoeB	peg	gi|49175990|ref|NC_000913.2|_864352_863603		[molybdopterin synthase] sulfurylase		CDS	molybdopterin synthase sulfurylase MoeB		moeB	
-	864352	865587	1236	Molybdopterin biosynthesis protein MoeA	peg	gi|49175990|ref|NC_000913.2|_865587_864352		molybdopterin molybdochelatase (EC 2.10.1.1)		CDS	molybdopterin molybdenumtransferase	2.-.-.-	moeA	
+	865791	866756	966	Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase	peg	gi|49175990|ref|NC_000913.2|_865791_866756		asparaginase (EC 3.5.1.1)	3.4.19.5	CDS	isoaspartyl peptidase	3.4.19.5	iaaA	
+	866743	868614	1872	Glutothione ABC transporter ATP-binding protein	peg	gi|49175990|ref|NC_000913.2|_866743_868614		ATPase components of various ABC-type transport systems, contain duplicated ATPase		CDS	nickel import ATP-binding protein NikE	3.6.3.24	nikE	
+	868634	870172	1539	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein"	peg	gi|49175990|ref|NC_000913.2|_868634_870172		ABC-type dipeptide transport system, periplasmic component		CDS	glutathione-binding protein gsiB		gsiB	
+	870190	871110	921	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	peg	gi|49175990|ref|NC_000913.2|_870190_871110		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	glutathione transport system permease protein gsiC		gsiC	
+	871113	872024	912	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	peg	gi|49175990|ref|NC_000913.2|_871113_872024		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	glutathione transport system permease protein gsiD		gsiD	
+	872124	874550	2427	FIG00638993: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_872124_874550		FOG: EAL domain		CDS	putative cyclic di-GMP phosphodiesterase YliE			
+	874558	875886	1329	COG2199: FOG: GGDEF domain	peg	gi|49175990|ref|NC_000913.2|_874660_875886		diguanylate cyclase (GGDEF) domain		CDS	diguanylate cyclase domain protein			
-	875933	877258	1326	Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase	peg	gi|49175990|ref|NC_000913.2|_877258_875933		SSU ribosomal protein S12P methylthiotransferase (EC 2.-.-.-)	2.-	CDS	ribosomal protein S12 methylthiotransferase RimO		rimO	
+	877471	877854	384	biofilm regulator BssR	peg	gi|49175990|ref|NC_000913.2|_877471_877854		Biofilm formation protein (YliH/bssR).		CDS	biofilm formation family protein			
-	879077	879703	627	Uncharacterized glutathione S-transferase-like protein	peg	gi|49175990|ref|NC_000913.2|_879703_879077		Glutathione S-transferase		CDS	glutathione S-transferase, C-terminal domain protein			
+	877965	879080	1116	"Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-)"	peg	gi|49175990|ref|NC_000913.2|_877965_879080		Glucose/sorbosone dehydrogenases		CDS	soluble aldose sugar dehydrogenase yliI	1.1.5.-	yliI	
+	879941	881152	1212	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|49175990|ref|NC_000913.2|_879941_881152		penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase dacC	3.4.16.4	dacC	
-	881199	881957	759	"Deoxyribose operon repressor, DeoR family"	peg	gi|49175990|ref|NC_000913.2|_881957_881199		transcriptional regulator, DeoR family		CDS	deoxyribose operon repressor		deoR	
-	882015	882611	597	Putative permease	peg	gi|49175990|ref|NC_000913.2|_882611_882015		Undecaprenyl-diphosphatase (EC 3.6.1.27)	3.6.1.27	CDS	putative undecaprenyl-diphosphatase ybjG			
+	882896	884128	1233	Multidrug translocase MdfA	peg	gi|49175990|ref|NC_000913.2|_882896_884128		Arabinose efflux permease		CDS	multidrug transporter MdfA		mdfA	
-	884169	884447	279	FIG00639076: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_884447_884169		hypothetical protein		CDS	conserved hypothetical protein			
-	884539	885354	816	Protein ybjI	peg	gi|49175990|ref|NC_000913.2|_885354_884539		HAD-superfamily hydrolase, subfamily IIB		CDS	phosphatase YbjI	3.1.3.-	ybjI	
-	885354	886562	1209	Putative transport protein/putative regulator	peg	gi|49175990|ref|NC_000913.2|_886562_885354		Major Facilitator Superfamily.		CDS	inner membrane protein ybjJ		ybjJ	
+	886646	887182	537	"Transcriptional regulator, TetR family"	peg	gi|49175990|ref|NC_000913.2|_886646_887182		transcriptional regulator, TetR family		CDS	tetR-family transcriptional regulatory protein			
-	887357	889042	1686	"TrkA, Potassium channel-family protein"	peg	gi|49175990|ref|NC_000913.2|_889042_887357		Predicted permease		CDS	aspT/YidE/YbjL antiporter duplication domain protein			
+	889312	889689	378	Inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_889312_889689		Putative inner membrane protein of Enterobacteriaceae.		CDS	inner membrane protein ybjM		ybjM	
-	889719	889976	258	Glutaredoxin 1	peg	gi|49175990|ref|NC_000913.2|_889976_889719		Glutaredoxin, GrxA family		CDS	glutaredoxin, GrxA family		grxA	
+	890136	890423	288	hypothetical protein; Some similarities with putative membrane protein YbjC of Escherichia coli	peg	gi|49175990|ref|NC_000913.2|_890136_890423		Protein of unknown function (DUF1418).		CDS	conserved hypothetical protein			
+	890407	891129	723	Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_890407_891129		Nitroreductase	1.-	CDS	oxygen-insensitive NADPH nitroreductase	1.-.-.-	nfsA	
+	891190	892092	903	Ribosomal protein S6 glutaminyl transferase	peg	gi|49175990|ref|NC_000913.2|_891190_892092		SSU ribosomal protein S6P modification protein		CDS	alpha-L-glutamate ligases, RimK family protein			
+	892180	892656	477	putative sensory transduction regulator	peg	gi|49175990|ref|NC_000913.2|_892180_892656		Putative bacterial sensory transduction regulator.		CDS	bacterial sensory transduction regulator family protein			
+	893007	894119	1113	Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)	peg	gi|49175990|ref|NC_000913.2|_893007_894119		Spermidine/putrescine-binding periplasmic protein		CDS	putrescine-binding periplasmic protein		potF	
+	894214	895347	1134	Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2)	peg	gi|49175990|ref|NC_000913.2|_894214_895347		spermidine/putrescine ABC transporter ATP-binding subunit		CDS	polyamine ABC transporter, ATP-binding family protein	3.6.3.31		
+	895357	896310	954	Putrescine transport system permease protein PotH (TC 3.A.1.11.2)	peg	gi|49175990|ref|NC_000913.2|_895357_896310		ABC-type spermidine/putrescine transport system, permease component I		CDS	putrescine transport system permease protein PotH		potH	
+	896307	897152	846	Putrescine transport system permease protein PotI (TC 3.A.1.11.2)	peg	gi|49175990|ref|NC_000913.2|_896307_897152		ABC-type spermidine/putrescine transport system, permease component II		CDS	binding--dependent transport system inner membrane component family protein			
+	897212	897700	489	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_897212_897700		Protein of unknown function (DUF2593).		CDS	inner membrane protein ybjO		ybjO	
+	897741	898868	1128	23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_897792_898868		23S rRNA m(5)U-747 methyltransferase (EC 2.1.1.189)	2.1.1.189	CDS	23S rRNA (uracil-5-)-methyltransferase RumB	2.1.1.189	rumB	
-	899067	899798	732	"Arginine ABC transporter, periplasmic arginine-binding protein ArtJ"	peg	gi|49175990|ref|NC_000913.2|_899798_899067		L-arginine-binding protein		CDS	ABC transporter arginine-binding protein 1		artJ	
+	898904	899092	189	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_898904_899092								
-	900089	900757	669	"Arginine ABC transporter, permease protein ArtM"	peg	gi|49175990|ref|NC_000913.2|_900757_900089		L-arginine ABC transporter membrane protein		CDS	amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			
-	900757	901473	717	"Arginine ABC transporter, permease protein ArtQ"	peg	gi|49175990|ref|NC_000913.2|_901473_900757		L-arginine ABC transporter membrane protein		CDS	amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			
-	901480	902211	732	"Arginine ABC transporter, periplasmic arginine-binding protein ArtI"	peg	gi|49175990|ref|NC_000913.2|_902211_901480		L-arginine-binding protein		CDS	lysine-arginine-ornithine-binding periplasmic family protein			
-	902229	902957	729	"Arginine ABC transporter, ATP-binding protein ArtP"	peg	gi|49175990|ref|NC_000913.2|_902957_902229		L-arginine ABC transporter ATP-binding protein	3.6.3.-	CDS	arginine transport ATP-binding protein ArtP	3.6.3.-	artP	
-	903175	903690	516	probable lipoprotein	peg	gi|49175990|ref|NC_000913.2|_903690_903175		hypothetical protein		CDS	conserved hypothetical protein			
+	903816	904139	324	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_903816_904139		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	904963	906012	1050	Putative nucleotide di-P-sugar epimerase or dehydratase	peg	gi|49175990|ref|NC_000913.2|_906012_904963		Nucleoside-diphosphate-sugar epimerases		CDS	NAD dependent epimerase/dehydratase family protein			
+	904136	904966	831	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	peg	gi|49175990|ref|NC_000913.2|_904136_904966		Negative regulator of beta-lactamase expression	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase AmiD	3.5.1.28	amiD	
-	906075	907505	1431	FIG00638862: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_907505_906075		Predicted nucleoside-diphosphate-sugar epimerases		CDS	short chain dehydrogenase family protein			
-	907516	908517	1002	Low-specificity L-threonine aldolase (EC 4.1.2.5)	peg	gi|49175990|ref|NC_000913.2|_908517_907516		L-threonine aldolase (EC 4.1.2.5)	4.1.2.5	CDS	low specificity L-threonine aldolase	4.1.2.5	ltaE	
-	908554	910272	1719	"Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2)"	peg	gi|49175990|ref|NC_000913.2|_910272_908554		pyruvate dehydrogenase (quinone) (EC 1.2.5.1)	1.2.5.1	CDS	pyruvate dehydrogenase [ubiquinone]	1.2.5.1	poxB	
-	910405	911373	969	NADH oxidoreductase hcr (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_911373_910405		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.-	CDS	NADH oxidoreductase hcr	1.-.-.-	hcr	
-	911385	913037	1653	Hydroxylamine reductase (EC 1.7.-.-)	peg	gi|49175990|ref|NC_000913.2|_913037_911385		hydroxylamine reductase precursor (EC 1.7.99.1)	1.7.-	CDS	hydroxylamine reductase	1.-.-.-	hcp	
-	913181	914080	900	FIG003145: Surface protein	peg	gi|49175990|ref|NC_000913.2|_914080_913181		Predicted membrane protein		CDS	conserved hypothetical protein			
-	914575	915279	705	Aquaporin Z	peg	gi|49175990|ref|NC_000913.2|_915279_914575		MIP family channel proteins		CDS	aquaporin Z		aqpZ	
-	917351	918343	993	Virulence factor VirK	peg	gi|49175990|ref|NC_000913.2|_918343_917351		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	915696	917354	1659	"Predicted ATP-dependent endonuclease of the OLD family, YbjD subgroup"	peg	gi|49175990|ref|NC_000913.2|_915696_917354		Predicted ATP-dependent endonuclease of the OLD family		CDS	AAA domain protein			
+	918458	919573	1116	Macrolide-specific efflux protein MacA	peg	gi|49175990|ref|NC_000913.2|_918458_919573		RND family efflux transporter, MFP subunit		CDS	macrolide-specific efflux protein macA		macA	
+	919570	921516	1947	Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-)	peg	gi|49175990|ref|NC_000913.2|_919570_921516		ABC-type antimicrobial peptide transport system, ATPase component	3.6.3.-	CDS	macrolide export ATP-binding/permease protein MacB	3.6.3.-	macB	
-	921589	921813	225	Cold shock protein CspD	peg	gi|49175990|ref|NC_000913.2|_921813_921589		cold-shock DNA-binding protein family		CDS	cold shock domain protein CspD		cspD	
+	922136	922456	321	ATP-dependent Clp protease adaptor protein ClpS	peg	gi|49175990|ref|NC_000913.2|_922136_922456		Uncharacterized conserved protein		CDS	ATP-dependent Clp protease adaptor ClpS family protein			
+	922487	924763	2277	ATP-dependent Clp protease ATP-binding subunit ClpA	peg	gi|49175990|ref|NC_000913.2|_922487_924763		ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92)		CDS	ATP-dependent Clp protease ATP-binding subunit ClpA		clpA	
-	925448	925666	219	Translation initiation factor 1	peg	gi|49175990|ref|NC_000913.2|_925666_925448		bacterial translation initiation factor 1 (bIF-1)		CDS	translation initiation factor IF-1		infA	
-	925951	926655	705	Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)	peg	gi|49175990|ref|NC_000913.2|_926655_925951		leucyl/phenylalanyl-tRNA--protein transferase	2.3.2.6	CDS	leucyl/phenylalanyl-tRNA--protein transferase	2.3.2.6	aat	
-	926697	928418	1722	Transport ATP-binding protein CydC	peg	gi|49175990|ref|NC_000913.2|_928418_926697		thiol reductant ABC exporter, CydC subunit		CDS	thiol reductant ABC exporter, CydC subunit		cydC	
-	928419	930185	1767	Transport ATP-binding protein CydD	peg	gi|49175990|ref|NC_000913.2|_930185_928419		thiol reductant ABC exporter, CydD subunit		CDS	thiol reductant ABC exporter, CydD subunit		cydD	
-	930308	931273	966	Thioredoxin reductase (EC 1.8.1.9)	peg	gi|49175990|ref|NC_000913.2|_931273_930308		thioredoxin-disulfide reductase	1.8.1.9	CDS	thioredoxin-disulfide reductase	1.8.1.9	trxB	
+	931818	932312	495	"Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system"	peg	gi|49175990|ref|NC_000913.2|_931818_932312		transcriptional regulator, AsnC family		CDS	leucine-responsive regulatory protein		lrp	
+	932447	936436	3990	Cell division protein FtsK	peg	gi|49175990|ref|NC_000913.2|_932447_936436		DNA translocase FtsK		CDS	DNA translocase ftsK		ftsK	
+	936595	937206	612	Outer membrane lipoprotein carrier protein LolA	peg	gi|49175990|ref|NC_000913.2|_936595_937206		periplasmic chaperone LolA		CDS	outer membrane lipocarrier protein LolA		lolA	
+	937217	938560	1344	FIG065221: Holliday junction DNA helicase	peg	gi|49175990|ref|NC_000913.2|_937217_938560		Recombination protein MgsA		CDS	replication-associated recombination protein A		rarA	
+	938651	939943	1293	Seryl-tRNA synthetase (EC 6.1.1.11)	peg	gi|49175990|ref|NC_000913.2|_938651_939943		seryl-tRNA synthetase (EC 6.1.1.11)	6.1.1.11	CDS	serine--tRNA ligase	6.1.1.11	serS	
+	940182	942626	2445	Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)	peg	gi|49175990|ref|NC_000913.2|_940182_942626		anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.8.5.3	CDS	anaerobic dimethyl sulfoxide reductase chain A	1.8.99.-	dmsA	
+	942637	943254	618	Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.99.-)	peg	gi|49175990|ref|NC_000913.2|_942637_943254		DMSO reductase, iron-sulfur subunit		CDS	dimethylsulfoxide reductase, chain B		dmsB	
+	943256	944119	864	Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)	peg	gi|49175990|ref|NC_000913.2|_943256_944119		DMSO reductase anchor subunit		CDS	DMSO reductase anchor subunit family protein			
-	944154	944780	627	Nicotinamidase family protein YcaC	peg	gi|49175990|ref|NC_000913.2|_944780_944154		Amidases related to nicotinamidase		CDS	conserved hypothetical protein			
+	945094	946242	1149	Hypothetical MFS-type transporter protein YcaD	peg	gi|49175990|ref|NC_000913.2|_945094_946242		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
+	946452	947882	1431	Probable transport protein	peg	gi|49175990|ref|NC_000913.2|_946452_947882		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	inner membrane transporter ycaM		ycaM	
-	947883	948791	909	Putative LysR-like transcriptional regulator	peg	gi|49175990|ref|NC_000913.2|_948791_947883		transcriptional regulator, LysR family		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	948891	949481	591	putative NAD(P)H dehydrogenase	peg	gi|49175990|ref|NC_000913.2|_948891_949481		Putative NADPH-quinone reductase (modulator of drug activity B)		CDS	NADPH-dependent FMN reductase family protein			
-	949563	950303	741	Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	peg	gi|49175990|ref|NC_000913.2|_950303_949563		pyruvate formate-lyase 1-activating enzyme	1.97.1.4	CDS	pyruvate formate-lyase 1-activating enzyme	1.97.1.4	pflA	
-	950495	952777	2283	Pyruvate formate-lyase (EC 2.3.1.54)	peg	gi|49175990|ref|NC_000913.2|_952777_950495		formate acetyltransferase 1	2.3.1.54	CDS	formate acetyltransferase	2.3.1.54	pflB	
-	952832	953689	858	Formate efflux transporter (TC 2.A.44 family)	peg	gi|49175990|ref|NC_000913.2|_953689_952832		formate transporter FocA		CDS	formate transporter FocA		focA	
-	954095	955855	1761	FIG00613574: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_955855_954095		uncharacterized domain		CDS	conserved hypothetical protein			
+	955985	956677	693	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_955985_956677		Predicted membrane protein		CDS	conserved hypothetical protein			
+	956876	957964	1089	Phosphoserine aminotransferase (EC 2.6.1.52)	peg	gi|49175990|ref|NC_000913.2|_956876_957964		phosphoserine aminotransferase apoenzyme (EC 2.6.1.52)	2.6.1.52	CDS	phosphoserine transaminase	2.6.1.52	serC	
+	958035	959318	1284	5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)	peg	gi|49175990|ref|NC_000913.2|_958035_959318		3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	2.5.1.19	CDS	3-phosphoshikimate 1-carboxyvinyltransferase	2.5.1.19	aroA	
+	959487	960251	765	Putative metalloprotease yggG (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_959487_960251		Zn-dependent protease with chaperone function	3.4.24.-	CDS	peptidase M48 family protein			
+	960424	961107	684	Cytidylate kinase (EC 2.7.4.14)	peg	gi|49175990|ref|NC_000913.2|_960424_961107		cytidylate kinase (EC 2.7.4.14)	2.7.4.14	CDS	cytidylate kinase	2.7.4.14	cmk	
+	961218	962891	1674	SSU ribosomal protein S1p	peg	gi|49175990|ref|NC_000913.2|_961218_962891		SSU ribosomal protein S1P		CDS	ribosomal protein S1		rpsA	
+	963051	963335	285	Integration host factor beta subunit	peg	gi|49175990|ref|NC_000913.2|_963051_963335		integration host factor, beta subunit		CDS	integration host factor, beta subunit		ihfB	
+	963543	965807	2265	DNA internalization-related competence protein ComEC/Rec2	peg	gi|49175990|ref|NC_000913.2|_963591_965807		DNA internalization-related competence protein ComEC/Rec2		CDS	DNA internalization-related competence protein ComEC/Rec2			
+	965844	967592	1749	Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25)	peg	gi|49175990|ref|NC_000913.2|_965844_967592		lipid A export permease/ATP-binding protein MsbA	3.6.3.-	CDS	lipid A export permease/ATP-binding protein MsbA		msbA	
+	967589	968575	987	Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130)	peg	gi|49175990|ref|NC_000913.2|_967589_968575		lipid-A-disaccharide kinase (EC 2.7.1.130)	2.7.1.130	CDS	tetraacyldisaccharide 4'-kinase	2.7.1.130	lpxK	
+	968612	969844	1233	FIG004798: Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_968612_969844		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	969896	970078	183	FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster	peg	gi|49175990|ref|NC_000913.2|_969896_970078		Uncharacterized conserved protein		CDS	trm112p-like family protein			
+	970075	970821	747	3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38)	peg	gi|49175990|ref|NC_000913.2|_970075_970821		3-deoxy-D-manno-octulosonate cytidylyltransferase	2.7.7.38	CDS	3-deoxy-D-manno-octulosonate cytidylyltransferase	2.7.7.38	kdsB	
-	971845	972624	780	Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism	peg	gi|49175990|ref|NC_000913.2|_972624_971845		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	970975	971868	894	FIG00637875: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_970975_971868		hypothetical protein		CDS	conserved hypothetical protein			
+	972760	973545	786	S-adenosylmethionine-dependent methyltransferase Functionally Coupled to the MukBEF Chromosome Partitioning Mechanism	peg	gi|49175990|ref|NC_000913.2|_972760_973545		2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase		CDS	protein smtA		smtA	
+	973542	974864	1323	Chromosome partition protein MukF	peg	gi|49175990|ref|NC_000913.2|_973542_974864		bacterial condensin subunit MukF		CDS	chromosome partition protein mukF		mukF	
+	974845	975549	705	Chromosome partition protein MukE	peg	gi|49175990|ref|NC_000913.2|_974872_975549		bacterial condensin subunit MukE		CDS	chromosome partition protein mukE		mukE	
+	975549	980009	4461	Chromosome partition protein MukB	peg	gi|49175990|ref|NC_000913.2|_975549_980009		bacterial condensin subunit MukB		CDS	chromosome partition protein mukB		mukB	
+	980270	982117	1848	"L,D-transpeptidase YcbB"	peg	gi|49175990|ref|NC_000913.2|_980270_982117		Uncharacterized protein conserved in bacteria		CDS	putative L,D-transpeptidase YcbB			
+	982298	982846	549	FIG001587: exported protein	peg	gi|49175990|ref|NC_000913.2|_982298_982846		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	982873	983520	648	"Hypothetical metal-binding enzyme, YcbL homolog"	peg	gi|49175990|ref|NC_000913.2|_982873_983520		Zn-dependent hydrolases, including glyoxylases		CDS	metallo-beta-lactamase superfamily protein			
-	983742	984932	1191	Aspartate aminotransferase (EC 2.6.1.1)	peg	gi|49175990|ref|NC_000913.2|_984932_983742		Aspartate/tyrosine/aromatic aminotransferase	2.6.1.1	CDS	aspartate aminotransferase	2.6.1.1	aspC	
-	985117	986205	1089	Outer membrane protein F precursor	peg	gi|49175990|ref|NC_000913.2|_986205_985117		Outer membrane protein (porin)		CDS	outer membrane protein F		ompF	
-	986808	988208	1401	Asparaginyl-tRNA synthetase (EC 6.1.1.22)	peg	gi|49175990|ref|NC_000913.2|_988208_986808		asparaginyl-tRNA synthetase (EC 6.1.1.22)	6.1.1.22	CDS	asparagine--tRNA ligase	6.1.1.22	asnS	
-	988377	989579	1203	Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	peg	gi|49175990|ref|NC_000913.2|_989579_988377		nicotinate phosphoribosyltransferase	2.4.2.11	CDS	nicotinate phosphoribosyltransferase	2.4.2.11	pncB	
+	989845	992457	2613	Membrane alanine aminopeptidase N (EC 3.4.11.2)	peg	gi|49175990|ref|NC_000913.2|_989845_992457		aminopeptidase N, Escherichia coli type	3.4.11.2	CDS	aminopeptidase N	3.4.11.2	pepN	
-	992500	993267	768	"Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB"	peg	gi|49175990|ref|NC_000913.2|_993267_992500		ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component	3.6.3.-	CDS	aliphatic sulfonates import ATP-binding protein SsuB	3.6.3.-	ssuB	
-	993264	994055	792	Alkanesulfonates transport system permease protein	peg	gi|49175990|ref|NC_000913.2|_994055_993264		ABC-type nitrate/sulfonate/bicarbonate transport system, permease component		CDS	putative aliphatic sulfonates transport permease protein ssuC			
-	994066	995211	1146	Alkanesulfonate monooxygenase (EC 1.14.14.5)	peg	gi|49175990|ref|NC_000913.2|_995211_994066		alkanesulfonate monooxygenase (EC 1.14.14.5)	1.14.14.5	CDS	alkanesulfonate monooxygenase, FMNH(2)-dependent	1.14.14.5	ssuD	
-	995208	996167	960	Alkanesulfonates-binding protein	peg	gi|49175990|ref|NC_000913.2|_996167_995208		ABC transporter, substrate-binding protein, aliphatic sulfonates family		CDS	putative aliphatic sulfonates-binding protein			
-	996160	996735	576	FMN reductase (EC 1.5.1.29)	peg	gi|49175990|ref|NC_000913.2|_996735_996160		FMN reductase, SsuE family		CDS	FMN reductase		ssuE	
+	997091	997630	540	type 1 fimbriae major subunit FimA	peg	gi|49175990|ref|NC_000913.2|_997091_997630		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	997713	998414	702	Putative chaperone	peg	gi|49175990|ref|NC_000913.2|_997740_998414		P pilus assembly protein, chaperone PapD		CDS	chaperone protein focC		focC	
+	998439	1001039	2601	type 1 fimbriae anchoring protein FimD	peg	gi|49175990|ref|NC_000913.2|_998484_1001039		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
+	1001030	1002100	1071	Fimbriae-like adhesin SfmH	peg	gi|49175990|ref|NC_000913.2|_1001030_1002100		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	1002112	1002654	543	type 1 fimbrae adaptor subunit FimF	peg	gi|49175990|ref|NC_000913.2|_1002202_1002654		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	1002614	1003177	564	type 1 fimbrae adaptor subunit FimF	peg	gi|49175990|ref|NC_000913.2|_1002665_1003177		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	1003191	1003880	690	Hypothetical fimbrial chaperone ycbF precursor	peg	gi|49175990|ref|NC_000913.2|_1003200_1003880		P pilus assembly protein, chaperone PapD		CDS	gram-negative pili assembly chaperone, C-terminal domain protein			
+	1003991	1005001	1011	Dihydroorotate dehydrogenase (EC 1.3.3.1)	peg	gi|49175990|ref|NC_000913.2|_1003991_1005001		dihydroorotate oxidase A (EC 1.3.3.1)	1.3.98.1	CDS	dihydroorotate dehydrogenase	1.3.98.1	pyrD	
-	1005714	1006823	1110	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	peg	gi|49175990|ref|NC_000913.2|_1006823_1005714		Uncharacterized Fe-S protein		CDS	conserved hypothetical protein			
+	1005175	1005717	543	FIG01199806: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1005175_1005717		Protein of unknown function (DUF1379).		CDS	conserved hypothetical protein			
+	1007067	1009175	2109	23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_1007067_1009175		23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52)	2.1.1.173	CDS	ribosomal RNA large subunit methyltransferase L	2.1.1.173	rlmL	
+	1009187	1011094	1908	COG0488: ATPase components of ABC transporters with duplicated ATPase domains	peg	gi|49175990|ref|NC_000913.2|_1009187_1011094		ATPase components of ABC transporters with duplicated ATPase domains		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
+	1011224	1012477	1254	Paraquat-inducible protein A	peg	gi|49175990|ref|NC_000913.2|_1011224_1012477		integral membrane protein, PqiA family		CDS	integral membrane , PqiA family protein			
+	1012482	1014122	1641	Paraquat-inducible protein B	peg	gi|49175990|ref|NC_000913.2|_1012482_1014122		Paraquat-inducible protein B		CDS	mce related family protein			
+	1014119	1014682	564	Paraquat-inducible protein B	peg	gi|49175990|ref|NC_000913.2|_1014134_1014682		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1014938	1015105	168				Ribosome modulation factor		CDS				
-	1015175	1015801	627	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	peg	gi|49175990|ref|NC_000913.2|_1015693_1015175		3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	4.2.1.60	CDS	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA	4.2.1.60	fabA	
-	1015762	1017522	1761	ATP-dependent protease La (EC 3.4.21.53) Type II	peg	gi|49175990|ref|NC_000913.2|_1017522_1015762		Predicted ATP-dependent protease	3.4.21.-	CDS	AAA domain protein			
+	1017708	1018160	453	FIG01201035: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1017708_1018160		Uncharacterized protein conserved in bacteria		CDS	organiser of macrodomain of Terminus of chromosome family protein			
-	1018236	1019300	1065	Outer membrane protein A precursor	peg	gi|49175990|ref|NC_000913.2|_1019300_1018236		Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	outer membrane protein A		ompA	
-	1019633	1020142	510	Cell division inhibitor	peg	gi|49175990|ref|NC_000913.2|_1020142_1019633		SOS cell division inhibitor SulA		CDS	cell division inhibitor sulA		sulA	
-	1020953	1023115	2163	Putative efflux (PET) family inner membrane protein YccS	peg	gi|49175990|ref|NC_000913.2|_1023115_1020953		hypothetical membrane protein, TIGR01666		CDS	inner membrane protein yccS		yccS	
+	1020361	1020990	630	DNA transformation protein TfoX	peg	gi|49175990|ref|NC_000913.2|_1020361_1020990		regulator of competence-specific genes		CDS	protein sxy		sxy	
-	1023125	1023571	447	Inner membrane protein YccF	peg	gi|49175990|ref|NC_000913.2|_1023571_1023125		Predicted membrane protein		CDS	inner membrane protein yccF		yccF	
+	1023694	1025748	2055	DNA helicase IV	peg	gi|49175990|ref|NC_000913.2|_1023694_1025748		Superfamily I DNA and RNA helicases	3.6.4.12	CDS	helicase IV	3.6.4.12	helD	
-	1025780	1026238	459	Methylglyoxal synthase (EC 4.2.3.3)	peg	gi|49175990|ref|NC_000913.2|_1026238_1025780		methylglyoxal synthase	4.2.3.3	CDS	methylglyoxal synthase	4.2.3.3	mgsA	
-	1026334	1026996	663	UPF0319 protein YccT precursor	peg	gi|49175990|ref|NC_000913.2|_1026996_1026334		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1027036	1027194	159	FIG00638691: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1027194_1027036					putative predicted protein			
+	1027169	1027582	414	"Succinyl-CoA synthetase, alpha subunit-related enzymes"	peg	gi|49175990|ref|NC_000913.2|_1027169_1027582		Predicted CoA-binding protein		CDS	conserved hypothetical protein			
-	1027627	1027944	318	hemimethylated DNA binding protein YccV	peg	gi|49175990|ref|NC_000913.2|_1027944_1027627		hemimethylated DNA binding domain		CDS	hemimethylated DNA binding domain protein			
-	1028002	1029192	1191	LSU m5C1962 methyltransferase RlmI	peg	gi|49175990|ref|NC_000913.2|_1029192_1028002		23S rRNA m(5)C-1962 methyltransferase (EC 2.1.1.191)	2.1.1.191	CDS	ribosomal RNA large subunit methyltransferase I	2.1.1.191	rlmI	
-	1029562	1029891	330	tRNA 2-thiouridine synthesizing protein E (EC 2.8.1.-)	peg	gi|49175990|ref|NC_000913.2|_1029891_1029562		sulfur relay protein, TusE/DsrC/DsvC family	2.8.1.-	CDS	sulfur relay , TusE/DsrC/DsvC family protein		tusE	
+	1029287	1029565	279	"Acylphosphate phosphohydrolase (EC 3.6.1.7), putative"	peg	gi|49175990|ref|NC_000913.2|_1029287_1029565		Acylphosphatases	3.6.1.7	CDS	acylphosphatase	3.6.1.7	yccX	
-	1029982	1030641	660	Putative TEGT family carrier/transport protein	peg	gi|49175990|ref|NC_000913.2|_1030584_1029982		Integral membrane protein, interacts with FtsH		CDS	modulator of FtsH protease YccA		yccA	
+	1031362	1032480	1119	Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	peg	gi|49175990|ref|NC_000913.2|_1031362_1032480		[NiFe]-hydrogenase I apoprotein, small subunit	1.12.99.6	CDS	hydrogenase-1 small chain	1.12.99.6	hyaA	
+	1032477	1034270	1794	Uptake hydrogenase large subunit (EC 1.12.99.6)	peg	gi|49175990|ref|NC_000913.2|_1032477_1034270		[NiFe]-hydrogenase I apoprotein, large subunit	1.12.99.6	CDS	hydrogenase-1 large chain	1.12.99.6	hyaB	
+	1034289	1034996	708	"Ni,Fe-hydrogenase I cytochrome b subunit"	peg	gi|49175990|ref|NC_000913.2|_1034289_1034996		[NiFe]-hydrogenase I apocytochrome b subunit		CDS	ni/Fe-hydrogenase, b-type cytochrome subunit		cybH	
+	1034993	1035580	588	Hydrogenase maturation protease (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_1034993_1035580		Hydrogenase 1 maturation peptidase HyaD. Aspartic peptidase. MEROPS family A31	3.4.24.-	CDS	hydrogenase expression/formation protein	3.4.23.-	hybD	
+	1035577	1035975	399	Hydrogenase maturation factor HoxO/HyaE	peg	gi|49175990|ref|NC_000913.2|_1035577_1035975		Tat proofreading chaperone HyaE		CDS	hydrogenase-1 operon protein hyaE		hyaE	
+	1035972	1036829	858	Hydrogenase maturation factor HoxQ	peg	gi|49175990|ref|NC_000913.2|_1035972_1036829		HupH hydrogenase expression protein, C-terminal conserved region.		CDS	hupH hydrogenase expression , C-terminal conserved region family protein			
+	1036963	1038507	1545	Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_1036963_1038507		cytochrome bd-II ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.11)	1.10.3.-	CDS	cytochrome bd-II oxidase subunit 1	1.10.3.-	appC	
+	1038519	1039655	1137	Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	peg	gi|49175990|ref|NC_000913.2|_1038519_1039655		cytochrome bd-II ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.11)	1.10.3.-	CDS	cytochrome d ubiquinol oxidase, subunit II	1.10.3.-	cydB	
+	1039840	1041138	1299	Phosphoanhydride phosphohydrolase (EC 3.1.3.2) (pH 2.5 acid phosphatase) (AP) / 4- phytase (EC 3.1.3.26)	peg	gi|49175990|ref|NC_000913.2|_1039840_1041138		Histidine phosphatase superfamily (branch 2).	3.1.3.26, 3.1.3.2	CDS	periplasmic AppA protein	3.1.3.26	appA	
-	1041253	1043433	2181	Tyrosine-protein kinase Wzc (EC 2.7.10.2)	peg	gi|49175990|ref|NC_000913.2|_1043418_1041253		capsular exopolysaccharide family		CDS	tyrosine-protein kinase etk	2.7.10.-	etk	
-	1043453	1043899	447	Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48)	peg	gi|49175990|ref|NC_000913.2|_1043899_1043453		Protein-tyrosine-phosphatase	3.1.3.48	CDS	low molecular weight protein-tyrosine-phosphatase etp	3.1.3.48	etp	
-	1043887	1045026	1140	Putative polysaccharide export protein YccZ precursor	peg	gi|49175990|ref|NC_000913.2|_1045026_1043887		Periplasmic protein involved in polysaccharide export		CDS	putative outer membrane lipoprotein Wza			
-	1045072	1047168	2097	Putative outer membrane lipoprotein YmcA	peg	gi|49175990|ref|NC_000913.2|_1047168_1045072		Bacterial putative lipoprotein (DUF940).		CDS	conserved hypothetical protein			
-	1047168	1047914	747	YjbG polysaccharide synthesis-related protein	peg	gi|49175990|ref|NC_000913.2|_1047914_1047168		Capsule biosynthesis GfcC.		CDS	putative protein			
-	1047911	1048555	645	Uncharacterized lipoprotein YmcC precursor	peg	gi|49175990|ref|NC_000913.2|_1048555_1047911		Protein of unknown function (DUF2886).		CDS	conserved hypothetical protein			
-	1048662	1048967	306	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1048967_1048662		hypothetical protein		CDS	hypothetical protein			
+	1049056	1049331	276				Transposase and inactivated derivatives		CDS				
+	1049250	1049753	504	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1049250_1049753		Transposase and inactivated derivatives, IS1 family		CDS	putative transposase			
-	1050186	1050398	213	Cold shock protein CspH	peg	gi|49175990|ref|NC_000913.2|_1050398_1050186					RNA chaperone, negative regulator of cspA transcription		cspE	
+	1050684	1050896	213	Cold shock protein CspG	peg	gi|49175990|ref|NC_000913.2|_1050684_1050896		cold-shock DNA-binding protein family		CDS	cold shock-like protein CspG		cspG	
+	1050528	1050957	430										
+	1051290	1051463	174	GnsA protein	peg	gi|49175990|ref|NC_000913.2|_1051290_1051463		GnsA/GnsB family.		CDS	gnsA/GnsB family protein			
-	1051512	1052585	1074	Hypothetical iron-sulfur cluster binding protein YccM	peg	gi|49175990|ref|NC_000913.2|_1052585_1051512		Polyferredoxin		CDS	putative electron transport protein yccM			
-	1052657	1055371	2715	Sensor protein torS (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_1055371_1052657		histidine kinase TorS	2.7.13.3	CDS	TMAO reductase sytem sensor TorS	2.7.13.3	torS	
-	1056485	1057177	693	TorCAD operon transcriptional regulatory protein TorR	peg	gi|49175990|ref|NC_000913.2|_1057177_1056485		response regulator TorR		CDS	torCAD operon transcriptional regulatory protein torR		torR	
+	1055484	1056512	1029	Periplasmic protein torT precursor	peg	gi|49175990|ref|NC_000913.2|_1055484_1056512		TMAO-binding protein		CDS	TMAO reductase system periplasmic protein TorT		torT	
+	1057307	1058479	1173	Cytochrome c-type protein TorC	peg	gi|49175990|ref|NC_000913.2|_1057307_1058479		trimethylamine-N-oxide reductase c-type cytochrome TorC		CDS	trimethylamine-N-oxide reductase c-type cytochrome TorC		torC	
+	1058479	1061025	2547	Trimethylamine-N-oxide reductase (EC 1.6.6.9)	peg	gi|49175990|ref|NC_000913.2|_1058479_1061025		trimethylamine-N-oxide reductase TorA	1.7.2.3	CDS	trimethylamine-N-oxide reductase TorA	1.7.2.3	torA	
+	1061022	1061621	600	Chaperone protein TorD	peg	gi|49175990|ref|NC_000913.2|_1061022_1061621		Tat proofreading chaperone TorD		CDS	chaperone protein torD		torD	
-	1061773	1062078	306	Chaperone-modulator protein CbpM	peg	gi|49175990|ref|NC_000913.2|_1062078_1061773		MerR HTH family regulatory protein.		CDS	chaperone modulatory protein CbpM		cbpM	
-	1062078	1062998	921	DnaJ-class molecular chaperone CbpA	peg	gi|49175990|ref|NC_000913.2|_1062998_1062078		DnaJ-class molecular chaperone with C-terminal Zn finger domain		CDS	curved DNA-binding protein		cbpA	
+	1063259	1064515	1257	FIG00638642: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1063259_1064515		hypothetical protein		CDS	conserved hypothetical protein			
+	1064808	1066049	1242	Glucose-1-phosphatase (EC 3.1.3.10)	peg	gi|49175990|ref|NC_000913.2|_1064808_1066049		Histidine phosphatase superfamily (branch 2).	3.1.3.10	CDS	glucose-1-phosphatase	3.1.3.10	agp	
-	1066087	1066314	228	FIG00895798: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1066314_1066087		YccJ-like protein.		CDS	yccJ-like family protein			
-	1066335	1066931	597	Flavoprotein wrbA	peg	gi|49175990|ref|NC_000913.2|_1066931_1066335		NAD(P)H:quinone oxidoreductase, type IV		CDS	quinone oxidoreductase, type IV	1.6.5.2	wrbA	
+	1067304	1067477	174				Stress-induced bacterial acidophilic repeat motif.		CDS				
-	1067540	1067707	168	conserved hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1067707_1067540								
-	1067734	1069062	1329	Uracil permease	peg	gi|49175990|ref|NC_000913.2|_1069062_1067734		pyrimidine utilization transport protein G		CDS	pyrimidine utilization transport protein G		rutG	
-	1069083	1069577	495	Predicted flavin reductase RutF in novel pyrimidine catabolism pathway	peg	gi|49175990|ref|NC_000913.2|_1069577_1069083		pyrimidine utilization flavin reductase protein F	1.5.1.-	CDS	pyrimidine utilization flavin reductase protein F		rutF	
-	1069588	1070178	591	Predicted reductase RutE in novel pyrimidine catabolism pathway	peg	gi|49175990|ref|NC_000913.2|_1070178_1069588		Nitroreductase	1.1.1.-	CDS	putative malonic semialdehyde reductase RutE			
-	1070188	1070988	801	Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway	peg	gi|49175990|ref|NC_000913.2|_1070988_1070188		pyrimidine utilization protein D	3.5.1.-	CDS	pyrimidine utilization protein D		rutD	
-	1070996	1071382	387	Possible ring-opening amidohydrolase RutC in novel pyrimidine catabolism pathway	peg	gi|49175990|ref|NC_000913.2|_1071382_1070996		pyrimidine utilization protein C		CDS	pyrimidine utilization protein C		rutC	
-	1071394	1072089	696	Predicted amidohydrolase RutB in novel pyrimidine catabolism pathway	peg	gi|49175990|ref|NC_000913.2|_1072089_1071394		pyrimidine utilization protein B		CDS	pyrimidine utilization protein B		rutB	
-	1072086	1073177	1092	Predicted monooxygenase RutA in novel pyrimidine catabolism pathway	peg	gi|49175990|ref|NC_000913.2|_1073177_1072086		pyrimidine utilization protein A		CDS	pyrimidine utilization protein A		rutA	
+	1073465	1074103	639	Transcriptional regulator RutR of pyrimidine catabolism (TetR family)	peg	gi|49175990|ref|NC_000913.2|_1073465_1074103		transcriptional regulator, TetR family		CDS	pyrimidine utilization regulatory protein R		rutR	
-	1074143	1078105	3963	Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	peg	gi|49175990|ref|NC_000913.2|_1078105_1074143		L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	1.5.1.12, 1.5.99.8	CDS	bifunctional protein putA	1.5.1.12	putA	
+	1078217	1078369	153	FIG00639374: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1078217_1078369					putative predicted protein			
+	1078528	1080036	1509	Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter	peg	gi|49175990|ref|NC_000913.2|_1078546_1080036		sodium/proline symporter		CDS	sodium/proline symporter		putP	
+	1080689	1081408	720	Ferrous iron transport permease EfeU	peg	gi|49175990|ref|NC_000913.2|_1080689_1081408		High-affinity Fe2+/Pb2+ permease		CDS	ferrous iron permease efeU		efeU	
+	1081466	1082593	1128	"Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain"	peg	gi|49175990|ref|NC_000913.2|_1081466_1082593		Predicted periplasmic lipoprotein involved in iron transport		CDS	conserved hypothetical protein			
+	1082599	1083870	1272	Ferrous iron transport peroxidase EfeB	peg	gi|49175990|ref|NC_000913.2|_1082599_1083870		Tat-translocated enzyme	1.11.1.19	CDS	peroxidase ycdB	1.11.1.-	ycdB	
+	1084215	1085279	1065	"Phosphate starvation-inducible protein PhoH, predicted ATPase"	peg	gi|49175990|ref|NC_000913.2|_1084215_1085279		Phosphate starvation-inducible protein PhoH, predicted ATPase		CDS	protein phoH		phoH	
-	1085329	1085742	414	Biofilm PGA synthesis auxiliary protein PgaD	peg	gi|49175990|ref|NC_000913.2|_1085631_1085329		poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD		CDS	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD		pgaD	
-	1085744	1087069	1326	Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-)	peg	gi|49175990|ref|NC_000913.2|_1086982_1085744		poly-beta-1,6 N-acetyl-D-glucosamine synthase	2.4.-	CDS	poly-beta-1,6 N-acetyl-D-glucosamine synthase	2.4.1.-	pgaC	
-	1087062	1089080	2019	Biofilm PGA synthesis deacetylase PgaB (EC 3.-)	peg	gi|49175990|ref|NC_000913.2|_1089080_1087062		poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	3.-	CDS	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	3.5.1.-	pgaB	
-	1089089	1091512	2424	Biofilm PGA outer membrane secretin PgaA	peg	gi|49175990|ref|NC_000913.2|_1091512_1089089		poly acetylglucosamine porin (TC 1.B.55)		CDS	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA		pgaA	
+	1092027	1093457	1431	Sensory box/GGDEF domain protein	peg	gi|49175990|ref|NC_000913.2|_1092027_1093457		diguanylate cyclase (GGDEF) domain		CDS	putative diguanylate cyclase YcdT			
-	1093498	1094364	867	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1094364_1093498		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	1094361	1094660	300	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1094660_1094361		Transposase.		CDS	transposase family protein			
+	1094746	1095069	324	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1094746_1095069		hypothetical protein		CDS	putative (Acyl-carrier-protein) S-malonyltransferase			
+	1095066	1096052	987	Uncharacterized protein YcdU	peg	gi|49175990|ref|NC_000913.2|_1095066_1096052		hypothetical protein		CDS	photosystem II complex subunit Ycf12 family protein			
+	1097109	1098047	939	Putative 2-hydroxyacid dehydrogenase YcdW (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_1097109_1098047		Phosphoglycerate dehydrogenase and related dehydrogenases	1.1.1.81, 1.1.1.79	CDS	NAD binding domain of 6-phosphogluconate dehydrogenase family protein			
+	1098102	1098839	738	Putative hydrolase YcdX (EC 3.1.-.-)	peg	gi|49175990|ref|NC_000913.2|_1098102_1098839		Histidinol phosphatase and related hydrolases of the PHP family		CDS	putative hydrolase ycdX			
+	1098863	1099417	555	"Uncharacterized protein YcdY, TorD family"	peg	gi|49175990|ref|NC_000913.2|_1098863_1099417		Uncharacterized component of anaerobic dehydrogenases		CDS	nitrate reductase delta subunit			
+	1099489	1100010	522	Inner membrane protein YcdZ	peg	gi|49175990|ref|NC_000913.2|_1099489_1100010		Protein of unknown function (DUF1097).		CDS	inner membrane protein ycdZ		ycdZ	
-	1100074	1100907	834	Curli production assembly/transport component CsgG	peg	gi|49175990|ref|NC_000913.2|_1100907_1100074		Uncharacterized protein involved in formation of curli polymers		CDS	curli production assembly/transport component CsgG family protein			
-	1100934	1101350	417	Curli production assembly/transport component CsgF	peg	gi|49175990|ref|NC_000913.2|_1101320_1100934		Type VIII secretion system (T8SS), CsgF protein.		CDS	type VIII secretion system (T8SS), CsgF family protein			
-	1101375	1101764	390	Curli production assembly/transport component CsgE	peg	gi|49175990|ref|NC_000913.2|_1101764_1101375		Curli assembly protein CsgE.		CDS	curli assembly CsgE family protein			
-	1101769	1102419	651	Transcriptional regulator CsgD for 2nd curli operon	peg	gi|49175990|ref|NC_000913.2|_1102341_1101769		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	csgBAC operon transcriptional regulatory protein		csgD	
-	1102886	1103071	186	FIG00637955: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1103071_1102886					putative conserved predicted protein			
+	1103147	1103629	483	"Minor curlin subunit CsgB, nucleation component of curlin monomers"	peg	gi|49175990|ref|NC_000913.2|_1103147_1103629		Curlin associated repeat.		CDS	minor curlin subunit		csgB	
+	1103670	1104125	456	Major curlin subunit precursor CsgA	peg	gi|49175990|ref|NC_000913.2|_1103670_1104125		Curlin associated repeat.		CDS	major curlin subunit		csgA	
+	1104184	1104516	333	Putative curli production protein CsgC	peg	gi|49175990|ref|NC_000913.2|_1104184_1104516		Thin aggregative fimbriae synthesis protein.		CDS	curli assembly protein CsgC		csgC	
+	1104637	1104948	312	FIG00638598: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1104664_1104948		hypothetical protein		CDS	conserved hypothetical protein			
+	1105043	1105576	534	"COG2110, Macro domain, possibly ADP-ribose binding module"	peg	gi|49175990|ref|NC_000913.2|_1105043_1105576		Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1		CDS	regulator of RNase III activity		ymdB	
+	1105518	1106999	1482	Cardiolipin synthetase (EC 2.7.8.-)	peg	gi|49175990|ref|NC_000913.2|_1105578_1106999		Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes		CDS	phospholipase D family protein			
-	1107007	1108164	1158	Glucans biosynthesis protein C (EC 2.1.-.-)	peg	gi|49175990|ref|NC_000913.2|_1108164_1107007		Predicted acyltransferases	2.1.-	CDS	acyltransferase family protein			
+	1108540	1110093	1554	Glucans biosynthesis protein G precursor	peg	gi|49175990|ref|NC_000913.2|_1108540_1110093		Periplasmic glucans biosynthesis protein		CDS	glucans biosynthesis protein G		mdoG	
+	1110116	1112629	2514	Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)	peg	gi|49175990|ref|NC_000913.2|_1110116_1112629		Membrane glycosyltransferase	2.4.1.-	CDS	glucans biosynthesis glucosyltransferase H	2.4.1.-	mdoH	
+	1112802	1113029	228	Putative outer membrane lipoprotein	peg	gi|49175990|ref|NC_000913.2|_1112802_1113029		Predicted periplasmic lipoprotein		CDS	conserved hypothetical protein			
-	1113030	1113404	375	Acidic protein msyB	peg	gi|49175990|ref|NC_000913.2|_1113404_1113030		MsyB protein.		CDS	msyB family protein			
-	1113487	1114713	1227	"Multidrug-efflux transporter, major facilitator superfamily (MFS) (TC 2.A.1)"	peg	gi|49175990|ref|NC_000913.2|_1114713_1113487		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
-	1114885	1115805	921	Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_1115805_1114885		lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	2.3.1.-	CDS	lipid A biosynthesis lauroyl acyltransferase	2.3.1.-	htrB	
+	1116030	1117082	1053	Rhodanese-related sulfurtransferases	peg	gi|49175990|ref|NC_000913.2|_1116030_1117082		Predicted sulfurtransferase		CDS	rhodanese-like domain protein			
-	1117124	1117699	576	Protein yceI precursor	peg	gi|49175990|ref|NC_000913.2|_1117699_1117124		Uncharacterized conserved protein		CDS	yceI-like domain protein			
-	1117703	1118269	567	Cytochrome B561	peg	gi|49175990|ref|NC_000913.2|_1118269_1117703		Cytochrome B561		CDS	conserved hypothetical protein			
-	1118691	1119809	1119	N-methyl-L-amino-acid oxidase (EC 1.5.3.2); N-methyl-L-tryptophan oxidase (EC 1.5.3.-)	peg	gi|49175990|ref|NC_000913.2|_1119809_1118691		Glycine/D-amino acid oxidases (deaminating)	1.5.3.-	CDS	N-methyl-L-tryptophan oxidase	1.5.3.-	solA	
-	1119924	1120181	258	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_1120181_1119924		BssS protein family.		CDS	bssS family protein			
-	1120465	1120710	246	DNA-damage-inducible protein I	peg	gi|49175990|ref|NC_000913.2|_1120710_1120465		DinI-like family.		CDS	DNA-damage-inducible protein I		dinI	
-	1120784	1121830	1047	Dihydroorotase (EC 3.5.2.3)	peg	gi|49175990|ref|NC_000913.2|_1121704_1120784		dihydroorotase (EC 3.5.2.3)	3.5.2.3	CDS	dihydroorotase, homodimeric type	3.5.2.3	pyrC	
-	1121936	1122496	561	Putative lipoprotein yceB precursor	peg	gi|49175990|ref|NC_000913.2|_1122496_1121936		Protein of unknown function (DUF1439).		CDS	conserved hypothetical protein			
-	1122630	1123277	648	Glutaredoxin 2	peg	gi|49175990|ref|NC_000913.2|_1123277_1122630		Glutaredoxin, GrxB family		CDS	glutaredoxin, GrxB family		grxB	
-	1123341	1124549	1209	MFS superfamily export protein YceL	peg	gi|49175990|ref|NC_000913.2|_1124549_1123341		Arabinose efflux permease		CDS	major Facilitator Superfamily protein			
+	1124785	1125369	585	Ribosomal-protein-S5p-alanine acetyltransferase	peg	gi|49175990|ref|NC_000913.2|_1124785_1125369		[SSU ribosomal protein S5P]-alanine acetyltransferase (EC 2.3.1.128)	2.3.1.128	CDS	ribosomal-protein-alanine acetyltransferase	2.3.1.128	rimJ	
+	1125380	1126027	648	Protein of unknown function YceH	peg	gi|49175990|ref|NC_000913.2|_1125380_1126027		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1126029	1126952	924	Virulence factor MviM	peg	gi|49175990|ref|NC_000913.2|_1126029_1126952		Predicted dehydrogenases and related proteins		CDS	conserved hypothetical protein			
+	1127062	1128597	1536	Proposed peptidoglycan lipid II flippase MurJ	peg	gi|49175990|ref|NC_000913.2|_1127062_1128597		integral membrane protein MviN		CDS	integral membrane protein MviN		mviN	
-	1128637	1129053	417	Flagellar biosynthesis protein FlgN	peg	gi|49175990|ref|NC_000913.2|_1129053_1128637		Flagellar biosynthesis/type III secretory pathway chaperone		CDS	flgN family protein			
-	1129058	1129351	294	Negative regulator of flagellin synthesis FlgM	peg	gi|49175990|ref|NC_000913.2|_1129351_1129058		anti-sigma-28 factor, FlgM family		CDS	flagellar biosynthesis anti-sigma factor FlgM		flgM	
-	1129427	1130086	660	Flagellar basal-body P-ring formation protein FlgA	peg	gi|49175990|ref|NC_000913.2|_1130086_1129427		flagella basal body P-ring formation protein FlgA		CDS	flagella basal body P-ring formation protein FlgA		flgA	
+	1130241	1130657	417	Flagellar basal-body rod protein FlgB	peg	gi|49175990|ref|NC_000913.2|_1130241_1130657		flagellar basal-body rod protein FlgB		CDS	flagellar basal-body rod protein FlgB		flgB	
+	1130661	1131065	405	Flagellar basal-body rod protein FlgC	peg	gi|49175990|ref|NC_000913.2|_1130661_1131065		flagellar basal-body rod protein FlgC		CDS	flagellar basal-body rod protein FlgC		flgC	
+	1131077	1131772	696	Flagellar basal-body rod modification protein FlgD	peg	gi|49175990|ref|NC_000913.2|_1131077_1131772		Flagellar hook capping protein		CDS	basal-body rod modification protein flgD		flgD	
+	1131797	1133005	1209	Flagellar hook protein FlgE	peg	gi|49175990|ref|NC_000913.2|_1131797_1133005		fagellar hook-basal body proteins		CDS	flagellar hook protein flgE		flgE	
+	1133025	1133780	756	Flagellar basal-body rod protein FlgF	peg	gi|49175990|ref|NC_000913.2|_1133025_1133780		fagellar hook-basal body proteins		CDS	flagellar basal-body rod protein flgF		flgF	
+	1133952	1134734	783	Flagellar basal-body rod protein FlgG	peg	gi|49175990|ref|NC_000913.2|_1133952_1134734		flagellar basal-body rod protein FlgG, Gram-negative bacteria		CDS	flagellar basal-body rod protein FlgG		flgG	
+	1134787	1135485	699	Flagellar L-ring protein FlgH	peg	gi|49175990|ref|NC_000913.2|_1134787_1135485		Flagellar basal body L-ring protein		CDS	flagellar L-ring family protein			
+	1135497	1136594	1098	Flagellar P-ring protein FlgI	peg	gi|49175990|ref|NC_000913.2|_1135497_1136594		Flagellar basal-body P-ring protein		CDS	flagellar P-ring family protein			
+	1136594	1137535	942	Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_1136594_1137535		flagellar rod assembly protein/muramidase FlgJ		CDS	flagellar rod assembly protein/muramidase FlgJ		flgJ	
+	1137601	1139244	1644	Flagellar hook-associated protein FlgK	peg	gi|49175990|ref|NC_000913.2|_1137601_1139244		flagellar hook-associated protein FlgK		CDS	flagellar hook-associated protein FlgK		flgK	
+	1139256	1140209	954	Flagellar hook-associated protein FlgL	peg	gi|49175990|ref|NC_000913.2|_1139256_1140209		flagellar hook-associated protein 3		CDS	flagellar hook-associated protein 3		flgL	
-	1140405	1143590	3186	Ribonuclease E (EC 3.1.26.12)	peg	gi|49175990|ref|NC_000913.2|_1143590_1140405		RNAse E (EC 3.1.26.12)	3.1.26.12	CDS	ribonuclease E	3.1.26.12	rne	
-	1143615	1143951	337										
+	1144163	1145122	960	Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_1144163_1145122		ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24)	5.4.99.24	CDS	pseudouridine synthase, RluA family protein	5.4.99.-		
-	1145234	1145857	624	FIG146278: Maf/YceF/YhdE family protein	peg	gi|49175990|ref|NC_000913.2|_1145857_1145234		MAF protein		CDS	septum formation protein Maf		maf	
+	1145812	1145980	169										
+	1146017	1146538	522	"COG1399 protein, clustered with ribosomal protein L32p"	peg	gi|49175990|ref|NC_000913.2|_1146017_1146538		Predicted metal-binding, possibly nucleic acid-binding protein		CDS	conserved hypothetical protein			
+	1146590	1146763	174	LSU ribosomal protein L32p	peg	gi|49175990|ref|NC_000913.2|_1146590_1146763		LSU ribosomal protein L32P		CDS	ribosomal protein L32		rpmF	
+	1146874	1147914	1041	Phosphate:acyl-ACP acyltransferase PlsX	peg	gi|49175990|ref|NC_000913.2|_1146874_1147914		phosphate:acyl-[acyl carrier protein] acyltransferase	2.3.1.15	CDS	fatty acid/phospholipid synthesis protein PlsX		plsX	
+	1147982	1148935	954	"3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)"	peg	gi|49175990|ref|NC_000913.2|_1147982_1148935		3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41)	2.3.1.180	CDS	3-oxoacyl-[acyl-carrier-protein] synthase 3	2.3.1.180	fabH	
+	1148951	1149880	930	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	peg	gi|49175990|ref|NC_000913.2|_1148951_1149880		[Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39)	2.3.1.39	CDS	malonyl CoA-acyl carrier protein transacylase	2.3.1.39	fabD	
+	1149893	1150627	735	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|49175990|ref|NC_000913.2|_1149893_1150627		3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)	1.1.1.100	CDS	3-oxoacyl-[acyl-carrier-protein] reductase	1.1.1.100	fabG	
+	1150838	1151074	237	Acyl carrier protein	peg	gi|49175990|ref|NC_000913.2|_1150838_1151074		acyl carrier protein		CDS	acyl carrier protein		acpP	
+	1151162	1152403	1242	"3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)"	peg	gi|49175990|ref|NC_000913.2|_1151162_1152403		3-oxoacyl-[acyl-carrier-protein] synthase II (EC 2.3.1.41)	2.3.1.179	CDS	beta-ketoacyl-acyl-carrier-protein synthase II	2.3.1.179	fabF	
+	1152523	1153332	810	Aminodeoxychorismate lyase (EC 4.1.3.38)	peg	gi|49175990|ref|NC_000913.2|_1152523_1153332		aminodeoxychorismate lyase apoprotein  (EC 4.1.3.38)	4.1.3.38	CDS	aminodeoxychorismate lyase	4.1.3.38	pabC	
+	1153335	1154357	1023	FIG004453: protein YceG like	peg	gi|49175990|ref|NC_000913.2|_1153335_1154357		conserved hypothetical protein, YceG family		CDS	yceG-like family protein			
+	1154347	1154988	642	Thymidylate kinase (EC 2.7.4.9)	peg	gi|49175990|ref|NC_000913.2|_1154347_1154988		thymidylate kinase (EC 2.7.4.9)	2.7.4.9	CDS	thymidylate kinase	2.7.4.9	tmk	
+	1154985	1155989	1005	DNA polymerase III delta prime subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_1154985_1155989		DNA polymerase III, delta prime subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III subunit delta'	2.7.7.7	holB	
+	1156000	1156797	798	Putative deoxyribonuclease YcfH	peg	gi|49175990|ref|NC_000913.2|_1156000_1156797		hydrolase, TatD family	3.1.21.-	CDS	conserved hypothetical protein			
+	1157092	1158525	1434	"PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_1157092_1158525		PTS system D-glucose-specific IIB component, Glc family (TC 4.A.1.1.1)/PTS system D-glucose-specific IIC component, Glc family (TC 4.A.1.1.1)		CDS	PTS system glucose-specific EIICB component	2.7.1.69	ptsG	
-	1158585	1160774	2190	Putative OMR family iron-siderophore receptor precursor	peg	gi|49175990|ref|NC_000913.2|_1160774_1158585		TonB-dependent siderophore receptor		CDS	fhuE receptor		fhuE	
-	1160807	1160977	171	FIG00639251: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1160977_1160807					conserved hypothetical protein			
+	1161108	1161467	360	YcfF/hinT protein: a purine nucleoside phosphoramidase	peg	gi|49175990|ref|NC_000913.2|_1161108_1161467		Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	HIT domain protein			
+	1161470	1161847	378	YcfL protein: an outer membrane lipoprotein that is part of a salvage cluster	peg	gi|49175990|ref|NC_000913.2|_1161494_1161847		Predicted periplasmic lipoprotein		CDS	conserved hypothetical protein			
+	1161861	1162502	642	"Lipoprotein YcfM, part of a salvage pathway of unknown substrate"	peg	gi|49175990|ref|NC_000913.2|_1161861_1162502		uncharacterized proteobacterial lipoprotein		CDS	conserved hypothetical protein			
+	1162483	1163307	825	Thiamine kinase (EC 2.7.1.89) @ Adenosylcobinamide kinase (EC 2.7.1.156)	peg	gi|49175990|ref|NC_000913.2|_1162483_1163307		thiamine kinase	2.7.1.89	CDS	thiamine kinase	2.7.1.89	thiK	
+	1163318	1164343	1026	Beta N-acetyl-glucosaminidase (EC 3.2.1.52)	peg	gi|49175990|ref|NC_000913.2|_1163318_1164343		beta-N-acetylhexosaminidase (EC:3.2.1.52)	3.2.1.52	CDS	glycosyl hydrolase family 3 N terminal domain protein			
+	1164366	1164908	543	YcfP protein: probably an esterase that is part of a salvage cluster	peg	gi|49175990|ref|NC_000913.2|_1164366_1164908		Predicted esterase		CDS	conserved hypothetical protein			
+	1165308	1166612	1305	NADH dehydrogenase (EC 1.6.99.3)	peg	gi|49175990|ref|NC_000913.2|_1165308_1166612		NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	NADH dehydrogenase	1.6.99.3	ndh	
+	1166822	1167361	540	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_1166822_1167361		Predicted outer membrane lipoprotein		CDS	glycine-zipper containing OmpA-like membrane domain protein			
-	1167423	1168118	696	"Transcriptional regulator, TetR family"	peg	gi|49175990|ref|NC_000913.2|_1168055_1167423		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	1168296	1168553	258	Putative outer membrane protein	peg	gi|49175990|ref|NC_000913.2|_1168296_1168553		Protein of unknown function (DUF1471).		CDS	multiple stress resistance protein BhsA		bhsA	
-	1168635	1169594	960	"L,D-transpeptidase YcfS"	peg	gi|49175990|ref|NC_000913.2|_1169594_1168635		Uncharacterized protein conserved in bacteria		CDS	putative L,D-transpeptidase YcfS			
-	1169741	1173235	3495	Transcription-repair coupling factor	peg	gi|49175990|ref|NC_000913.2|_1173187_1169741		transcription-repair coupling factor (mfd)	3.6.4.-	CDS	transcription-repair coupling factor	3.6.1.-	mfd	
-	1173315	1174388	1074	FIG00638640: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1174388_1173315		Predicted membrane protein		CDS	inner membrane protein YcfT		ycfT	
+	1174650	1175849	1200	Lipoprotein releasing system transmembrane protein LolC	peg	gi|49175990|ref|NC_000913.2|_1174650_1175849		lipoprotein releasing system, transmembrane protein, LolC/E family		CDS	lipo-releasing system transmembrane protein lolC		lolC	
+	1175842	1176543	702	Lipoprotein releasing system ATP-binding protein LolD	peg	gi|49175990|ref|NC_000913.2|_1175842_1176543		lipoprotein releasing system, ATP-binding protein	3.6.3.-	CDS	liporeleasing system, ATP-binding protein	3.6.3.-	lolD	
+	1176549	1177787	1239	Lipoprotein releasing system transmembrane protein LolE	peg	gi|49175990|ref|NC_000913.2|_1176549_1177787		lipoprotein releasing system, transmembrane protein LolE		CDS	liporeleasing system, transmembrane protein LolE		lolE	
+	1177816	1178727	912	Latent glucokinase ycfX	peg	gi|49175990|ref|NC_000913.2|_1177816_1178727		N-acetylglucosamine kinase (EC 2.7.1.59)	2.7.1.59	CDS	glucokinase family protein			
+	1178743	1179582	840	NAD-dependent protein deacetylase of SIR2 family	peg	gi|49175990|ref|NC_000913.2|_1178743_1179582		NAD-dependent protein deacetylases, SIR2 family	3.5.1.-	CDS	sir2 family protein			
-	1179702	1180490	789	putative factor	peg	gi|49175990|ref|NC_000913.2|_1180490_1179702		Beta-propeller domains of methanol dehydrogenase type		CDS	inner membrane protein ycfZ		ycfZ	
-	1180487	1180948	462	FIG00639097: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1180948_1180487		Protein of unknown function (DUF3592).		CDS	inner membrane protein ymfA		ymfA	
-	1181006	1182052	1047	"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)"	peg	gi|49175990|ref|NC_000913.2|_1182052_1181006		Spermidine/putrescine-binding periplasmic protein		CDS	bacterial extracellular solute-binding family protein			
-	1182049	1182843	795	Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)	peg	gi|49175990|ref|NC_000913.2|_1182843_1182049		ABC-type spermidine/putrescine transport system, permease component II		CDS	binding--dependent transport system inner membrane component family protein			
-	1182840	1183697	858	Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)	peg	gi|49175990|ref|NC_000913.2|_1183697_1182840		ABC-type spermidine/putrescine transport system, permease component I		CDS	binding--dependent transport system inner membrane component family protein			
-	1183681	1184817	1137	Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)	peg	gi|49175990|ref|NC_000913.2|_1184817_1183681		spermidine/putrescine ABC transporter ATP-binding subunit	3.6.3.31	CDS	polyamine ABC transporter, ATP-binding family protein	3.6.3.31		
-	1184796	1185011	216	FIG00639905: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1185011_1184796					putative predicted protein			
+	1185067	1186293	1227	Tripeptide aminopeptidase (EC 3.4.11.4)	peg	gi|49175990|ref|NC_000913.2|_1185169_1186293		peptidase T. Metallo peptidase. MEROPS family M20B	3.4.11.4	CDS	peptidase T	3.4.11.-	pepT	
-	1186342	1187463	1122	FIG002776: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1187463_1186342		Uncharacterized conserved protein		CDS	cupin superfamily protein			
-	1187539	1188999	1461	Sensor protein PhoQ (EC 2.7.13.3)	peg	gi|49175990|ref|NC_000913.2|_1188999_1187539		Signal transduction histidine kinase	2.7.13.3	CDS	sensor protein PhoQ	2.7.13.3	phoQ	
-	1188999	1189670	672	Transcriptional regulatory protein PhoP	peg	gi|49175990|ref|NC_000913.2|_1189670_1188999		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory protein phoP		phoP	
-	1189839	1191209	1371	Adenylosuccinate lyase (EC 4.3.2.2)	peg	gi|49175990|ref|NC_000913.2|_1191209_1189839		Adenylosuccinate lyase (EC 4.3.2.2)	4.3.2.2	CDS	adenylosuccinate lyase	4.3.2.2	purB	
-	1191213	1191854	642	FIG002903: a protein of unknown function perhaps involved in purine metabolism	peg	gi|49175990|ref|NC_000913.2|_1191854_1191213		Uncharacterized protein involved in purine metabolism		CDS	high frequency lysogenization protein hflD		hflD	
-	1191890	1192996	1107	tRNA-specific 2-thiouridylase MnmA	peg	gi|49175990|ref|NC_000913.2|_1192996_1191890		tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)	2.8.1.-	CDS	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	2.1.1.61	trmU	
-	1193050	1193511	462	Nudix-like NDP and NTP phosphohydrolase YmfB	peg	gi|49175990|ref|NC_000913.2|_1193511_1193050		ADP-ribose pyrophosphatase	3.6.1.-	CDS	phosphatase nudJ	3.6.1.-	nudJ	
-	1193521	1194174	654	Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_1194144_1193521		ribosomal large subunit pseudouridine synthase E (EC 5.4.99.-)	5.4.99.20	CDS	pseudouridine synthase family protein	5.4.99.-		
+	1194346	1195596	1251	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	peg	gi|49175990|ref|NC_000913.2|_1194346_1195596		isocitrate dehydrogenase (NADP) (EC 1.1.1.42)	1.1.1.42	CDS	isocitrate dehydrogenase, NADP-dependent	1.1.1.42	icd	
-	1196090	1196755	666				Methyltransferase domain.		CDS				
-	1196756	1197451	696	predicted inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_1196932_1196756		hypothetical protein		CDS	e14 prophage; predicted inner membrane domain protein		ymfE	
+	1197918	1198811	894	"cell death peptidase, inhibitor of T4 late gene expression"	peg	gi|49175990|ref|NC_000913.2|_1197918_1198811		Peptidase U49.		CDS	peptidase U49 family protein			
-	1198902	1200029	1128	Prophage lambda integrase	peg	gi|49175990|ref|NC_000913.2|_1200029_1198902		Bacteriophage lambda integrase, N-terminal domain./Phage integrase family.		CDS	phage integrase family protein			
-	1200010	1200255	246				Excisionase-like protein.		CDS				
-	1200999	1201307	309				hypothetical protein		CDS				
+	1200720	1201061	342	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1200720_1201061		hypothetical protein		CDS				
-	1201482	1202156	675	repressor	peg	gi|49175990|ref|NC_000913.2|_1201715_1201482		phage repressor protein. Serine peptidase. MEROPS family S24		CDS	peptidase S24-like family protein			
+	1202247	1202447	201	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1202247_1202447		hypothetical protein		CDS	conserved hypothetical protein			
+	1202491	1203048	558	FIG00639586: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1202491_1203048		hypothetical protein		CDS	putative predicted DNA-binding transcriptional regulator			
+	1203045	1203383	339				hypothetical protein		CDS				
+	1203224	1203403	180	FIG00643873: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1203224_1203403								
+	1203393	1204760	1368	"COG4626: Phage terminase-like protein, large subunit"	peg	gi|49175990|ref|NC_000913.2|_1203393_1204760		transcriptional regulator, GntR family		CDS	phage Terminase family protein			
+	1204772	1204954	183	FIG00640168: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1204772_1204954		hypothetical protein		CDS	putative membrane protein			
+	1204954	1205427	474	Phage portal protein	peg	gi|49175990|ref|NC_000913.2|_1204954_1205427		Phage-related protein		CDS	phage portal family protein			
+	1205396	1206145	750	Phage FluMu protein gp47	peg	gi|49175990|ref|NC_000913.2|_1205396_1206145		Uncharacterized homolog of phage Mu protein gp47		CDS	baseplate J-like family protein			
+	1206136	1206720	585	FIG121501: Prophage tail protein	peg	gi|49175990|ref|NC_000913.2|_1206136_1206720		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1206724	1207353	630	Prophage tail fiber protein	peg	gi|49175990|ref|NC_000913.2|_1206724_1207353		hypothetical protein		CDS	conserved hypothetical protein			
-	1207740	1208342	603	Phage tail fiber assembly protein	peg	gi|49175990|ref|NC_000913.2|_1208342_1207740		Caudovirales tail fibre assembly protein.		CDS	caudovirales tail fibre assembly family protein			
+	1207343	1207768	426	Phage tail fiber assembly protein	peg	gi|49175990|ref|NC_000913.2|_1207343_1207768		Caudovirales tail fibre assembly protein.		CDS	caudovirales tail fibre assembly family protein			
-	1208342	1208881	540	Prophage tail fiber protein	peg	gi|49175990|ref|NC_000913.2|_1208881_1208342		Phage Tail Collar Domain.		CDS	phage Tail Collar domain protein			
+	1208908	1209462	555	Phage DNA invertase	peg	gi|49175990|ref|NC_000913.2|_1208908_1209462		Site-specific recombinases, DNA invertase Pin homologs		CDS	resolvase, N terminal domain protein			
+	1209569	1210402	834	HNH nuclease	peg	gi|49175990|ref|NC_000913.2|_1209569_1210402		Predicted restriction endonuclease	3.1.21.-	CDS	HNH endonuclease family protein			
+	1210636	1210800	165	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	peg	gi|49175990|ref|NC_000913.2|_1210636_1210800		Isocitrate dehydrogenases		CDS	isocitrate/isopropylmalate dehydrogenase family protein			
-	1211926	1212330	405	FIG00638962: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1212330_1211926		Phage envelope protein		CDS	conserved hypothetical protein			
-	1212551	1213282	732	Putative HTH-type transcriptional regulator ycgE	peg	gi|49175990|ref|NC_000913.2|_1213282_1212551		Predicted transcriptional regulators		CDS	HTH-type transcriptional repressor YcgE		ycgE	
-	1213487	1214698	1212	Hypothetical protein ycgF	peg	gi|49175990|ref|NC_000913.2|_1214698_1213487		FOG: EAL domain		CDS	blue light- and temperature-regulated antirepressor YcgF		ycgF	
+	1215012	1215248	237				Biofilm development protein YmgB/AriR.		CDS				
+	1215592	1215858	267				Biofilm development protein YmgB/AriR.		CDS	putative two-component-system connector protein AriR			
+	1215971	1216219	249	FIG00638803: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1216043_1216219		hypothetical protein		CDS	putative protein involved in biofilm formation			
+	1216551	1218074	1524	FIG00638205: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1216590_1218074		FOG: EAL domain		CDS	EAL domain protein			
+	1218206	1218424	219	FIG00638313: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1218206_1218424		hypothetical protein		CDS	putative membrane protein			
+	1218824	1220344	1521	AidA-I adhesin-like protein	peg	gi|49175990|ref|NC_000913.2|_1218824_1220344		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
+	1220429	1221445	1017	AidA-I adhesin-like protein	peg	gi|49175990|ref|NC_000913.2|_1220552_1221445		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
-	1221528	1221857	330	FIG00637894: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1221857_1221528		hypothetical protein		CDS	conserved hypothetical protein			
-	1221867	1222211	345	FIG00639301: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1222211_1221867		Glycine zipper.		CDS	glycine zipper family protein			
+	1222918	1223130	213	Pertactin precursor	peg	gi|49175990|ref|NC_000913.2|_1222918_1223130					outer membrane autotransporter barrel domain protein			
-	1223502	1223768	267	Cell division topological specificity factor MinE	peg	gi|49175990|ref|NC_000913.2|_1223768_1223502		cell division topological specificity factor MinE		CDS	cell division topological specificity factor MinE		minE	
-	1223772	1224584	813	Septum site-determining protein MinD	peg	gi|49175990|ref|NC_000913.2|_1224584_1223772		septum site-determining protein MinD		CDS	septum site-determining protein MinD		minD	
-	1224608	1225303	696	Septum site-determining protein MinC	peg	gi|49175990|ref|NC_000913.2|_1225303_1224608		septum site-determining protein MinC		CDS	septum site-determining protein MinC		minC	
+	1225823	1226191	369	"orf, hypothetical protein"	peg	gi|49175990|ref|NC_000913.2|_1225823_1226191		Fels-1 Prophage Protein-like.		CDS	fels-1 Prophage Protein-like family protein			
-	1226294	1226695	402	FIG01045439: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1226695_1226294		Bacterial pre-peptidase C-terminal domain.		CDS	conserved hypothetical protein			
+	1226937	1227230	294	Protein YcgL	peg	gi|49175990|ref|NC_000913.2|_1227030_1227230		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1227302	1227961	660	FIG094199: Fumarylacetoacetate hydrolase	peg	gi|49175990|ref|NC_000913.2|_1227302_1227961		2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)		CDS	fumarylacetoacetate (FAA) hydrolase family protein			
+	1228038	1228499	462	YcgN (Fragment)	peg	gi|49175990|ref|NC_000913.2|_1228038_1228499		Uncharacterized conserved protein		CDS	flagellin N-methylase family protein			
-	1228706	1229617	912	"Hemolysin E, chromosomal"	peg	gi|49175990|ref|NC_000913.2|_1229617_1228706		Haemolysin E (HlyE).		CDS	hemolysin E, chromosomal		hlyE	
+	1229990	1230409	420	Error-prone repair protein UmuD	peg	gi|49175990|ref|NC_000913.2|_1229990_1230409		SOS response UmuD protein. Serine peptidase. MEROPS family S24	3.4.21.-	CDS	protein umuD	3.4.21.-	umuD	
+	1230409	1231677	1269	"Error-prone, lesion bypass DNA polymerase V (UmuC)"	peg	gi|49175990|ref|NC_000913.2|_1230409_1231677		Nucleotidyltransferase/DNA polymerase involved in DNA repair		CDS	impB/mucB/samB family protein			
-	1231723	1232253	531	"Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation"	peg	gi|49175990|ref|NC_000913.2|_1232253_1231723		Thiol:disulfide interchange protein DsbB		CDS	disulfide bond formation DsbB family protein			
-	1232399	1233940	1542	Na+/H+ antiporter NhaB	peg	gi|49175990|ref|NC_000913.2|_1233940_1232399		sodium/proton antiporter, NhaB family (TC 2.A.34.1.1)		CDS	na+/H+ antiporter NhaB		nhaB	
+	1234161	1234880	720	"Transcriptional regulator for fatty acid degradation FadR, GntR family"	peg	gi|49175990|ref|NC_000913.2|_1234161_1234880		transcriptional regulator, GntR family		CDS	fatty acid metabolism transcriptional regulator FadR		fadR	
-	1234932	1236464	1533	Stage V sporulation protein involved in spore cortex synthesis (SpoVR)	peg	gi|49175990|ref|NC_000913.2|_1236464_1234932		Uncharacterized conserved protein		CDS	spoVR like family protein			
+	1236794	1238092	1299	D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	peg	gi|49175990|ref|NC_000913.2|_1236821_1238092		D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	1.4.99.1	CDS	flavin containing amine oxidoreductase family protein			
+	1238102	1239172	1071	"alanine racemase 2, catabolic"	peg	gi|49175990|ref|NC_000913.2|_1238102_1239172		alanine racemase (EC 5.1.1.1)	5.1.1.1	CDS	alanine racemase	5.1.1.1	alr	
-	1239558	1241294	1737	Cell volume regulation protein A	peg	gi|49175990|ref|NC_000913.2|_1241294_1239558		potassium/proton antiporter, CPA1 family (TC 2.A.36)		CDS	transporter associated domain protein			
-	1241389	1242303	915	Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)	peg	gi|49175990|ref|NC_000913.2|_1242303_1241389		murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66	3.4.17.13	CDS	murein tetrapeptide carboxypeptidase	3.4.17.13	ldcA	
+	1242403	1243014	612	Membrane-bound lytic murein transglycosylase E (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_1242403_1243014		Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	transglycosylase SLT domain protein			
-	1243016	1243750	735	Inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_1243750_1243016		Predicted glycosyltransferase		CDS	flagellar brake protein YcgR		ycgR	
+	1243951	1244205	255	UPF0410 protein YmgE	peg	gi|49175990|ref|NC_000913.2|_1243951_1244205		Predicted membrane protein		CDS	transglycosylase associated family protein			
+	1244383	1244823	441	FIG00637958: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1244455_1244823		hypothetical protein		CDS	conserved hypothetical protein			
-	1244902	1246599	1698	COG1626: Neutral trehalase( EC:3.2.1.28 )	peg	gi|49175990|ref|NC_000913.2|_1246599_1244902		Neutral trehalase	3.2.1.28	CDS	periplasmic trehalase	3.2.1.28	treA	
-	1246919	1248337	1419	"Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component / DHA-specific phosphocarrier protein HPr / DHA-specific EI component"	peg	gi|49175990|ref|NC_000913.2|_1248337_1246919		Phosphotransferase System HPr (HPr) Family		CDS	PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM	2.7.1.-	dhaM	
-	1248348	1248980	633	"Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL"	peg	gi|49175990|ref|NC_000913.2|_1248980_1248348		dihydroxyacetone kinase DhaL subunit (EC 2.7.1.121)	2.7.1.-	CDS	dihydroxyacetone kinase, L subunit	2.7.-.-	dhaL	
-	1248991	1250061	1071	"Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK"	peg	gi|49175990|ref|NC_000913.2|_1250061_1248991		dihydroxyacetone kinase DhaK subunit (EC 2.7.1.121)	2.7.1.-	CDS	dihydroxyacetone kinase, DhaK subunit	2.7.1.-	dhaK	
+	1250289	1252208	1920	Phosphoenolpyruvate-dihydroxyacetone phosphotransferase operon regulatory protein DhaR	peg	gi|49175990|ref|NC_000913.2|_1250289_1252208		Transcriptional activator of acetoin/glycerol metabolism		CDS	bacterial regulatory , Fis family protein			
-	1252308	1255175	2868	Putative adhesion and penetration protein	peg	gi|49175990|ref|NC_000913.2|_1255175_1252308		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
+	1255520	1255699	180	FIG00638199: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1255520_1255699		hypothetical protein		CDS	conserved hypothetical protein			
-	1255944	1257035	1092	GTP-binding and nucleic acid-binding protein YchF	peg	gi|49175990|ref|NC_000913.2|_1257035_1255944		GTP-binding protein YchF		CDS	GTP-dependent nucleic acid-binding protein engD		engD	
-	1257152	1257736	585	Peptidyl-tRNA hydrolase (EC 3.1.1.29)	peg	gi|49175990|ref|NC_000913.2|_1257736_1257152		peptidyl-tRNA hydrolase (EC 3.1.1.29)	3.1.1.29	CDS	peptidyl-tRNA hydrolase	3.1.1.29	pth	
+	1258014	1258292	279	Putative membrane protein YchH	peg	gi|49175990|ref|NC_000913.2|_1258014_1258292		Protein of unknown function (DUF2583).		CDS	conserved hypothetical protein			
-	1258347	1260026	1680	Putative sulfate permease	peg	gi|49175990|ref|NC_000913.2|_1260026_1258347		high affinity sulphate transporter 1		CDS	putative sulfate transporter ychM			
-	1260151	1261164	1014	Ribose-phosphate pyrophosphokinase (EC 2.7.6.1)	peg	gi|49175990|ref|NC_000913.2|_1261098_1260151		ribose-phosphate pyrophosphokinase	2.7.6.1	CDS	ribose-phosphate pyrophosphokinase	2.7.6.1	prs	
-	1261249	1262100	852	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	peg	gi|49175990|ref|NC_000913.2|_1262100_1261249		4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	2.7.1.148	CDS	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	2.7.1.148	ispE	
-	1262100	1262723	624	Outer membrane lipoprotein LolB	peg	gi|49175990|ref|NC_000913.2|_1262723_1262100		outer membrane lipoprotein LolB		CDS	outer membrane lipoprotein LolB		lolB	
+	1262937	1264193	1257	Glutamyl-tRNA reductase (EC 1.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_1262937_1264193		glutamyl-tRNA reductase (EC 1.2.1.70)	1.2.1.70	CDS	glutamyl-tRNA reductase	1.2.1.70	hemA	
+	1264235	1265317	1083	Peptide chain release factor 1	peg	gi|49175990|ref|NC_000913.2|_1264235_1265317		bacterial peptide chain release factor 1 (bRF-1)		CDS	peptide chain release factor 1		prfA	
+	1265317	1266150	834	"Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2"	peg	gi|49175990|ref|NC_000913.2|_1265317_1266150		[protein release factor]-glutamine N5-methyltransferase (EC 2.1.1.-)	2.1.1.-	CDS	protein-(glutamine-N5) methyltransferase, release factor-specific	2.1.1.-	prmC	
+	1266147	1266539	393	FIG002082: Protein SirB2	peg	gi|49175990|ref|NC_000913.2|_1266147_1266539		Uncharacterized protein conserved in bacteria		CDS	protein sirB2		sirB2	
+	1266543	1267352	810	FIG002708: Protein SirB1	peg	gi|49175990|ref|NC_000913.2|_1266543_1267352		Uncharacterized conserved protein		CDS	tetratricopeptide repeat family protein			
+	1267388	1268242	855	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55)	peg	gi|49175990|ref|NC_000913.2|_1267388_1268242		3-deoxy-8-phosphooctulonate synthase	2.5.1.55	CDS	3-deoxy-8-phosphooctulonate synthase	2.5.1.55	kdsA	
-	1269972	1271072	1101	Calcium/proton antiporter	peg	gi|49175990|ref|NC_000913.2|_1271072_1269972		calcium/proton exchanger		CDS	calcium/proton antiporter		chaA	
+	1271342	1271572	231	Cation transport regulator chaB	peg	gi|49175990|ref|NC_000913.2|_1271342_1271572		Putative cation transport regulator		CDS	cation transport regulator ChaB		chaB	
+	1271709	1272425	717	Cation transport protein chaC	peg	gi|49175990|ref|NC_000913.2|_1271709_1272425		Uncharacterized protein involved in cation transport		CDS	chaC-like family protein			
-	1272469	1272822	354	Putative ACR protein	peg	gi|49175990|ref|NC_000913.2|_1272822_1272469		Uncharacterized conserved protein involved in intracellular sulfur reduction		CDS	protein ychN		ychN	
+	1273007	1274401	1395	Invasin	peg	gi|49175990|ref|NC_000913.2|_1273007_1274401		Protein of unknown function (DUF3442).		CDS	conserved hypothetical protein			
-	1274402	1275052	651	Nitrate/nitrite response regulator protein	peg	gi|49175990|ref|NC_000913.2|_1275052_1274402		two component transcriptional regulator, LuxR family		CDS	response regulator		narL	
-	1275045	1276841	1797	Nitrate/nitrite sensor protein (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_1276841_1275045		Signal transduction histidine kinase, nitrate/nitrite-specific	2.7.13.3	CDS	nitrate/nitrite sensor protein narX	2.7.13.3	narX	
+	1276867	1277085	219	FIG00637970: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1276867_1277085		hypothetical protein		CDS	putative predicted protein			
+	1277180	1278571	1392	Nitrate/nitrite transporter	peg	gi|49175990|ref|NC_000913.2|_1277180_1278571		nitrite extrusion protein (nitrite facilitator)		CDS	nitrite extrusion protein 1		narK	
+	1279087	1282830	3744	Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1279087_1282830		respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4	CDS	nitrate reductase, alpha subunit	1.7.99.4		
+	1282827	1284365	1539	Respiratory nitrate reductase beta chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1282827_1284365		respiratory nitrate reductase beta subunit	1.7.99.4	CDS	nitrate reductase, beta subunit	1.7.99.4	narH	
+	1284362	1285072	711	Respiratory nitrate reductase delta chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1284362_1285072		respiratory nitrate reductase chaperone NarJ		CDS	nitrate reductase molybdenum cofactor assembly chaperone		narJ	
+	1285072	1285749	678	Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1285072_1285749		respiratory nitrate reductase gamma subunit	1.7.99.4	CDS	respiratory nitrate reductase, gamma subunit	1.7.99.4	narI	
-	1287005	1287847	843	Formyltetrahydrofolate deformylase (EC 3.5.1.10)	peg	gi|49175990|ref|NC_000913.2|_1287847_1287005		formyltetrahydrofolate deformylase (EC 3.5.1.10)	3.5.1.10	CDS	formyltetrahydrofolate deformylase	3.5.1.10	purU	
-	1287897	1288355	459	UPF0225 protein YchJ	peg	gi|49175990|ref|NC_000913.2|_1288256_1287897		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1288429	1289373	945	UPF0028 protein YchK	peg	gi|49175990|ref|NC_000913.2|_1288468_1289373		Predicted esterase of the alpha-beta hydrolase superfamily		CDS	patatin-like phospholipase family protein			
+	1289465	1290478	1014	Hnr protein	peg	gi|49175990|ref|NC_000913.2|_1289465_1290478		Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	protein hnr		hnr	
+	1290680	1291588	909	UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	peg	gi|49175990|ref|NC_000913.2|_1290680_1291588		UDP-glucose pyrophosphorylase (EC 2.7.7.9)	2.7.7.9	CDS	UTP-glucose-1-phosphate uridylyltransferase	2.7.7.9	galU	
-	1291732	1292145	414	DNA-binding protein H-NS	peg	gi|49175990|ref|NC_000913.2|_1292145_1291732		nucleoid protein H-NS		CDS	DNA-binding protein H-NS		hns	
+	1292750	1293367	618	Thymidine kinase (EC 2.7.1.21)	peg	gi|49175990|ref|NC_000913.2|_1292840_1293367		thymidine kinase (EC 2.7.1.21)	2.7.1.21	CDS	thymidine kinase family protein			
-	1293649	1294239	591	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1294239_1293649		hypothetical protein		CDS	putative acetaldehyde dehydrogenase 2			
-	1294360	1294545	186	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1294545_1294360		Insertion element 4 transposase N-terminal.		CDS	insertion element 4 transposase N-terminal family protein			
-	1294669	1297344	2676	Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)	peg	gi|49175990|ref|NC_000913.2|_1297344_1294669		acetaldehyde dehydrogenase (EC 1.2.1.10)/alcohol dehydrogenase AdhE (EC 1.1.1.1)	1.2.1.10, 1.1.1.1	CDS	aldehyde-alcohol dehydrogenase	1.2.1.10	adhE	
+	1297821	1298468	648	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_1297821_1298468		membrane protein, MarC family		CDS	marC integral membrane family protein			
-	1298626	1298787	162	FIG00638240: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1298787_1298626		hypothetical protein		CDS	putative predicted protein			
+	1298495	1298650	156				hypothetical protein		CDS				
+	1299161	1300837	1677	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"	peg	gi|49175990|ref|NC_000913.2|_1299206_1300837		ABC-type oligopeptide transport system, periplasmic component		CDS	periplasmic oligopeptide-binding protein		oppA	
+	1300923	1301843	921	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	peg	gi|49175990|ref|NC_000913.2|_1300923_1301843		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	oligopeptide transport system permease protein oppB		oppB	
+	1301858	1302766	909	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	peg	gi|49175990|ref|NC_000913.2|_1301858_1302766		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	oligopeptide transport system permease protein oppC		oppC	
+	1302778	1303791	1014	Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)	peg	gi|49175990|ref|NC_000913.2|_1302778_1303791		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			
+	1303788	1304792	1005	Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)	peg	gi|49175990|ref|NC_000913.2|_1303788_1304792		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			
-	1304845	1305174	330	FIG002901: hypothetical protein co-occurring with Cardiolipin synthetase	peg	gi|49175990|ref|NC_000913.2|_1305174_1304845		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1305209	1306669	1461	Cardiolipin synthetase (EC 2.7.8.-)	peg	gi|49175990|ref|NC_000913.2|_1306669_1305209		cardiolipin synthetase 2 (EC 2.7.8.-)	2.7.8.-	CDS	cardiolipin synthase	2.7.8.-	cls	
-	1307040	1308293	1254	Potassium channel protein	peg	gi|49175990|ref|NC_000913.2|_1308248_1307040		K+ transport systems, NAD-binding component		CDS	voltage-gated potassium channel Kch		kch	
-	1308593	1308889	297	YciL protein	peg	gi|49175990|ref|NC_000913.2|_1308889_1308593		Uncharacterized protein conserved in bacteria		CDS	protein yciI		yciI	
+	1309098	1309832	735	"Ferric siderophore transport system, periplasmic binding protein TonB"	peg	gi|49175990|ref|NC_000913.2|_1309098_1309832		TonB family C-terminal domain		CDS	protein tonB		tonB	
-	1309872	1310270	399	"Acyl-CoA thioesterase YciA, involved in membrane biogenesis"	peg	gi|49175990|ref|NC_000913.2|_1310216_1309872		Acyl-CoA hydrolase	3.1.2.-	CDS	conserved hypothetical protein			
-	1310375	1310914	540	Intracellular septation protein IspA	peg	gi|49175990|ref|NC_000913.2|_1310914_1310375		intracellular septation protein A		CDS	intracellular septation protein A		ispZ	
-	1310944	1311687	744	"Membrane protein YciC, linked to IspA"	peg	gi|49175990|ref|NC_000913.2|_1311687_1310944		Uncharacterised protein family (UPF0259).		CDS	conserved hypothetical protein			
+	1312044	1312682	639	Outer membrane protein W precursor	peg	gi|49175990|ref|NC_000913.2|_1312044_1312682		Outer membrane protein W		CDS	outer membrane protein W		ompW	
-	1312742	1313248	507	Protein YciE	peg	gi|49175990|ref|NC_000913.2|_1313248_1312742		Uncharacterized protein conserved in bacteria		CDS	protein yciE		yciE	
-	1313294	1313815	522	Protein yciF	peg	gi|49175990|ref|NC_000913.2|_1313815_1313294		Uncharacterized protein conserved in bacteria		CDS	protein yciF		yciF	
-	1313880	1314059	180	Conidiation-specific protein 10	peg	gi|49175990|ref|NC_000913.2|_1314059_1313880		Stress-induced bacterial acidophilic repeat motif.		CDS	conserved hypothetical protein			
-	1314440	1315246	807	Tryptophan synthase alpha chain (EC 4.2.1.20)	peg	gi|49175990|ref|NC_000913.2|_1315246_1314440		tryptophan synthase, alpha chain (EC 4.2.1.20)	4.2.1.20	CDS	tryptophan synthase, alpha subunit	4.2.1.20	trpA	
-	1315246	1316439	1194	Tryptophan synthase beta chain (EC 4.2.1.20)	peg	gi|49175990|ref|NC_000913.2|_1316439_1315246		tryptophan synthase, beta chain (EC 4.2.1.20)	4.2.1.20	CDS	tryptophan synthase, beta subunit	4.2.1.20	trpB	
-	1316451	1317809	1359	Indole-3-glycerol phosphate synthase (EC 4.1.1.48) / Phosphoribosylanthranilate isomerase (EC 5.3.1.24)	peg	gi|49175990|ref|NC_000913.2|_1317809_1316451		Indole-3-glycerol phosphate synthase	4.1.1.48, 5.3.1.24	CDS	tryptophan biosynthesis protein trpCF	5.3.1.24	trpC	
-	1317813	1319408	1596	"Anthranilate synthase, amidotransferase component (EC 4.1.3.27) / Anthranilate phosphoribosyltransferase (EC 2.4.2.18) # TrpAb/TrpB"	peg	gi|49175990|ref|NC_000913.2|_1319408_1317813		glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase	2.4.2.18, 4.1.3.27	CDS	anthranilate synthase component II	2.4.2.18	trpD	
-	1319408	1320970	1563	"Anthranilate synthase, aminase component (EC 4.1.3.27)"	peg	gi|49175990|ref|NC_000913.2|_1320970_1319408		anthranilate synthase, component I (EC 4.1.3.27)	4.1.3.27	CDS	anthranilate synthase component I	4.1.3.27	trpE	
+	1321244	1322125	882	"COG0613, Predicted metal-dependent phosphoesterases (PHP family)"	peg	gi|49175990|ref|NC_000913.2|_1321265_1322125		Predicted metal-dependent phosphoesterases (PHP family)		CDS	PHP domain protein			
+	1322086	1322742	657	YciO family	peg	gi|49175990|ref|NC_000913.2|_1322086_1322742		Sua5/YciO/YrdC/YwlC family protein		CDS	conserved hypothetical protein			
+	1322770	1324665	1896	FIG00637979: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1322770_1324665		Predicted membrane protein (DUF2207).		CDS	conserved hypothetical protein			
+	1324876	1325751	876	Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_1324876_1325751		ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-)	5.4.99.22	CDS	pseudouridine synthase family protein	5.4.99.-		
-	1325791	1326381	591	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	peg	gi|49175990|ref|NC_000913.2|_1326381_1325791		cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17)	2.5.1.17	CDS	cob(I)yrinic acid a,c-diamide adenosyltransferase	2.5.1.17	cobO	
-	1326378	1327136	759	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_1327136_1326378		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	conserved hypothetical protein			
+	1327356	1328405	1050	Possible protease sohB (EC 3.4.21.-)	peg	gi|49175990|ref|NC_000913.2|_1327356_1328405		inner membrane peptidase. Serine peptidase. MEROPS family S49	3.4.21.-	CDS	putative protease sohB			
-	1328441	1328692	252	Protein yciN	peg	gi|49175990|ref|NC_000913.2|_1328692_1328441		Protein of unknown function (DUF2498).		CDS	protein yciN		yciN	
+	1329072	1331669	2598	DNA topoisomerase I (EC 5.99.1.2)	peg	gi|49175990|ref|NC_000913.2|_1329072_1331669		DNA topoisomerase I (EC 5.99.1.2)	5.99.1.2	CDS	DNA topoisomerase I	5.99.1.2	topA	
+	1331879	1332853	975	Cys regulon transcriptional activator CysB	peg	gi|49175990|ref|NC_000913.2|_1331879_1332853		Transcriptional regulator		CDS	HTH-type transcriptional regulator CysB		cysB	
+	1333315	1333482	168	FIG00638229: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1333315_1333482		hypothetical protein		CDS	conserved hypothetical protein			
+	1333855	1336530	2676	Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)	peg	gi|49175990|ref|NC_000913.2|_1333855_1336530		aconitase (EC 4.2.1.3)	4.2.1.3	CDS	aconitate hydratase 1	4.2.1.3	acnA	
-	1336594	1337184	591	GTP cyclohydrolase II (EC 3.5.4.25)	peg	gi|49175990|ref|NC_000913.2|_1337184_1336594		GTP cyclohydrolase II (EC 3.5.4.25)	3.5.4.25	CDS	GTP cyclohydrolase-2	3.5.4.25	ribA	
+	1337354	1338118	765	Phosphatidylglycerophosphatase B (EC 3.1.3.27)	peg	gi|49175990|ref|NC_000913.2|_1337354_1338118		phosphatidylglycerophosphatase (EC 3.1.3.27)	3.1.3.27	CDS	phosphatidylglycerophosphatase B	3.1.3.27	pgpB	
+	1338267	1338575	309	Inner membrane protein yciS	peg	gi|49175990|ref|NC_000913.2|_1338267_1338575		Predicted membrane protein		CDS	inner membrane protein yciS		yciS	
+	1338582	1339751	1170	"Heat shock (predicted periplasmic) protein YciM, precursor"	peg	gi|49175990|ref|NC_000913.2|_1338582_1339751		Predicted N-acetylglucosaminyl transferase		CDS	TPR repeat family protein			
+	1339885	1340682	798	Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	peg	gi|49175990|ref|NC_000913.2|_1339945_1340682		orotidine-5'-phosphate decarboxylase (EC 4.1.1.23)	4.1.1.23	CDS	orotidine 5'-phosphate decarboxylase	4.1.1.23	pyrF	
+	1340679	1341008	330	Translation initiation factor SUI1-related protein	peg	gi|49175990|ref|NC_000913.2|_1340679_1341008		translation initiation factor 1 (eIF-1/SUI1)		CDS	conserved hypothetical protein			
-	1341134	1341352	219	Osmotically inducible lipoprotein B precursor	peg	gi|49175990|ref|NC_000913.2|_1341352_1341134		Glycine zipper 2TM domain.		CDS	glycine zipper 2TM domain protein			
-	1341621	1342370	750	Transcriptional regulatory protein YciT	peg	gi|49175990|ref|NC_000913.2|_1342370_1341621		transcriptional regulator, DeoR family		CDS	deoR C terminal sensor domain protein			
-	1342460	1342633	174	FIG00638067: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1342633_1342460		hypothetical protein		CDS	putative uPF0509 protein yciZ			
-	1342781	1344766	1986	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1344598_1342781		diguanylate cyclase/phosphodiesterase	3.1.4.52	CDS	cyclic di-GMP phosphodiesterase Gmr	3.1.4.52	gmr	
-	1345002	1346936	1935	Exoribonuclease II (EC 3.1.13.1)	peg	gi|49175990|ref|NC_000913.2|_1346936_1345002		exoribonuclease II	3.1.13.1	CDS	exoribonuclease II	3.1.13.1	rnb	
-	1347004	1348131	1128	FIG01220641: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1348131_1347004		Uncharacterized protein conserved in bacteria		CDS	putative amidase/amidotransferase			
-	1348275	1349063	789	Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	peg	gi|49175990|ref|NC_000913.2|_1349063_1348275		Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	1.3.1.9	CDS	enoyl-[acyl-carrier-protein] reductase [NADH] FabI	1.3.1.9	fabI	
-	1349431	1349784	354	FIG00638073: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1349784_1349431					conserved hypothetical protein			
-	1349852	1350658	807	Peptide transport system ATP-binding protein SapF	peg	gi|49175990|ref|NC_000913.2|_1350658_1349852		ABC-type antimicrobial peptide transport system, ATPase component		CDS	peptide transport system ATP-binding protein SapF		sapF	
-	1350660	1351652	993	Peptide transport system ATP-binding protein SapD	peg	gi|49175990|ref|NC_000913.2|_1351652_1350660		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			
-	1351652	1352542	891	Peptide transport system permease protein SapC	peg	gi|49175990|ref|NC_000913.2|_1352542_1351652		ABC-type antimicrobial peptide transport system, permease component		CDS	peptide transport system permease protein sapC		sapC	
-	1352529	1353494	966	Peptide transport system permease protein SapB	peg	gi|49175990|ref|NC_000913.2|_1353494_1352529		ABC-type antimicrobial peptide transport system, permease component		CDS	peptide transport system permease protein sapB		sapB	
-	1353491	1355134	1644	Peptide transport periplasmic protein SapA	peg	gi|49175990|ref|NC_000913.2|_1355110_1353491		ABC-type oligopeptide transport system, periplasmic component		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
-	1355447	1355692	246	FIG00639322: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1355692_1355447		Protein of unknown function (DUF2543).		CDS	conserved hypothetical protein			
-	1355826	1357211	1386	Putrescine importer	peg	gi|49175990|ref|NC_000913.2|_1357211_1355826		putrescine:proton symporter, AAT family (TC 2.A.3.1.13)		CDS	putrescine importer PuuP		puuP	
-	1357514	1358932	1419	Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)	peg	gi|49175990|ref|NC_000913.2|_1358932_1357514		glutamate--putrescine ligase	6.3.1.11	CDS	gamma-glutamylputrescine synthetase PuuA	6.3.1.11	puuA	
+	1359156	1359908	753	Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94)	peg	gi|49175990|ref|NC_000913.2|_1359432_1359908		gamma-glutamyl-gamma-aminobutyrate hydrolase	3.5.1.94	CDS	glutamine amidotransferase class-I family protein			
+	1359935	1360492	558	Putrescine utilization regulator	peg	gi|49175990|ref|NC_000913.2|_1359935_1360492		transcriptional regulator, XRE family with cupin sensor		CDS	HTH-type transcriptional regulator PuuR		puuR	
+	1360767	1362254	1488	Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_1360767_1362254		gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase	1.2.1.-	CDS	aldehyde dehydrogenase PuuC	1.2.1.5	puuC	
+	1362256	1363536	1281	Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)	peg	gi|49175990|ref|NC_000913.2|_1362256_1363536		gamma-glutamylputrescine oxidase	1.4.3.-	CDS	gamma-glutamylputrescine oxidoreductase	1.4.3.-	puuB	
+	1363574	1364839	1266	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	peg	gi|49175990|ref|NC_000913.2|_1363574_1364839		4-aminobutyrate aminotransferase apoenzyme (EC 2.6.1.19)	2.6.1.19	CDS	4-aminobutyrate transaminase	2.6.1.19	gabT	
-	1364959	1365936	978	Psp operon transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_1365936_1364959		psp operon transcriptional activator PspF		CDS	psp operon transcriptional activator		pspF	
+	1366103	1366771	669	Phage shock protein A	peg	gi|49175990|ref|NC_000913.2|_1366103_1366771		phage shock protein A (PspA) family protein		CDS	phage shock protein A		pspA	
+	1366825	1367049	225	Phage shock protein B	peg	gi|49175990|ref|NC_000913.2|_1366825_1367049		phage shock protein B		CDS	phage shock protein B		pspB	
+	1367049	1367408	360	Phage shock protein C	peg	gi|49175990|ref|NC_000913.2|_1367049_1367408		phage shock protein C (PspC) family protein		CDS	phage shock protein C		pspC	
+	1367417	1367638	222	Phage shock protein D	peg	gi|49175990|ref|NC_000913.2|_1367417_1367638		phage shock protein PspD		CDS	phage shock PspD family protein			
+	1367713	1368027	315	Phage shock protein E precursor	peg	gi|49175990|ref|NC_000913.2|_1367713_1368027		thiosulfate sulfurtransferase (EC 2.8.1.1)		CDS	thiosulfate sulfurtransferase PspE	2.8.1.1	pspE	
+	1368240	1369919	1680	Putative sucrose phosphorylase (EC 2.4.1.7)	peg	gi|49175990|ref|NC_000913.2|_1368240_1369919		sucrose phosphorylase (EC 2.4.1.7)	2.4.1.7	CDS	alpha amylase, catalytic domain protein			
+	1369933	1371225	1293	"ABC-type sugar transport system, periplasmic binding protein YcjN"	peg	gi|49175990|ref|NC_000913.2|_1369933_1371225		carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	bacterial extracellular solute-binding family protein			
+	1371246	1372127	882	Inner membrane ABC transporter permease protein YcjO	peg	gi|49175990|ref|NC_000913.2|_1371246_1372127		carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
+	1372114	1372956	843	Inner membrane ABC transporter permease protein YcjP	peg	gi|49175990|ref|NC_000913.2|_1372114_1372956		carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	binding--dependent transport system inner membrane component family protein			
+	1372987	1374039	1053	Zinc-type alcohol dehydrogenase YcjQ	peg	gi|49175990|ref|NC_000913.2|_1372987_1374039		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	zinc-binding dehydrogenase family protein			
+	1374058	1374846	789	Sugar phosphate isomerases/epimerases family protein YcjR	peg	gi|49175990|ref|NC_000913.2|_1374058_1374846		Sugar phosphate isomerases/epimerases		CDS	xylose isomerase-like TIM barrel family protein			
+	1374856	1375911	1056	"Putative oxidoreductase YcjS (EC 1.-.-.-), NADH-binding"	peg	gi|49175990|ref|NC_000913.2|_1374868_1375911		Predicted dehydrogenases and related proteins		CDS	conserved hypothetical protein			
+	1375908	1378175	2268	Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)	peg	gi|49175990|ref|NC_000913.2|_1375908_1378175		Trehalose and maltose hydrolases (possible phosphorylases)	3.2.1.-	CDS	glycosyl hydrolase family 65 central catalytic domain protein			
+	1378172	1378831	660	Beta-phosphoglucomutase (EC 5.4.2.6)	peg	gi|49175990|ref|NC_000913.2|_1378172_1378831		beta-phosphoglucomutase	5.4.2.6	CDS	beta-phosphoglucomutase	5.4.2.6	pgmB	
+	1378845	1379813	969	"Multiple sugar ABC transporter, ATP-binding protein"	peg	gi|49175990|ref|NC_000913.2|_1378845_1379813		carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	ABC transporter family protein			
+	1379971	1380876	906	Outer membrane protein G precursor	peg	gi|49175990|ref|NC_000913.2|_1379971_1380876		Outer membrane protein G (OmpG).		CDS	outer membrane protein G		ompG	
-	1380987	1381985	999	"Transcriptional regulator YcjW, LacI family, possibly involved in maltodextrin utilization pathway"	peg	gi|49175990|ref|NC_000913.2|_1381985_1380987		transcriptional regulator, LacI family		CDS	helix-turn-helix family protein			
+	1382141	1383538	1398	Conserved protein YcjX with nucleoside triphosphate hydrolase domain	peg	gi|49175990|ref|NC_000913.2|_1382141_1383538		Predicted ATPase		CDS	conserved hypothetical protein			
+	1383535	1384596	1062	Membrane protein YcjF	peg	gi|49175990|ref|NC_000913.2|_1383535_1384596		TIGR01620 family protein		CDS	conserved hypothetical protein			
+	1384744	1386285	1542	Transcriptional repressor protein TyrR	peg	gi|49175990|ref|NC_000913.2|_1384744_1386285		Transcriptional regulator of aromatic amino acids metabolism		CDS	transcriptional regulatory protein tyrR		tyrR	
-	1386329	1386835	507	"Thiol peroxidase, Tpx-type (EC 1.11.1.15)"	peg	gi|49175990|ref|NC_000913.2|_1386835_1386329		thiol peroxidase (atypical 2-Cys peroxiredoxin) (EC 1.11.1.5)	1.11.1.15	CDS	thiol peroxidase	1.11.1.-	tpx	
-	1387894	1388622	729	Gamma-D-Glutamyl-meso-Diaminopimelate Amidase	peg	gi|49175990|ref|NC_000913.2|_1388622_1387894		Predicted carboxypeptidase		CDS	zinc carboxypeptidase family protein			
+	1386954	1387919	966	L-alanine-DL-glutamate epimerase	peg	gi|49175990|ref|NC_000913.2|_1386954_1387919		L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily		CDS	L-Ala-D/L-Glu epimerase	5.1.1.-	ycjG	
-	1388704	1388886	183	Oxidoreductase (putative)	peg	gi|49175990|ref|NC_000913.2|_1388886_1388704		hypothetical protein		CDS	conserved hypothetical protein			
-	1388957	1389877	921	Dienelactone hydrolase and related enzymes	peg	gi|49175990|ref|NC_000913.2|_1389877_1388957		Hydrolases of the alpha/beta superfamily		CDS	conserved hypothetical protein			
+	1390015	1390914	900	LysR family transcriptional regulator YcjZ	peg	gi|49175990|ref|NC_000913.2|_1390015_1390914		transcriptional regulator, LysR family		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	1391251	1392864	1614	Periplasmic Murein Peptide-Binding Protein MppA	peg	gi|49175990|ref|NC_000913.2|_1391251_1392864		ABC-type oligopeptide transport system, periplasmic component		CDS	periplasmic murein peptide-binding protein		mppA	
-	1392915	1393946	1032	Mechanosensitive ion channel	peg	gi|49175990|ref|NC_000913.2|_1393946_1392915		Small-conductance mechanosensitive channel		CDS	mechanosensitive ion channel family protein			
+	1394100	1395116	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1394100_1395116		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
+	1395389	1395646	258	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_1395389_1395646		Protein of unknown function (DUF2534).		CDS	conserved hypothetical protein			
-	1395696	1396646	951	Universal stress protein E	peg	gi|49175990|ref|NC_000913.2|_1396646_1395696		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein E		uspE	
-	1396798	1397550	753	Fumarate and nitrate reduction regulatory protein	peg	gi|49175990|ref|NC_000913.2|_1397550_1396798		cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	fumarate and nitrate reduction regulatory protein		fnr	
-	1397745	1398260	516	Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	peg	gi|49175990|ref|NC_000913.2|_1398260_1397745		O-6-methylguanine DNA methyltransferase	2.1.1.63	CDS	methylated-DNA--protein-cysteine methyltransferase	2.1.1.63	ogt	
-	1398271	1399797	1527	Aminobenzoyl-glutamate transport protein	peg	gi|49175990|ref|NC_000913.2|_1399677_1398271		p-Aminobenzoyl-glutamate transporter family		CDS	aminobenzoyl-glutamate transport protein		abgT	
-	1399834	1401279	1446	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit B"	peg	gi|49175990|ref|NC_000913.2|_1401279_1399834		p-Aminobenzoyl-glutamate hydrolase, B subunit		CDS	amidohydrolase family protein			
-	1401279	1402589	1311	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A"	peg	gi|49175990|ref|NC_000913.2|_1402580_1401279		p-aminobenzoyl-glutamate hydrolase, A subunit		CDS	indole-3-acetyl-aspartic acid hydrolase	3.5.1.-	iaaH	
+	1402765	1403673	909	"Regulatory protein (induces abgABT, used to catabolize p-aminobenzoyl-glutamate)"	peg	gi|49175990|ref|NC_000913.2|_1402765_1403673		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	1403654	1403833	180										
+	1404003	1404566	564	FIG00638524: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1404003_1404566		Uncharacterized protein conserved in bacteria		CDS	smr domain protein			
-	1404587	1405879	1293	FIG00638107: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1405879_1404587		PAS domain S-box/diguanylate cyclase (GGDEF) domain		CDS	putative diguanylate cyclase YdaM			
+	1406074	1407057	984	Zinc transport protein ZntB	peg	gi|49175990|ref|NC_000913.2|_1406074_1407057		Mg2+ and Co2+ transporters		CDS	zinc transport protein ZntB		zntB	
+	1407332	1407505	174				hypothetical protein		CDS				
+	1407535	1408908	1374	ATP-dependent 23S rRNA helicase DbpA	peg	gi|49175990|ref|NC_000913.2|_1407535_1408908		ATP-dependent RNA helicase DbpA (EC 5.99.1.-)	3.6.4.13	CDS	ATP-independent RNA helicase dbpA	3.6.4.13	dbpA	
-	1409037	1409972	936	tRNA(Cytosine32)-2-thiocytidine synthetase	peg	gi|49175990|ref|NC_000913.2|_1409972_1409037		tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4)		CDS	tRNA 2-thiocytidine biosynthesis protein TtcA		ttcA	
-	1410024	1411259	1236	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1411259_1410024		Site-specific recombinase XerD		CDS	putative lambdoid prophage Rac integrase			
-	1411261	1411476	216	ydaQ protein	peg	gi|49175990|ref|NC_000913.2|_1411476_1411261		Putative excisionase (DUF1233).		CDS	putative excisionase			
-	1411555	1411764	210				Protein of unknown function (DUF1187).		CDS				
-	1412008	1412817	810	Recombinational DNA repair protein RecT (prophage associated)	peg	gi|49175990|ref|NC_000913.2|_1412817_1412008		recombinase, phage RecT family		CDS	protein recT		recT	
-	1412810	1415410	2601	Exodeoxyribonuclease VIII (EC 3.1.11.-)	peg	gi|49175990|ref|NC_000913.2|_1415410_1412810		Enterobacterial exodeoxyribonuclease VIII./PDDEXK-like domain of unknown function (DUF3799).	3.1.11.-	CDS	exodeoxyribonuclease 8	3.1.11.-	recE	
-	1415512	1415787	276	Phage protein	peg	gi|49175990|ref|NC_000913.2|_1415787_1415512		hypothetical protein		CDS	putative rac prophage; predicted protein			
-	1415862	1416038	177	Putative bacteriophage protein	peg	gi|49175990|ref|NC_000913.2|_1416038_1415862		Rtr1/RPAP2 family.		CDS	rtr1/RPAP2 family protein			
-	1416032	1416253	222	Kil protein	peg	gi|49175990|ref|NC_000913.2|_1416253_1416032		hypothetical protein		CDS	protein kil		kil	
-	1417180	1417335	156	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1417335_1417180		Protein of unknown function (DUF1391).		CDS	conserved hypothetical protein			
+	1416572	1417183	612	Superinfection exclusion protein B	peg	gi|49175990|ref|NC_000913.2|_1416878_1417183		Superinfection exclusion protein B.		CDS	superinfection exclusion B family protein			
-	1417789	1418265	477				hypothetical protein		CDS				
+	1418389	1418685	297				Uncharacterized protein conserved in bacteria, prophage-related		CDS				
+	1418708	1419130	423	FIG00639855: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1418708_1419130		Protein of unknown function (DUF1019).		CDS	conserved hypothetical protein			
+	1419143	1420000	858	FIG00638968: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1419143_1420000		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1420007	1420753	747	Bacteriophage-encoded homolog of DNA replication protein DnaC	peg	gi|49175990|ref|NC_000913.2|_1420007_1420753		phage DNA replication protein (predicted replicative helicase loader)		CDS	DNA replication protein dnaC		dnaC	
+	1420776	1421336	561	Uncharacterized protein ydaW	peg	gi|49175990|ref|NC_000913.2|_1420776_1421336		Mn-dependent transcriptional regulator		CDS	conserved hypothetical protein			
+	1421363	1421668	306	Endopeptidase (EC 3.4.-.-)	peg	gi|49175990|ref|NC_000913.2|_1421363_1421668		Bacteriophage lysis protein.		CDS	bacteriophage lysis family protein			
+	1421806	1423263	1458	Trk system potassium uptake protein TrkG	peg	gi|49175990|ref|NC_000913.2|_1421806_1423263		potassium uptake protein, TrkH family		CDS	trk system potassium uptake protein trkG		trkG	
+	1423401	1423664	264	Chromosome (plasmid) partitioning protein ParB	peg	gi|49175990|ref|NC_000913.2|_1423401_1423664		Predicted transcriptional regulators		CDS	parB-like nuclease domain protein			
+	1423645	1424004	360	FIG00642729: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1423645_1424004		hypothetical protein		CDS	putative rac prophage; predicted protein			
+	1424478	1425506	1029	Phage tail length tape-measure protein 1	peg	gi|49175990|ref|NC_000913.2|_1424478_1425506		Prophage tail length tape measure protein.		CDS	prophage tail length tape measure family protein			
-	1425770	1426750	981	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1426750_1425770		transposase, IS5 family		CDS	transposase DDE domain protein			
+	1426838	1427008	171	Attachment invasion locus protein precursor	peg	gi|49175990|ref|NC_000913.2|_1426838_1427008					enterobacterial Ail/Lom family protein			
-	1427009	1427182	174	FIG00638731: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1427182_1427009					putative predicted protein			
-	1427296	1427529	234	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1427529_1427296					conserved hypothetical protein			
-	1427570	1428307	738	Phage tail fiber protein	peg	gi|49175990|ref|NC_000913.2|_1428307_1427570		hypothetical protein		CDS	conserved domain protein			
+	1428438	1430435	1998	Phage tail fiber protein	peg	gi|49175990|ref|NC_000913.2|_1428438_1430435		Phage tail fibre repeat./Phage Tail Collar Domain.		CDS	phage tail fibre repeat family protein			
+	1430435	1431010	576	Phage tail fiber assembly protein	peg	gi|49175990|ref|NC_000913.2|_1430435_1431010		Bacteriophage tail assembly protein		CDS	tail fiber assembly protein		tfa	
-	1431108	1431698	591	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1431698_1431108		Site-specific recombinases, DNA invertase Pin homologs		CDS	putative DNA-invertase from lambdoid prophage Rac			
-	1432015	1432248	234	FIG00640097: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1432173_1432015		hypothetical protein		CDS	putative rac prophage; predicted DNA-binding transcriptional regulator			
+	1432770	1432943	174	FIG00639451: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1432770_1432943					conserved hypothetical protein			
-	1433209	1433643	435	Universal stress protein F	peg	gi|49175990|ref|NC_000913.2|_1433643_1433209		Universal stress protein UspA and related nucleotide-binding proteins		CDS	conserved hypothetical protein			
-	1433784	1434917	1134	Outer membrane protein N precursor	peg	gi|49175990|ref|NC_000913.2|_1434917_1433784		Outer membrane protein (porin)		CDS	outer membrane protein N		ompN	
-	1435284	1438808	3525	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)	peg	gi|49175990|ref|NC_000913.2|_1438808_1435284		pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	1.2.7.-	CDS	ferredoxin (flavodoxin) oxidoreductase	1.2.7.1	nifJ	
-	1439345	1439767	423	Heat shock protein hslJ	peg	gi|49175990|ref|NC_000913.2|_1439767_1439345		Heat shock protein		CDS	heat shock protein hslJ		hslJ	
+	1439082	1439348	267	probable lipoprotein YPO2331	peg	gi|49175990|ref|NC_000913.2|_1439082_1439348		Putative hemolysin		CDS	conserved hypothetical protein			
-	1439878	1440867	990	D-lactate dehydrogenase (EC 1.1.1.28)	peg	gi|49175990|ref|NC_000913.2|_1440867_1439878		Lactate dehydrogenase and related dehydrogenases	1.1.1.28	CDS	D-lactate dehydrogenase	1.1.1.28	ldhA	
+	1441075	1443714	2640	Putative uncharacterized protein ydbH	peg	gi|49175990|ref|NC_000913.2|_1441075_1443714		Dicarboxylate transport.		CDS	dicarboxylate transport family protein			
+	1443711	1443896	186	Uncharacterized protein ynbE; probable lipoprotein STY1424	peg	gi|49175990|ref|NC_000913.2|_1443711_1443896		YnbE-like lipoprotein.		CDS	ynbE-like lipofamily protein			
+	1443904	1444230	327	"Putative uncharacterized protein ydbL, may be related to amine metabolism"	peg	gi|49175990|ref|NC_000913.2|_1443904_1444230		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1444402	1445307	906	Transcriptional activator feaR	peg	gi|49175990|ref|NC_000913.2|_1445295_1444402		transcriptional regulator, AraC family		CDS	transcriptional activator feaR		feaR	
+	1445543	1447042	1500	Phenylacetaldehyde dehydrogenase (EC 1.2.1.39)	peg	gi|49175990|ref|NC_000913.2|_1445543_1447042		phenylacetaldehyde dehydrogenase (EC 1.2.1.39)	1.2.1.39	CDS	phenylacetaldehyde dehydrogenase	1.2.1.39	feaB	
-	1447100	1449373	2274	Monoamine oxidase (1.4.3.4)	peg	gi|49175990|ref|NC_000913.2|_1449373_1447100		tyramine oxidase (EC 1.4.3.-)	1.4.3.21	CDS	primary amine oxidase	1.4.3.21	tynA	
-	1449621	1451666	2046	COG1012: NAD-dependent aldehyde dehydrogenases	peg	gi|49175990|ref|NC_000913.2|_1451666_1449621		phenylacetic acid degradation protein paaN		CDS	phenylacetic acid degradation protein paaN		paaN	
+	1451951	1452880	930	"Phenylacetate-CoA oxygenase, PaaG subunit"	peg	gi|49175990|ref|NC_000913.2|_1451951_1452880		phenylacetate-CoA oxygenase, PaaG subunit		CDS	phenylacetic acid degradation protein paaA		paaA	
+	1452892	1453179	288	"Phenylacetate-CoA oxygenase, PaaH subunit"	peg	gi|49175990|ref|NC_000913.2|_1452892_1453179		phenylacetate-CoA oxygenase, PaaH subunit		CDS	phenylacetic acid degradation B family protein			
+	1453188	1453934	747	"Phenylacetate-CoA oxygenase, PaaI subunit"	peg	gi|49175990|ref|NC_000913.2|_1453188_1453934		phenylacetate-CoA oxygenase, PaaI subunit		CDS	phenylacetic acid degradation protein paaC		paaC	
+	1453949	1454446	498	"Phenylacetate-CoA oxygenase, PaaJ subunit"	peg	gi|49175990|ref|NC_000913.2|_1453949_1454446		phenylacetate-CoA oxygenase, PaaJ subunit		CDS	phenylacetate-CoA oxygenase, PaaJ subunit		paaJ	
+	1454454	1455524	1071	"Phenylacetate-CoA oxygenase/reductase, PaaK subunit"	peg	gi|49175990|ref|NC_000913.2|_1454454_1455524		phenylacetate-CoA oxygenase/reductase, PaaK subunit		CDS	2Fe-2S iron-sulfur cluster binding domain protein			
+	1455521	1456288	768	Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17)	peg	gi|49175990|ref|NC_000913.2|_1455521_1456288		Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	putative enoyl-CoA hydratase, mitochondrial			
+	1456288	1457076	789	Phenylacetate degradation enoyl-CoA hydratase PaaB (EC 4.2.1.17)	peg	gi|49175990|ref|NC_000913.2|_1456288_1457076		phenylacetate degradation probable enoyl-CoA hydratase paaB		CDS	phenylacetate degradation putative enoyl-CoA hydratase PaaB	4.2.1.17	paaB	
+	1457078	1458505	1428	3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_1457078_1458505		3-hydroxyacyl-CoA dehydrogenase PaaC	1.1.1.157	CDS	3-hydroxyacyl-CoA dehydrogenase PaaC	1.1.1.-	paaC	
+	1458495	1458917	423	"Phenylacetic acid degradation protein PaaD, thioesterase"	peg	gi|49175990|ref|NC_000913.2|_1458495_1458917		phenylacetic acid degradation protein PaaD	3.1.2.-	CDS	phenylacetic acid degradation protein PaaD		paaD	
+	1458917	1460122	1206	"Phenylacetic acid degradation protein PaaE, ketothiolase"	peg	gi|49175990|ref|NC_000913.2|_1458917_1460122		3-oxoadipyl-CoA thiolase	2.3.1.-	CDS	3-oxoadipyl-CoA thiolase	2.3.1.174	pcaF	
+	1460149	1461462	1314	Phenylacetate-coenzyme A ligase (EC 6.2.1.30) PaaF	peg	gi|49175990|ref|NC_000913.2|_1460149_1461462		phenylacetate-CoA ligase (EC 6.2.1.30)	6.2.1.30	CDS	phenylacetate-CoA ligase	6.2.1.30	paaF	
+	1461563	1462513	951	Phenylacetic acid degradation operon negative regulatory protein PaaX	peg	gi|49175990|ref|NC_000913.2|_1461563_1462513		transcriptional regulator, PaaX family		CDS	phenylacetic acid degradation operon negative regulatory protein PaaX		paaX	
+	1462495	1463085	591	Phenylacetic acid degradation protein PaaY	peg	gi|49175990|ref|NC_000913.2|_1462495_1463085		phenylacetic acid degradation protein PaaY		CDS	phenylacetic acid degradation protein PaaY		paaY	
-	1465945	1466850	906	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1466850_1465945		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	1463416	1465974	2559	BigB	peg	gi|49175990|ref|NC_000913.2|_1463434_1465974		hypothetical protein		CDS	autotransporter (AT) family porin		ydbA	
-	1466808	1467173	366	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1467173_1466808		Transposase and inactivated derivatives		CDS	transposase family protein			
+	1467382	1468533	1152	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1467382_1468533		Transposase and inactivated derivatives, IS30 family		CDS	integrase core domain protein			
+	1468714	1472037	3324	putative BigB-like protein	peg	gi|49175990|ref|NC_000913.2|_1469113_1472037		Autotransporter beta-domain.		CDS	autotransporter beta-domain protein			
+	1472245	1473105	861	Aldo-keto reductase	peg	gi|49175990|ref|NC_000913.2|_1472245_1473105		Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	putative oxidoreductase YdbC			
+	1473168	1475474	2307	FIG00638289: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1473168_1475474		Protein of unknown function (DUF2773).		CDS	conserved hypothetical protein			
+	1475645	1476250	606	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	peg	gi|49175990|ref|NC_000913.2|_1475645_1476250		Phosphatidylglycerophosphate synthase		CDS	inner membrane protein ynbA		ynbA	
+	1476250	1477146	897	Phosphatidate cytidylyltransferase (EC 2.7.7.41)	peg	gi|49175990|ref|NC_000913.2|_1476250_1477146		Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase	2.7.7.41	CDS	cytidylyltransferase family protein			
+	1477162	1478919	1758	Putative lipase in cluster with Phosphatidate cytidylyltransferase	peg	gi|49175990|ref|NC_000913.2|_1477162_1478919		Lysophospholipase		CDS	conserved hypothetical protein			
+	1478909	1480225	1317	Ser/Thr and Tyr protein phosphatase (dual specificity)	peg	gi|49175990|ref|NC_000913.2|_1478957_1480225		Predicted protein-tyrosine phosphatase		CDS	conserved hypothetical protein			
-	1480279	1480884	606	FMN-dependent NADH-azoreductase	peg	gi|49175990|ref|NC_000913.2|_1480884_1480279		Acyl carrier protein phosphodiesterase	1.7.-	CDS	NADPH-dependent FMN reductase family protein			
+	1481085	1484987	3903	ATP-dependent helicase HrpA	peg	gi|49175990|ref|NC_000913.2|_1481085_1484987		ATP-dependent helicase HrpA	3.6.4.13	CDS	ATP-dependent helicase HrpA	3.6.4.-	hrpA	
+	1485259	1486059	801	Protein ydcF	peg	gi|49175990|ref|NC_000913.2|_1485259_1486059		Uncharacterized conserved protein		CDS	protein ydcF		ydcF	
+	1486256	1487695	1440	Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21)	peg	gi|49175990|ref|NC_000913.2|_1486256_1487695		lactaldehyde dehydrogenase (EC 1.2.1.22)	1.2.1.21, 1.2.1.22	CDS	lactaldehyde dehydrogenase	1.2.1.21	aldA	
-	1487737	1487988	252	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	peg	gi|49175990|ref|NC_000913.2|_1487988_1487737		Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase		CDS	glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain protein			
-	1487985	1488389	405	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	peg	gi|49175990|ref|NC_000913.2|_1488389_1487985		Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase		CDS	glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain protein			
+	1488890	1489456	567	Cytochrome b(561)	peg	gi|49175990|ref|NC_000913.2|_1488890_1489456		Cytochrome B561		CDS	conserved hypothetical protein			
+	1489701	1489874	174	FIG00638461: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1489701_1489874		hypothetical protein		CDS	conserved hypothetical protein			
-	1489986	1490153	168				hypothetical protein		CDS				
-	1490090	1490241	152										
+	1490494	1492134	1641	Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)	peg	gi|49175990|ref|NC_000913.2|_1490542_1492134		methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	methyl-accepting chemotaxis protein III		trg	
-	1492172	1493095	924	LysR family transcriptional regulator YdcI	peg	gi|49175990|ref|NC_000913.2|_1493095_1492172		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	1493312	1494655	1344	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_1493312_1494655		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1494916	1496535	1620	Glucans biosynthesis protein D precursor	peg	gi|49175990|ref|NC_000913.2|_1494916_1496535		Periplasmic glucans biosynthesis protein		CDS	glucans biosynthesis protein D		mdoD	
+	1496675	1496899	225	YdcH protein	peg	gi|49175990|ref|NC_000913.2|_1496675_1496899		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1497493	1498473	981	FIG005189: putative transferase clustered with tellurite resistance proteins TehA/TehB	peg	gi|49175990|ref|NC_000913.2|_1498473_1497493		hypothetical protein		CDS	putative transferase			
+	1496962	1497501	540	Ribosomal-protein-L7p-serine acetyltransferase	peg	gi|49175990|ref|NC_000913.2|_1496962_1497501		[LSU ribosomal protein L12P]-serine N-acetyltransferase (EC:2.3.1.-)	2.3.1.-	CDS	ribosomal-protein-serine acetyltransferase	2.3.1.-	rimL	
+	1498585	1499589	1005	Tellurite resistance protein TehA	peg	gi|49175990|ref|NC_000913.2|_1498585_1499589		C4-dicarboxylate transporter/malic acid transport protein		CDS	tellurite resistance protein tehA		tehA	
+	1499586	1500179	594	Tellurite resistance protein TehB	peg	gi|49175990|ref|NC_000913.2|_1499586_1500179		tellurite resistance protein TehB		CDS	tellurite resistance protein TehB		tehB	
+	1500481	1501149	669	Uncharacterized membrane lipoprotein clustered with tellurite resistance proteins TehA/TehB	peg	gi|49175990|ref|NC_000913.2|_1500481_1501149		Protein of unknown function (DUF3313).		CDS	conserved hypothetical protein			
-	1501167	1501334	168	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1501334_1501167					transposase IS200 like family protein			
-	1501386	1501673	288				Transposase and inactivated derivatives		CDS				
+	1501741	1502889	1149	putative virulence protein	peg	gi|49175990|ref|NC_000913.2|_1501741_1502889		transposase, IS605 OrfB family, central region		CDS	transposase, IS605 OrfB family			
-	1502929	1504104	1176	Benzoate transport protein	peg	gi|49175990|ref|NC_000913.2|_1504104_1502929		benzoate transporter		CDS	inner membrane protein ydcO		ydcO	
+	1504196	1504732	537	"Transcriptional regulator yidN, Cro/CI family"	peg	gi|49175990|ref|NC_000913.2|_1504196_1504732		transcriptional regulator, XRE family with cupin sensor		CDS	helix-turn-helix family protein			
+	1504763	1506766	2004	putative collagenase	peg	gi|49175990|ref|NC_000913.2|_1504763_1506766		Collagenase and related proteases	3.4.-	CDS	conserved hypothetical protein			
-	1506858	1507028	171	FIG01045143: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1507028_1506858		Protein of unknown function (DUF2554).		CDS	conserved hypothetical protein			
+	1507310	1507486	177				YcfA-like protein.		CDS				
+	1507511	1507948	438	FIG00638106: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1507511_1507948		Uncharacterized conserved protein		CDS	antitoxin HicB		hicB	
+	1508027	1509433	1407	COG1167: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	peg	gi|49175990|ref|NC_000913.2|_1508027_1509433		transcriptional regulator, GntR family		CDS	conserved hypothetical protein			
+	1509678	1510823	1146	"ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)"	peg	gi|49175990|ref|NC_000913.2|_1509678_1510823		Spermidine/putrescine-binding periplasmic protein		CDS	bacterial extracellular solute-binding family protein			
+	1510841	1511854	1014	Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)	peg	gi|49175990|ref|NC_000913.2|_1510841_1511854		ABC-type spermidine/putrescine transport systems, ATPase components		CDS	ABC transporter family protein			
+	1511855	1512796	942	Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)	peg	gi|49175990|ref|NC_000913.2|_1511855_1512796		ABC-type spermidine/putrescine transport system, permease component I		CDS	inner membrane ABC transporter permease protein ydcU		ydcU	
+	1512786	1513580	795	Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)	peg	gi|49175990|ref|NC_000913.2|_1512786_1513580		ABC-type spermidine/putrescine transport system, permease component II		CDS	inner membrane ABC transporter permease protein ydcV		ydcV	
+	1513602	1515026	1425	4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19)	peg	gi|49175990|ref|NC_000913.2|_1513602_1515026		1-pyrroline dehydrogenase	1.2.1.19	CDS	1-pyrroline dehydrogenase	1.2.1.19	ydcW	
+	1515338	1515586	249	FIG00638290: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1515338_1515586		Protein of unknown function (DUF2566).		CDS	conserved hypothetical protein			
+	1515672	1515905	234	FIG01045262: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1515672_1515905		Protein of unknown function (DUF2526).		CDS	conserved hypothetical protein			
-	1515906	1516355	450	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_1516355_1515906		Uncharacterized protein conserved in bacteria		CDS	inner membrane protein ydcZ		ydcZ	
-	1516352	1516933	582	Putative acetyltransferase	peg	gi|49175990|ref|NC_000913.2|_1516933_1516352		Sortase and related acyltransferases	2.3.1.183	CDS	acetyltransferase family protein			
+	1517051	1518088	1038	Putative oxidoreductase YncB	peg	gi|49175990|ref|NC_000913.2|_1517051_1518088		Putative NADP-dependent oxidoreductases		CDS	zinc-binding dehydrogenase family protein			
+	1518286	1518951	666	"Transcriptional regulator, GntR family"	peg	gi|49175990|ref|NC_000913.2|_1518286_1518951		transcriptional regulator, GntR family		CDS	HTH-type transcriptional regulator mcbR		mcbR	
-	1518987	1521089	2103	Probable tonB-dependent receptor yncD precursor	peg	gi|49175990|ref|NC_000913.2|_1521089_1518987		TonB-dependent siderophore receptor		CDS	tonB-dependent siderophore receptor family protein			
+	1521331	1522392	1062	FIG00638561: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1521331_1522392		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	1522505	1524004	1500	L-asparagine permease	peg	gi|49175990|ref|NC_000913.2|_1524004_1522505		asparagine:proton symporter, AAT family (TC 2.A.3.1.8)		CDS	amino acid permease family protein			
+	1524271	1524888	618	Uncharacterized GST-like protein yncG	peg	gi|49175990|ref|NC_000913.2|_1524271_1524888		Glutathione S-transferase		CDS	putative glutathione S-transferase			
+	1524964	1525176	213	FIG00641231: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1524964_1525176		hypothetical protein		CDS	conserved hypothetical protein			
+	1525914	1527962	2049	core protein	peg	gi|49175990|ref|NC_000913.2|_1525914_1527962		RHS repeat-associated core domain		CDS	RHS repeat-associated core domain protein			
+	1527946	1528428	483	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1528195_1528428		hypothetical protein		CDS	putative dCTP deaminase			
+	1528610	1529356	747	Transposase	peg	gi|49175990|ref|NC_000913.2|_1528610_1529356		Transposase		CDS	H repeat-associated protein yhhI		yhhI	
+	1529840	1530976	1137	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1529840_1530976		transposase, IS4 family		CDS	H repeat-associated protein ydcC		ydcC	
-	1531306	1531875	570	NAD(P)H-flavin oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_1531875_1531306		Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	flavin reductase like domain protein			
+	1531076	1531309	234	Probable tautomerase ydcE (EC 5.3.2.-)	peg	gi|49175990|ref|NC_000913.2|_1531076_1531309		Uncharacterized protein, 4-oxalocrotonate tautomerase homolog	5.3.2.-	CDS	tautomerase pptA	5.3.2.-	pptA	
+	1532048	1532893	846	N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118)	peg	gi|49175990|ref|NC_000913.2|_1532048_1532893		Arylamine N-acetyltransferase	2.3.1.118	CDS	N-hydroxyarylamine O-acetyltransferase	2.3.1.118	nhoA	
-	1532989	1533882	894	Phenazine biosynthesis protein PhzF	peg	gi|49175990|ref|NC_000913.2|_1533882_1532989		phenazine biosynthesis protein PhzF family		CDS	conserved hypothetical protein			
-	1533961	1534641	681	Respiratory nitrate reductase gamma chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1534641_1533961		respiratory nitrate reductase gamma subunit	1.7.99.4	CDS	respiratory nitrate reductase, gamma subunit	1.7.99.4	narI	
-	1534638	1535333	696	Respiratory nitrate reductase delta chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1535333_1534638		respiratory nitrate reductase chaperone NarJ		CDS	nitrate reductase molybdenum cofactor assembly chaperone		narJ	
-	1535333	1536877	1545	Respiratory nitrate reductase beta chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1536877_1535333		respiratory nitrate reductase beta subunit	1.7.99.4	CDS	nitrate reductase, beta subunit	1.7.99.4	narH	
-	1536874	1540614	3741	Respiratory nitrate reductase alpha chain (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_1540614_1536874		respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4	CDS	nitrate reductase, alpha subunit	1.7.99.4		
-	1540696	1542084	1389	Nitrate/nitrite transporter	peg	gi|49175990|ref|NC_000913.2|_1542084_1540696		nitrite extrusion protein (nitrite facilitator)		CDS	nitrite extrusion protein 2		narU	
-	1542408	1542743	336				hypothetical protein		CDS				
-	1542782	1543738	957	"internalin, putative"	peg	gi|49175990|ref|NC_000913.2|_1543738_1542782		hypothetical protein		CDS	leucine Rich Repeat family protein			
-	1543762	1544052	291	Outer membrane porin protein NmpC precursor	peg	gi|49175990|ref|NC_000913.2|_1544052_1543762		Outer membrane protein (porin)		CDS	gram-negative porin family protein			
-	1544312	1545136	825	Permease of the drug/metabolite transporter (DMT) superfamily	peg	gi|49175990|ref|NC_000913.2|_1545136_1544312		EamA-like transporter family.		CDS	inner membrane protein yddG		yddG	
+	1545425	1546012	588				formate dehydrogenase (quinone-dependent) catalytic subunit		CDS	molybdopterin oxidoreductase family protein			
+	1545425	1548472	3048	Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing	peg	gi|49175990|ref|NC_000913.2|_1545425_1548472		formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2	CDS	formate dehydrogenase, alpha subunit	1.2.1.2		
+	1548485	1549369	885	"formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit"	peg	gi|49175990|ref|NC_000913.2|_1548485_1549369		formate dehydrogenase (quinone-dependent) iron-sulfur subunit		CDS	formate dehydrogenase, beta subunit	1.2.1.2	fdxH	
+	1549362	1550015	654	Formate dehydrogenase N gamma subunit (EC 1.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_1549362_1550015		formate dehydrogenase, gamma subunit		CDS	formate dehydrogenase, gamma subunit	1.2.1.2		
+	1550100	1550252	153	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1550100_1550252								
-	1550422	1550706	285	HigA protein (antitoxin to HigB)	peg	gi|49175990|ref|NC_000913.2|_1550706_1550422		addiction module antidote protein, HigA family		CDS	addiction module antidote protein, HigA family		higA	
-	1550852	1551862	1011	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|49175990|ref|NC_000913.2|_1551862_1550852		Zn-dependent alcohol dehydrogenases	1.1.1.1	CDS	alcohol dehydrogenase, propanol-preferring	1.1.1.1	adhP	
-	1551996	1553720	1725	NAD-dependent malic enzyme (EC 1.1.1.38)	peg	gi|49175990|ref|NC_000913.2|_1553720_1551996		NAD-dependent malic enzyme (EC 1.1.1.38)	1.1.1.38	CDS	NAD-dependent malic enzyme	1.1.1.38	maeA	
-	1554089	1554304	216	Bdm protein	peg	gi|49175990|ref|NC_000913.2|_1554304_1554089		Putative biofilm-dependent modulation protein.		CDS	biofilm-dependent modulation family protein			
+	1554649	1555080	432	Osmotically inducible protein C	peg	gi|49175990|ref|NC_000913.2|_1554649_1555080		peroxiredoxin, OsmC subfamily		CDS	peroxiredoxin osmC	1.11.1.15	osmC	
-	1555136	1556062	927	Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)	peg	gi|49175990|ref|NC_000913.2|_1556062_1555136		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			
-	1556055	1557041	987	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2); Putative hemine transporter ATP-binding subunit	peg	gi|49175990|ref|NC_000913.2|_1557041_1556055		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			
-	1557038	1557934	897	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2); Putative hemine transporter ATP-binding subunit	peg	gi|49175990|ref|NC_000913.2|_1557934_1557038		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	putative D,D-dipeptide transport system permease protein ddpC			
-	1557931	1558953	1023	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2); putative hemin permease	peg	gi|49175990|ref|NC_000913.2|_1558953_1557931		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	putative D,D-dipeptide transport system permease protein ddpB			
-	1558955	1560505	1551	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein"	peg	gi|49175990|ref|NC_000913.2|_1560415_1558955		ABC-type dipeptide transport system, periplasmic component		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
-	1560519	1561100	582	D-alanyl-D-alanine dipeptidase (EC 3.4.13.-); Putative metaloprotease associated with hemin utilization	peg	gi|49175990|ref|NC_000913.2|_1561100_1560519		D-alanyl-D-alanine dipeptidase	3.4.13.22	CDS	D-alanyl-D-alanine dipeptidase	3.4.13.22	ddpX	
-	1561358	1563781	2424	Heme-regulated cyclic AMP phosphodiesterase (EC 3.1.4.-)	peg	gi|49175990|ref|NC_000913.2|_1563781_1561358		diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)	3.1.4.52	CDS	oxygen sensor protein DosP	3.1.4.52	dosP	
-	1563782	1565164	1383	Putative Heme-regulated two-component response regulator	peg	gi|49175990|ref|NC_000913.2|_1565164_1563782		diguanylate cyclase (GGDEF) domain	2.7.7.65	CDS	diguanylate cyclase domain protein			
-	1565528	1566847	1320	COG1649 predicted glycoside hydrolase	peg	gi|49175990|ref|NC_000913.2|_1566682_1565528		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1566978	1568513	1536	Probable glutamate/gamma-aminobutyrate antiporter	peg	gi|49175990|ref|NC_000913.2|_1568513_1566978		glutamate:gamma-aminobutyrate antiporter, GGA family (TC 2.A.3.7.1)		CDS	gamma-aminobutyrate antiporter		gadC	
-	1568669	1570069	1401	Glutamate decarboxylase (EC 4.1.1.15)	peg	gi|49175990|ref|NC_000913.2|_1570069_1568669		glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15	CDS	glutamate decarboxylase	4.1.1.15		
-	1570431	1573214	2784	Probable zinc protease pqqL (EC 3.4.99.-)	peg	gi|49175990|ref|NC_000913.2|_1573214_1570431		Predicted Zn-dependent peptidases	3.4.24.-	CDS	peptidase M16 inactive domain protein			
-	1573271	1575643	2373	FIG00639422: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1575643_1573271		Outer membrane receptor proteins, mostly Fe transport		CDS	tonB-dependent Receptor Plug domain protein			
-	1575681	1577366	1686	Hypothetical ABC transporter ATP-binding protein yddA	peg	gi|49175990|ref|NC_000913.2|_1577273_1575681		ABC-type uncharacterized transport system, permease and ATPase components		CDS	inner membrane ABC transporter ATP-binding protein YddA		yddA	
-	1577657	1578814	1158	GALNS arylsulfatase regulator (Fe-S oxidoreductase)	peg	gi|49175990|ref|NC_000913.2|_1578814_1577657		anaerobic sulfatase-maturating enzyme		CDS	anaerobic sulfatase maturase	1.1.99.-		
-	1578866	1580548	1683	N-acetylgalactosamine 6-sulfate sulfatase (GALNS)	peg	gi|49175990|ref|NC_000913.2|_1580485_1578866		Arylsulfatase A and related enzymes		CDS	type I phosphodiesterase / nucleotide pyrophosphatase family protein			
-	1580950	1581711	762	HTH-type transcriptional regulator ydeO	peg	gi|49175990|ref|NC_000913.2|_1581711_1580950		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	1581786	1581983	198	FIG00638897: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1581983_1581786		hypothetical protein		CDS	two-component-system connector protein SafA		safA	
-	1582231	1584510	2280	Putative formate dehydrogenase oxidoreductase protein	peg	gi|49175990|ref|NC_000913.2|_1584510_1582231		oxidoreductase alpha (molybdopterin) subunit		CDS	protein ydeP		ydeP	
-	1584844	1585758	915	mannose-specific adhesin FimH	peg	gi|49175990|ref|NC_000913.2|_1585758_1584844		FimH, mannose binding./Fimbrial protein.		CDS	protein fimH		fimH	
-	1585817	1586320	504	type 1 fimbrae adaptor subunit FimG	peg	gi|49175990|ref|NC_000913.2|_1586107_1585817		P pilus assembly protein, pilin FimA		CDS	protein fimG		fimG	
-	1586333	1586863	531	type 1 fimbrae adaptor subunit FimF	peg	gi|49175990|ref|NC_000913.2|_1586863_1586333		P pilus assembly protein, pilin FimA		CDS	protein fimF		fimF	
-	1586877	1588025	1149	Putative outer membrane protein	peg	gi|49175990|ref|NC_000913.2|_1588025_1586877		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
-	1588878	1590200	1323	HipA protein	peg	gi|49175990|ref|NC_000913.2|_1590179_1588878		HipA N-terminal domain	2.7.11.1	CDS	serine/threonine-protein kinase HipA	2.7.11.1	hipA	
-	1590200	1590466	267	HipB protein	peg	gi|49175990|ref|NC_000913.2|_1590466_1590200		Predicted transcriptional regulators		CDS	antitoxin HipB		hipB	
-	1590689	1592089	1401	FIG00637907: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1592089_1590689		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
-	1592133	1596110	3978	FIG00637907: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1595972_1592133		autotransporter-associated beta strand repeat		CDS	putative predicted lipoprotein			
-	1596641	1598233	1593	Autoinducer 2 (AI-2) kinase LsrK (EC 2.7.1.-)	peg	gi|49175990|ref|NC_000913.2|_1598233_1596641		Sugar (pentulose and hexulose) kinases	2.7.1.-	CDS	autoinducer 2 kinase LsrK	2.7.1.-	lsrK	
-	1598312	1599265	954	"LsrR, transcriptional repressor of lsr operon"	peg	gi|49175990|ref|NC_000913.2|_1599265_1598312		Transcriptional regulator, contains sigma factor-related N-terminal domain		CDS	transcriptional regulator lsrR		lsrR	
+	1599514	1601049	1536	"Autoinducer 2 (AI-2) ABC transport system, fused AI2 transporter subunits and ATP-binding component"	peg	gi|49175990|ref|NC_000913.2|_1599514_1601049		autoinducer 2 ABC transporter ATP-binding protein		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
+	1601043	1602071	1029	"Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrC"	peg	gi|49175990|ref|NC_000913.2|_1601043_1602071		autoinducer 2 ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
+	1602071	1603063	993	"Autoinducer 2 (AI-2) ABC transport system, membrane channel protein LsrD"	peg	gi|49175990|ref|NC_000913.2|_1602071_1603063		autoinducer 2 ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
+	1603075	1604097	1023	"Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB"	peg	gi|49175990|ref|NC_000913.2|_1603075_1604097		autoinducer 2-binding protein		CDS	autoinducer 2-binding protein lsrB		lsrB	
+	1604124	1604999	876	Autoinducer 2 (AI-2) aldolase LsrF (EC 4.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_1604124_1604999		DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes	4.1.2.-	CDS	conserved hypothetical protein			
+	1605023	1605313	291	Autoinducer 2 (AI-2) modifying protein LsrG	peg	gi|49175990|ref|NC_000913.2|_1605023_1605313		Uncharacterized conserved protein		CDS	autoinducer 2-degrading protein lsrG		lsrG	
+	1605370	1606128	759	Trans-aconitate 2-methyltransferase (EC 2.1.1.144)	peg	gi|49175990|ref|NC_000913.2|_1605370_1606128		Trans-aconitate methyltransferase	2.1.1.144	CDS	trans-aconitate 2-methyltransferase	2.1.1.144	tam	
-	1606132	1607046	915	FIG00638206: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1607046_1606132		Predicted membrane protein		CDS	bestrophin, RFP-TM, chloride channel family protein			
-	1607253	1608704	1452	Altronate oxidoreductase (EC 1.1.1.58)	peg	gi|49175990|ref|NC_000913.2|_1608704_1607253		tagaturonate reductase (EC 1.1.1.58)	1.1.1.58	CDS	mannitol dehydrogenase Rossmann domain protein			
-	1608931	1609878	948	FIG00638480: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1609878_1608931		diguanylate cyclase (GGDEF) domain		CDS	diguanylate cyclase domain protein			
-	1609990	1610349	360	FIG00637950: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1610280_1609990		Domain of unknown function (DUF4186).		CDS	conserved hypothetical protein			
-	1610349	1611275	927	Glutaminase (EC 3.5.1.2)	peg	gi|49175990|ref|NC_000913.2|_1611275_1610349		L-glutaminase (EC 3.5.1.2)	3.5.1.2	CDS	glutaminase A	3.5.1.2	glsA	
-	1611339	1612727	1389	Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	peg	gi|49175990|ref|NC_000913.2|_1612727_1611339		succinate semialdehyde dehydrogenase (EC 1.2.1.16)	1.2.1.-	CDS	succinate semialdehyde dehydrogenase [NAD(P)+] Sad	1.2.1.16	sad	
+	1612828	1613709	882	LysR family transcriptional regulator YneJ	peg	gi|49175990|ref|NC_000913.2|_1612828_1613709		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	1613787	1614902	1116	FIG00638496: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1613787_1614902		hypothetical protein		CDS	conserved hypothetical protein			
+	1615052	1616242	1191	Probable sugar efflux transporter	peg	gi|49175990|ref|NC_000913.2|_1615052_1616242		Arabinose efflux permease		CDS	sugar efflux transporter		sotB	
-	1616267	1616932	666	Multiple antibiotic resistance protein MarC	peg	gi|49175990|ref|NC_000913.2|_1616932_1616267		membrane protein, MarC family		CDS	marC integral membrane family protein			
+	1617144	1617578	435	Multiple antibiotic resistance protein MarR	peg	gi|49175990|ref|NC_000913.2|_1617144_1617578		Transcriptional regulators		CDS	multiple antibiotic resistance protein marR		marR	
+	1617598	1617981	384	Multiple antibiotic resistance protein MarA	peg	gi|49175990|ref|NC_000913.2|_1617598_1617981		transcriptional regulator, AraC family		CDS	multiple antibiotic resistance protein marA		marA	
+	1618013	1618231	219	Multiple antibiotic resistance protein MarB	peg	gi|49175990|ref|NC_000913.2|_1618013_1618231		MarB protein.		CDS	marB family protein			
-	1618262	1619161	900	Permease of the drug/metabolite transporter (DMT) superfamily	peg	gi|49175990|ref|NC_000913.2|_1619161_1618262		Predicted permease, DMT superfamily		CDS	putative amino-acid metabolite efflux pump			
+	1619356	1620543	1188	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_1619356_1620543		Arabinose efflux permease		CDS	major Facilitator Superfamily protein			
-	1620984	1621874	891	FIG00637874: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1621874_1620984		diguanylate cyclase (GGDEF) domain		CDS	diguanylate cyclase YdeH	2.7.7.65	ydeH	
-	1622129	1622521	393	Putative periplasmic protein	peg	gi|49175990|ref|NC_000913.2|_1622521_1622129		TIGR00156 family protein		CDS	bacterial OB fold family protein			
+	1622797	1623315	519	"C-terminal domain of CinA paralog, YdeJ"	peg	gi|49175990|ref|NC_000913.2|_1622797_1623315		competence/damage-inducible protein CinA C-terminal domain		CDS	competence/damage-inducible CinA C-terminal domain protein			
-	1623359	1625404	2046	Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5)	peg	gi|49175990|ref|NC_000913.2|_1625404_1623359		peptidyl-dipeptidase Dcp (EC 3.4.15.5). Metallo peptidase. MEROPS family M03A	3.4.15.5	CDS	peptidyl-dipeptidase dcp	3.4.15.5	dcp	
+	1625541	1626287	747	3-hydroxypropionate dehydrogenase (EC 1.1.1.298)	peg	gi|49175990|ref|NC_000913.2|_1625541_1626287		Short-chain alcohol dehydrogenase of unknown specificity	1.1.1.-	CDS	NADP-dependent 3-hydroxy acid dehydrogenase YdfG	1.1.1.298	ydfG	
+	1626376	1627062	687	"Transcriptional regulator, GntR family"	peg	gi|49175990|ref|NC_000913.2|_1626376_1627062		transcriptional regulator, GntR family		CDS	conserved hypothetical protein			
+	1627239	1627442	204	FIG00638357: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1627239_1627442		putative selenium-binding protein YdfZ		CDS	putative selenoprotein ydfZ			
-	1627477	1628937	1461	D-mannonate oxidoreductase (EC 1.1.1.57)	peg	gi|49175990|ref|NC_000913.2|_1628937_1627477		Mannitol-1-phosphate/altronate dehydrogenases		CDS	mannitol dehydrogenase Rossmann domain protein			
-	1629026	1630309	1284	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_1630309_1629026		metabolite-proton symporter		CDS	H+ symporter family protein			
+	1631096	1631329	234	FIG00640097: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1631171_1631329		hypothetical protein		CDS	putative dNA-binding transcriptional regulator			
+	1631646	1632236	591	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1631646_1632236		Site-specific recombinases, DNA invertase Pin homologs		CDS	putative DNA-invertase from lambdoid prophage Rac			
-	1632334	1632909	576	Phage tail fiber assembly protein	peg	gi|49175990|ref|NC_000913.2|_1632909_1632334		Bacteriophage tail assembly protein		CDS	tail fiber assembly protein		tfa	
-	1632909	1633871	963	Phage tail fiber protein	peg	gi|49175990|ref|NC_000913.2|_1633871_1632909		Phage tail fibre repeat./Phage Tail Collar Domain.		CDS	phage tail fibre repeat family protein			
-	1633822	1634391	570	Terminase small subunit	peg	gi|49175990|ref|NC_000913.2|_1634391_1633822		Phage DNA packaging protein, Nu1 subunit of terminase		CDS	terminase small subunit		Nu1	
+	1634840	1635013	174	FIG00638841: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1634840_1635013					conserved hypothetical protein			
+	1635071	1635481	411				Phage envelope protein		CDS				
-	1635633	1635806	174	GnsB protein	peg	gi|49175990|ref|NC_000913.2|_1635806_1635633		GnsA/GnsB family.		CDS	gnsA/GnsB family protein			
-	1636452	1636837	386										
-	1636479	1636691	213	Cold shock-like protein cspI	peg	gi|49175990|ref|NC_000913.2|_1636691_1636479		cold-shock DNA-binding protein family		CDS	cold shock-like protein CspG		cspG	
-	1637054	1637551	498	FIG00639844: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1637536_1637054		Protein of unknown function (DUF2514).		CDS	conserved hypothetical protein			
-	1637548	1638081	534	COG3772: Phage-related lysozyme (muraminidase)	peg	gi|49175990|ref|NC_000913.2|_1638081_1637548		Phage-related lysozyme (muraminidase)		CDS	phage lysozyme family protein			
-	1638078	1638389	312	FIG00639051: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1638389_1638078		Protein of unknown function (DUF1327).		CDS	conserved hypothetical protein			
-	1638394	1638600	207	Phage holin	peg	gi|49175990|ref|NC_000913.2|_1638600_1638394		Lysis protein S.		CDS	lysis S family protein			
-	1639335	1639739	405										
-	1639363	1639578	216	Cold shock protein CspB	peg	gi|49175990|ref|NC_000913.2|_1639578_1639363		cold-shock DNA-binding protein family		CDS	cold shock protein CspA		cspA	
+	1639879	1640091	213	Cold shock protein CspF	peg	gi|49175990|ref|NC_000913.2|_1639879_1640091		cold-shock DNA-binding protein family		CDS	RNA chaperone, negative regulator of cspA transcription		cspE	
-	1640513	1641265	753	Phage antitermination protein Q	peg	gi|49175990|ref|NC_000913.2|_1641265_1640513		DnaJ-class molecular chaperone with C-terminal Zn finger domain		CDS	dnaJ central domain protein			
-	1641279	1642328	1050	Phage antitermination protein Q	peg	gi|49175990|ref|NC_000913.2|_1642328_1641279		Protein of unknown function (DUF968).		CDS	conserved hypothetical protein			
-	1642675	1642926	252	Hypothetical rem protein	peg	gi|49175990|ref|NC_000913.2|_1642926_1642675		hypothetical protein		CDS	conserved hypothetical protein			
-	1643143	1643298	156				Hok/gef family.		CDS				
-	1643370	1643657	288				addiction module toxin, RelE/StbE family		CDS				
-	1643657	1643896	240	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)	peg	gi|49175990|ref|NC_000913.2|_1643896_1643657		addiction module antitoxin, RelB/DinJ family		CDS	antitoxin RelB		relB	
+	1644429	1644761	333	Protein flxA	peg	gi|49175990|ref|NC_000913.2|_1644429_1644761		FlxA-like protein.		CDS	flxA-like family protein			
-	1645146	1645373	228				hypothetical protein		CDS				
-	1645370	1645660	291	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1645600_1645370		Protein of unknown function (DUF1019).		CDS	conserved hypothetical protein			
-	1645644	1645874	231	Putative regulator of cell division encoded by prophage CP-933O	peg	gi|49175990|ref|NC_000913.2|_1645874_1645644		hypothetical protein		CDS	putative division inhibition gene repressor protein DicB			
+	1645958	1646365	408				Predicted transcriptional regulators		CDS				
+	1646532	1646687	156	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1646532_1646687		Protein of unknown function (DUF1391).		CDS	conserved hypothetical protein			
+	1646847	1647065	219	FIG00637981: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1646847_1647065		hypothetical protein		CDS	conserved hypothetical protein			
-	1647069	1647233	165				hypothetical protein		CDS				
-	1647434	1647604	171	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1647604_1647434					conserved hypothetical protein			
+	1647633	1647821	189	Division inhibition protein dicB	peg	gi|49175990|ref|NC_000913.2|_1647633_1647821		DicB protein.		CDS	dicB family protein			
+	1647818	1648009	192	FIG00637919: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1647818_1648009		Protein of unknown function (DUF1482).		CDS	conserved hypothetical protein			
+	1648102	1649022	921	Exodeoxyribonuclease encoded by cryptic prophage CP-933P	peg	gi|49175990|ref|NC_000913.2|_1648102_1649022		hypothetical protein		CDS	exonuclease family protein			
+	1649019	1649561	543	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1649019_1649561		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	1649536	1650732	1197	"integrase fragment, cryptic prophage CP-933P"	peg	gi|49175990|ref|NC_000913.2|_1649536_1650732		Site-specific recombinase XerD		CDS	phage integrase family protein			
-	1650920	1651939	1020	Starvation sensing protein RspB	peg	gi|49175990|ref|NC_000913.2|_1651939_1650920		Threonine dehydrogenase and related Zn-dependent dehydrogenases	1.1.1.-	CDS	zinc-binding dehydrogenase family protein			
-	1651951	1653165	1215	Starvation sensing protein RspA	peg	gi|49175990|ref|NC_000913.2|_1653165_1651951		D-mannonate dehydratase (EC 4.2.1.8)		CDS	starvation-sensing protein rspA		rspA	
-	1653371	1653697	327	Protein of unknown function UPF0060	peg	gi|49175990|ref|NC_000913.2|_1653697_1653371		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1653832	1654173	342	putative secreted protein	peg	gi|49175990|ref|NC_000913.2|_1653832_1654173		Protein of unknown function (DUF1283).		CDS	conserved hypothetical protein			
+	1654208	1654768	561	Spermidine N1-acetyltransferase (EC 2.3.1.57)	peg	gi|49175990|ref|NC_000913.2|_1654208_1654768		spermine/spermidine N-acetyltransferase (EC 2.3.1.-)	2.3.1.57	CDS	spermidine N(1)-acetyltransferase	2.3.1.57	speG	
-	1654771	1655517	747	Hypothetical UPF0257 lipoprotein ynfC precursor	peg	gi|49175990|ref|NC_000913.2|_1655394_1654771		Uncharacterised protein family (UPF0257).		CDS	conserved hypothetical protein			
+	1655589	1655894	306	FIG00639146: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1655589_1655894		Protein of unknown function (DUF1161).		CDS	conserved hypothetical protein			
+	1656093	1658519	2427	"COG0243: Anaerobic dehydrogenases, typically selenocysteine-containing"	peg	gi|49175990|ref|NC_000913.2|_1656093_1658519		anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.97.1.9	CDS	putative dimethyl sulfoxide reductase chain ynfE			
+	1658577	1661003	2427	"Anaerobic selenate reductase, molybdenum cofactor-containing periplasmic protein # YnfF"	peg	gi|49175990|ref|NC_000913.2|_1658577_1661003		anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	1.97.1.9	CDS	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein			
+	1661014	1661631	618	Anaerobic selenate reductase protein YnfG	peg	gi|49175990|ref|NC_000913.2|_1661014_1661631		DMSO reductase, iron-sulfur subunit		CDS	dimethylsulfoxide reductase, chain B		dmsB	
+	1661633	1662487	855	Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-)	peg	gi|49175990|ref|NC_000913.2|_1661633_1662487		DMSO reductase anchor subunit		CDS	DMSO reductase anchor subunit family protein			
+	1662530	1663144	615	Anaerobic dimethyl sulfoxide reductase chaperone DmsD	peg	gi|49175990|ref|NC_000913.2|_1662530_1663144		Uncharacterized component of anaerobic dehydrogenases		CDS	twin-arginine leader-binding protein dmsD		dmsD	
-	1664548	1665243	696	Dethiobiotin synthetase (EC 6.3.3.3)	peg	gi|49175990|ref|NC_000913.2|_1665243_1664548		dethiobiotin synthase (EC 6.3.3.3)	6.3.3.3	CDS	dethiobiotin synthase	6.3.3.3	bioD	
+	1663339	1664595	1257	FIG00509904: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1663339_1664595		Chloride channel protein EriC		CDS	voltage-gated ClC-type chloride channel ClcB		clcB	
-	1665368	1666588	1221	"Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon"	peg	gi|49175990|ref|NC_000913.2|_1666588_1665368		Transcriptional regulator/sugar kinase		CDS	protein mlc		mlc	
-	1666723	1667616	894	LysR family transcriptional regulator YnfL	peg	gi|49175990|ref|NC_000913.2|_1667616_1666723		transcriptional regulator, LysR family		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	1667723	1668976	1254	Permeases of the major facilitator superfamily	peg	gi|49175990|ref|NC_000913.2|_1667723_1668976		Arabinose efflux permease		CDS	inner membrane transport protein ynfM		ynfM	
+	1669373	1669708	336	Acid shock protein precursor	peg	gi|49175990|ref|NC_000913.2|_1669373_1669708		Acid shock protein repeat.		CDS	acid shock repeat family protein			
+	1669984	1670805	822	Putative protease ydgD (EC 3.4.21.-)	peg	gi|49175990|ref|NC_000913.2|_1669984_1670805		V8-like Glu-specific endopeptidase	3.4.21.-	CDS	trypsin family protein			
-	1670844	1671173	330	Spermidine export protein MdtI	peg	gi|49175990|ref|NC_000913.2|_1671173_1670844		Membrane transporters of cations and cationic drugs		CDS	small Multidrug Resistance family protein			
-	1671160	1671525	366	Spermidine export protein MdtJ	peg	gi|49175990|ref|NC_000913.2|_1671525_1671160		Membrane transporters of cations and cationic drugs		CDS	spermidine export protein mdtJ		mdtJ	
+	1671937	1672971	1035	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_1671937_1672971		Predicted permease		CDS	conserved hypothetical protein			
-	1672996	1674384	1389	NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)	peg	gi|49175990|ref|NC_000913.2|_1674384_1672996		NAD/NADP transhydrogenase beta subunit	1.6.1.2	CDS	NAD(P) transhydrogenase subunit beta	1.6.1.2	pntB	
-	1674395	1675981	1587	NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)	peg	gi|49175990|ref|NC_000913.2|_1675981_1674395		NAD(P) transhydrogenase, alpha subunit	1.6.1.2	CDS	NAD(P)(+) transhydrogenase (AB-specific), alpha subunit	1.6.1.2	pntA	
+	1676451	1677395	945	Protein ydgH precursor	peg	gi|49175990|ref|NC_000913.2|_1676451_1677395		Protein of unknown function (DUF1471).		CDS	protein ydgH		ydgH	
+	1677581	1678963	1383	Arginine/ornithine antiporter ArcD	peg	gi|49175990|ref|NC_000913.2|_1677581_1678963		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	putative arginine/ornithine antiporter			
-	1679719	1680054	336	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_1680054_1679719		Uncharacterized membrane protein required for alginate biosynthesis		CDS	inner membrane protein ydgC		ydgC	
+	1679000	1679722	723	FolM Alternative dihydrofolate reductase 1	peg	gi|49175990|ref|NC_000913.2|_1679000_1679722		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.5.1.3, 1.5.1.-	CDS	short chain dehydrogenase family protein			
+	1680183	1680902	720	Transcriptional regulatory protein RstA	peg	gi|49175990|ref|NC_000913.2|_1680183_1680902		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	response regulator			
+	1680906	1682207	1302	Sensory histidine kinase in two-component regulatory system with RstA	peg	gi|49175990|ref|NC_000913.2|_1680906_1682207		Signal transduction histidine kinase	2.7.13.3	CDS	sensor protein rstB	2.7.13.3	rstB	
-	1683209	1684612	1404	Fumarate hydratase class II (EC 4.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_1684612_1683209		fumarase, class II (EC 4.2.1.2)	4.2.1.2	CDS	fumarate hydratase, class II	4.2.1.2	fumC	
+	1682283	1683212	930	DNA replication terminus site-binding protein	peg	gi|49175990|ref|NC_000913.2|_1682283_1683212		DNA replication terminus site binding protein		CDS	DNA replication terminus site-binding protein		tus	
-	1684755	1686401	1647	"Fumarate hydratase class I, aerobic (EC 4.2.1.2)"	peg	gi|49175990|ref|NC_000913.2|_1686401_1684755		fumarase, class I, homodimeric (EC 4.2.1.2)	4.2.1.2	CDS	fumarate hydratase class I, aerobic	4.2.1.2	fumA	
+	1686600	1687775	1176	Mannose-6-phosphate isomerase (EC 5.3.1.8)	peg	gi|49175990|ref|NC_000913.2|_1686600_1687775		mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8)	5.3.1.8	CDS	mannose-6-phosphate isomerase, class I	5.3.1.8	manA	
+	1687876	1689384	1509	Putative GTP-binding protein YdgA	peg	gi|49175990|ref|NC_000913.2|_1687876_1689384		Uncharacterized protein conserved in bacteria		CDS	protein ydgA		ydgA	
-	1689610	1690875	1266	Glucuronide transport facilitator UidC	peg	gi|49175990|ref|NC_000913.2|_1690857_1689610		outer membrane porin, OprD family.		CDS	membrane-associated protein uidC		uidC	
-	1690914	1692287	1374	Glucuronide transporter UidB	peg	gi|49175990|ref|NC_000913.2|_1692287_1690914		sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	conserved hypothetical protein			
-	1692284	1694095	1812	Beta-glucuronidase (EC 3.2.1.31)	peg	gi|49175990|ref|NC_000913.2|_1694095_1692284		Beta-galactosidase/beta-glucuronidase	3.2.1.31	CDS	beta-glucuronidase	3.2.1.31	uidA	
-	1694486	1695076	591	Transcriptional repressor UidR	peg	gi|49175990|ref|NC_000913.2|_1695076_1694486		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
-	1695297	1696064	768	7-alpha-hydroxysteroid dehydrogenase (EC 1.1.1.159)	peg	gi|49175990|ref|NC_000913.2|_1696064_1695297		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.159	CDS	7-alpha-hydroxysteroid dehydrogenase	1.1.1.159	hdhA	
-	1696176	1697204	1029	Maltose regulon regulatory protein MalI (repressor for malXY)	peg	gi|49175990|ref|NC_000913.2|_1697204_1696176		transcriptional regulator, LacI family		CDS	periplasmic binding s and sugar binding domain of LacI family protein			
+	1697379	1698971	1593	"PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_1697379_1698971		PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1)		CDS	PTS system, maltose and glucose-specific subfamily, IIC component domain protein			
+	1698981	1700153	1173	Cystathionine beta-lyase (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase) / Maltose regulon modulator	peg	gi|49175990|ref|NC_000913.2|_1698981_1700153		Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	4.4.1.8	CDS	protein MalY	4.4.1.8	malY	
+	1700257	1701258	1002	Adenosine deaminase (EC 3.5.4.4)	peg	gi|49175990|ref|NC_000913.2|_1700257_1701258		adenosine deaminase	3.5.4.4	CDS	adenosine deaminase	3.5.4.4	add	
-	1701292	1702332	1041	L-arabinose 1-dehydrogenase (EC 1.1.1.46)	peg	gi|49175990|ref|NC_000913.2|_1702332_1701292		Predicted dehydrogenases and related proteins		CDS	conserved hypothetical protein			
+	1702973	1703188	216	Cnu protein	peg	gi|49175990|ref|NC_000913.2|_1702973_1703188		Haemolysin expression modulating protein.		CDS	modulating protein ymoA		ymoA	
+	1703274	1703714	441	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_1703274_1703714		Protein of unknown function (DUF2569).		CDS	inner membrane protein ydgK		ydgK	
+	1703791	1704372	582	Electron transport complex protein RnfA	peg	gi|49175990|ref|NC_000913.2|_1703791_1704372		electron transport complex, RnfABCDGE type, A subunit		CDS	electron transport complex, RnfABCDGE type, A subunit			
+	1704372	1704950	579	Electron transport complex protein RnfB	peg	gi|49175990|ref|NC_000913.2|_1704372_1704950		electron transport complex, RnfABCDGE type, B subunit		CDS	electron transport complex, RnfABCDGE type, B subunit			
+	1704943	1707165	2223	Electron transport complex protein RnfC	peg	gi|49175990|ref|NC_000913.2|_1704943_1707165		electron transport complex, RnfABCDGE type, C subunit		CDS	electron transport complex, RnfABCDGE type, C subunit			
+	1707166	1708224	1059	Electron transport complex protein RnfD	peg	gi|49175990|ref|NC_000913.2|_1707166_1708224		electron transport complex, RnfABCDGE type, D subunit		CDS	electron transport complex, RnfABCDGE type, D subunit			
+	1708228	1708848	621	Electron transport complex protein RnfG	peg	gi|49175990|ref|NC_000913.2|_1708228_1708848		electron transport complex, RnfABCDGE type, G subunit		CDS	electron transport complex, RnfABCDGE type, G subunit			
+	1708852	1709547	696	Electron transport complex protein RnfE	peg	gi|49175990|ref|NC_000913.2|_1708852_1709547		electron transport complex, RnfABCDGE type, E subunit		CDS	electron transport complex, RnfABCDGE type, E subunit			
+	1709547	1710182	636	Endonuclease III (EC 4.2.99.18)	peg	gi|49175990|ref|NC_000913.2|_1709547_1710182		DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-)	4.2.99.18	CDS	endonuclease III	4.2.99.18	nth	
+	1710310	1710510	201				hypothetical protein		CDS				
+	1710793	1712295	1503	Di/tripeptide permease DtpA	peg	gi|49175990|ref|NC_000913.2|_1710793_1712295		amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	H+ symporter) family protein			
+	1712401	1713006	606	Glutathione S-transferase (EC 2.5.1.18)	peg	gi|49175990|ref|NC_000913.2|_1712401_1713006		Glutathione S-transferase	2.5.1.18	CDS	glutathione S-transferase	2.5.1.18	gst	
-	1713050	1713910	861	Pyridoxal kinase (EC 2.7.1.35)	peg	gi|49175990|ref|NC_000913.2|_1713910_1713050		pyridoxal kinase	2.7.1.35	CDS	pyridoxal kinase	2.7.1.35		
-	1713972	1715246	1275	Tyrosyl-tRNA synthetase (EC 6.1.1.1)	peg	gi|49175990|ref|NC_000913.2|_1715246_1713972		tyrosyl-tRNA synthetase (EC 6.1.1.1)	6.1.1.1	CDS	tyrosine--tRNA ligase	6.1.1.1	tyrS	
-	1715375	1716031	657	Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	peg	gi|49175990|ref|NC_000913.2|_1716031_1715375		Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	1.4.3.5	CDS	pyridoxamine 5'-phosphate oxidase	1.4.3.5	pdxH	
-	1716090	1716419	330	Membrane-bound lysozyme inhibitor of c-type lysozyme	peg	gi|49175990|ref|NC_000913.2|_1716419_1716090		Predicted periplasmic protein		CDS	membrane-bound lysozyme inhibitor of C-type lysozyme		mliC	
-	1716517	1717626	1110	Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-)	peg	gi|49175990|ref|NC_000913.2|_1717626_1716517		Predicted molecular chaperone distantly related to HSP70-fold metalloproteases		CDS	anhydro-N-acetylmuramic acid kinase	2.7.1.n1	anmK	
+	1717900	1718367	468	Outer membrane lipoprotein pcp precursor	peg	gi|49175990|ref|NC_000913.2|_1717900_1718367		Outer membrane lipoprotein		CDS	outer membrane lipoprotein slyB		slyB	
-	1718414	1718848	435	Transcriptional regulator SlyA	peg	gi|49175990|ref|NC_000913.2|_1718848_1718414		Transcriptional regulators		CDS	transcriptional regulator slyA		slyA	
+	1719049	1719285	237	FIG00638170: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1719049_1719285		Protein of unknown function (DUF1656).		CDS	conserved hypothetical protein			
+	1719288	1720145	858	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_1719288_1720145		RND family efflux transporter, MFP subunit		CDS	efflux transporter, RND family, MFP subunit			
+	1720145	1722157	2013	FIG00639138: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1720166_1722157		Predicted membrane protein		CDS	fusaric acid resistance family protein			
-	1722158	1722679	522	Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)	peg	gi|49175990|ref|NC_000913.2|_1722679_1722158		Cu/Zn superoxide dismutase	1.15.1.1	CDS	superoxide dismutase [Cu-Zn]	1.15.1.1	sodC	
-	1722760	1723656	897	Putative aldo/keto reductase	peg	gi|49175990|ref|NC_000913.2|_1723656_1722760		Predicted oxidoreductase		CDS	oxidoreductase YdhF	1.-.-.-	ydhF	
-	1723705	1723944	240				Predicted Fe-S protein		CDS				
+	1724047	1724646	600	"Transcriptional regulator, TetR family"	peg	gi|49175990|ref|NC_000913.2|_1724047_1724646		transcriptional regulator, TetR family		CDS	HTH-type transcriptional repressor nemR		nemR	
+	1724683	1725780	1098	N-ethylmaleimide reductase (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_1724683_1725780		NADH:flavin oxidoreductases, Old Yellow Enzyme family	1.-	CDS	N-ethylmaleimide reductase	1.-.-.-	nemA	
+	1725861	1726268	408	Lactoylglutathione lyase (EC 4.4.1.5)	peg	gi|49175990|ref|NC_000913.2|_1725861_1726268		lactoylglutathione lyase	4.4.1.5	CDS	lactoylglutathione lyase	4.4.1.5	gloA	
+	1726371	1727018	648	Ribonuclease T (EC 3.1.13.-)	peg	gi|49175990|ref|NC_000913.2|_1726371_1727018		RNAse T (EC 3.1.13.-)	3.1.13.-	CDS	ribonuclease T	3.1.13.-	rnt	
+	1727111	1731727	4617	Probable ATP-dependent helicase lhr (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_1727111_1731727		ATP dependent helicase, Lhr family	3.6.4.-	CDS	helicase conserved C-terminal domain protein			
-	1731778	1732125	348	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1732125_1731778		monothiol glutaredoxin, Grx4 family		CDS	monothiol glutaredoxin, Grx4 family		grxD	
-	1732207	1732359	153	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1732359_1732207					putative hypothe			
+	1732459	1733274	816	Putative lipoprotein	peg	gi|49175990|ref|NC_000913.2|_1732459_1733274		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	conserved hypothetical protein			
+	1733402	1733983	582	Superoxide dismutase [Fe] (EC 1.15.1.1)	peg	gi|49175990|ref|NC_000913.2|_1733402_1733983		Superoxide dismutase	1.15.1.1	CDS	superoxide dismutase [Fe]	1.15.1.1	sodB	
-	1734145	1735314	1170	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_1735314_1734145		Arabinose efflux permease		CDS	inner membrane transport protein ydhP		ydhP	
-	1736890	1737822	933	LysR-family transcriptional regulator YdhB	peg	gi|49175990|ref|NC_000913.2|_1737822_1736890		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	1735868	1736893	1026	Purine nucleotide synthesis repressor	peg	gi|49175990|ref|NC_000913.2|_1735868_1736893		transcriptional regulator, LacI family		CDS	periplasmic binding s and sugar binding domain of LacI family protein			
+	1737935	1739146	1212	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_1737935_1739146		drug resistance transporter, Bcr/CflA subfamily		CDS	inner membrane transport protein ydhC		ydhC	
+	1739437	1740585	1149	Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	peg	gi|49175990|ref|NC_000913.2|_1739437_1740585		cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79)	2.1.1.79	CDS	cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79	cfa	
-	1740625	1741266	642	Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9)	peg	gi|49175990|ref|NC_000913.2|_1741266_1740625		riboflavin synthase alpha chain (EC 2.5.1.9)	2.5.1.9	CDS	riboflavin synthase, alpha subunit	2.5.1.9	ribE	
+	1741481	1742854	1374	Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM	peg	gi|49175990|ref|NC_000913.2|_1741481_1742854		putative efflux protein, MATE family		CDS	multidrug resistance protein mdtK		mdtK	
-	1742895	1744151	1257	Possible enzyme	peg	gi|49175990|ref|NC_000913.2|_1744151_1742895		Pertactin.		CDS	pertactin family protein			
+	1744724	1745029	306	Protein ydhR precursor	peg	gi|49175990|ref|NC_000913.2|_1744724_1745029		Putative mono-oxygenase ydhR.		CDS	putative monooxygenase ydhR			
+	1745155	1746759	1605	Acyl-CoA dehydrogenases	peg	gi|49175990|ref|NC_000913.2|_1745155_1746759		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1746771	1747583	813	FIG00639295: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1747583_1746771		hypothetical protein		CDS	conserved hypothetical protein			
-	1747587	1748372	786	Thiosulfate reductase cytochrome B subunit	peg	gi|49175990|ref|NC_000913.2|_1748372_1747587		Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)		CDS	prokaryotic cytochrome b561 family protein			
-	1748369	1749037	669	Uncharacterized ferredoxin-like protein YdhX	peg	gi|49175990|ref|NC_000913.2|_1748923_1748369		Fe-S-cluster-containing hydrogenase components 1		CDS	4Fe-4S binding domain protein			
-	1749101	1749739	639	FIG00637966: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1749739_1749101		hypothetical protein		CDS	putative predicted oxidoreductase			
-	1749752	1751854	2103	FIG00638117: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1751854_1749752		Aldehyde:ferredoxin oxidoreductase		CDS	aldehyde ferredoxin oxidoreductase, domains 2 & 3 family protein			
-	1751875	1752501	627	"putative oxidoreductase, Fe-S subunit"	peg	gi|49175990|ref|NC_000913.2|_1752501_1751875		Fe-S-cluster-containing hydrogenase components 1		CDS	conserved hypothetical protein			
-	1752956	1753165	210	FIG01045422: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1753126_1752956		Protein of unknown function (DUF2767).		CDS	conserved hypothetical protein			
+	1753722	1755134	1413	Pyruvate kinase (EC 2.7.1.40)	peg	gi|49175990|ref|NC_000913.2|_1753722_1755134		pyruvate kinase (EC 2.7.1.40)	2.7.1.40	CDS	pyruvate kinase	2.7.1.40	pyk	
+	1755445	1755681	237	major outer membrane lipoprotein	peg	gi|49175990|ref|NC_000913.2|_1755445_1755681		Murein lipoprotein		CDS	major outer membrane lipoprotein Lpp		lpp	
-	1755745	1756749	1005	"L,D-transpeptidase YnhG"	peg	gi|49175990|ref|NC_000913.2|_1756749_1755745		Uncharacterized protein conserved in bacteria		CDS	putative L,D-transpeptidase YnhG			
-	1756898	1757314	417	Sulfur acceptor protein SufE for iron-sulfur cluster assembly	peg	gi|49175990|ref|NC_000913.2|_1757314_1756898		Cysteine desulfuration protein SufE		CDS	cysteine desulfuration protein sufE		sufE	
-	1757327	1758547	1221	"Cysteine desulfurase (EC 2.8.1.7), SufS subfamily; Selenocysteine lyase( EC:4.4.1.16 ) subunit"	peg	gi|49175990|ref|NC_000913.2|_1758547_1757327		cysteine desulfurase (EC 2.8.1.7)/L-selenocysteine selenide-lyase (L-alanine-forming) (EC 4.4.1.16)	4.4.1.16, 2.8.1.7	CDS	cysteine desulfurase	4.4.1.16	sufS	
-	1758544	1759815	1272	Iron-sulfur cluster assembly protein SufD	peg	gi|49175990|ref|NC_000913.2|_1759815_1758544		Iron-regulated ABC transporter permease protein SufD		CDS	feS assembly protein SufD		sufD	
-	1759790	1760536	747	Iron-sulfur cluster assembly ATPase protein SufC	peg	gi|49175990|ref|NC_000913.2|_1760536_1759790		Iron-regulated ABC transporter ATPase subunit SufC		CDS	feS assembly ATPase SufC		sufC	
-	1760546	1762033	1488	Iron-sulfur cluster assembly protein SufB	peg	gi|49175990|ref|NC_000913.2|_1762033_1760546		Iron-regulated ABC transporter membrane component SufB		CDS	feS assembly protein SufB		sufB	
-	1762042	1762410	369	Iron binding protein SufA for iron-sulfur cluster assembly	peg	gi|49175990|ref|NC_000913.2|_1762410_1762042		FeS assembly scaffold SufA		CDS	feS assembly scaffold SufA		sufA	
-	1762958	1763146	189	FIG00639040: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1763146_1762958		hypothetical protein		CDS	conserved hypothetical protein			
-	1763246	1763656	411	FIG002649: ydiI hotdog fold superfamily	peg	gi|49175990|ref|NC_000913.2|_1763656_1763246		uncharacterized domain 1		CDS	esterase YdiI	3.1.-.-	ydiI	
-	1763653	1766709	3057	"Fe-S protein, homolog of lactate dehydrogenase SO1521"	peg	gi|49175990|ref|NC_000913.2|_1766709_1763653		FAD/FMN-containing dehydrogenases		CDS	4Fe-4S dicluster domain protein			
+	1767098	1768210	1113	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_1767098_1768210		Predicted permease		CDS	conserved hypothetical protein			
+	1768639	1768995	357	FIG00638201: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1768639_1768995		Domain of unknown function (DUF1870).		CDS	conserved hypothetical protein			
+	1769095	1770309	1215	Putative transport system permease protein	peg	gi|49175990|ref|NC_000913.2|_1769095_1770309		Sugar phosphate permease		CDS	inner membrane transport protein ydiM		ydiM	
+	1770536	1771801	1266	FIG00638001: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1770536_1771801		Sugar phosphate permease		CDS	inner membrane transport protein ydiN		ydiN	
+	1771813	1772679	867	Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282)	peg	gi|49175990|ref|NC_000913.2|_1771813_1772679		shikimate dehydrogenase (EC 1.1.1.25)	1.1.1.282	CDS	shikimate / quinate 5-dehydrogenase family protein			
+	1772710	1773468	759	3-dehydroquinate dehydratase I (EC 4.2.1.10)	peg	gi|49175990|ref|NC_000913.2|_1772710_1773468		3-dehydroquinate dehydratase (EC 4.2.1.10)	4.2.1.10	CDS	3-dehydroquinate dehydratase	4.2.1.10	aroD	
+	1773611	1775206	1596	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1773611_1775206		propionate CoA-transferase (EC 2.8.3.1)		CDS	conserved hypothetical protein			
+	1775220	1776371	1152	Acyl-CoA dehydrogenase (EC 1.3.99.3)	peg	gi|49175990|ref|NC_000913.2|_1775220_1776371		Acyl-CoA dehydrogenases		CDS	crotonobetainyl-CoA dehydrogenase	1.3.99.-	caiA	
-	1776414	1777325	912	"Transcriptional regulator, AraC family"	peg	gi|49175990|ref|NC_000913.2|_1777325_1776414		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	1777428	1777604	177	FIG00638426: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1777604_1777428		hypothetical protein		CDS	conserved hypothetical protein			
+	1777641	1778405	765	"Electron transfer flavoprotein, beta subunit"	peg	gi|49175990|ref|NC_000913.2|_1777641_1778405		electron transfer flavoprotein beta subunit		CDS	electron transfer flavodomain protein			
+	1778425	1779363	939	"Electron transfer flavoprotein, alpha subunit"	peg	gi|49175990|ref|NC_000913.2|_1778425_1779363		electron transfer flavoprotein alpha subunit apoprotein		CDS	electron transfer flavodomain protein			
+	1779419	1780708	1290	flavoprotein	peg	gi|49175990|ref|NC_000913.2|_1779419_1780708		Dehydrogenases (flavoproteins)	1.5.5.-	CDS	FAD binding domain protein			
+	1780705	1780998	294	Ferredoxin-like protein FixX	peg	gi|49175990|ref|NC_000913.2|_1780705_1780998		Ferredoxin-like protein		CDS	putative ferredoxin			
+	1781055	1782701	1647	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|49175990|ref|NC_000913.2|_1781055_1782701		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	short-chain-fatty-acid--CoA ligase	6.2.1.-	fadK	
-	1782758	1785136	2379	Phosphoenolpyruvate synthase (EC 2.7.9.2)	peg	gi|49175990|ref|NC_000913.2|_1785136_1782758		phosphoenolpyruvate synthase (EC 2.7.9.2)	2.7.9.2	CDS	phosphoenolpyruvate synthase	2.7.9.2	ppsA	
+	1785469	1786302	834	FIG137360: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1785469_1786302		Uncharacterized protein conserved in bacteria		CDS	putative phosphotransferase ydiA			
+	1786459	1787505	1047	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	peg	gi|49175990|ref|NC_000913.2|_1786459_1787505		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		
+	1787637	1787828	192	Hemin uptake protein HemP	peg	gi|49175990|ref|NC_000913.2|_1787637_1787828		Hemin uptake protein		CDS	hemin uptake hemP family protein			
-	1787832	1789268	1437	Selenoprotein O and cysteine-containing homologs	peg	gi|49175990|ref|NC_000913.2|_1789268_1787832		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	1789331	1790044	714	FIG00638687: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1790044_1789331		FOG: EAL domain		CDS	cyclic di-GMP regulator CdgR		cdgR	
-	1790291	1790755	465	Probable lipoprotein nlpC precursor	peg	gi|49175990|ref|NC_000913.2|_1790755_1790291		Cell wall-associated hydrolases (invasion-associated proteins)		CDS	nlpC/P60 family protein			
-	1790833	1791582	750	"Vitamin B12 ABC transporter, ATPase component BtuD"	peg	gi|49175990|ref|NC_000913.2|_1791582_1790833		ABC-type cobalamin transport system, ATPase component	3.6.3.33	CDS	vitamin B12 import ATP-binding protein BtuD	3.6.3.33	btuD	
-	1791582	1792133	552	Glutathione peroxidase (EC 1.11.1.9)	peg	gi|49175990|ref|NC_000913.2|_1792133_1791582		Glutathione peroxidase	1.11.1.9	CDS	glutathione peroxidase family protein			
-	1792196	1793176	981	"Vitamin B12 ABC transporter, permease component BtuC"	peg	gi|49175990|ref|NC_000913.2|_1793176_1792196		ABC-type cobalamin transport system, permease component		CDS	vitamin B12 import system permease protein BtuC		btuC	
-	1793277	1793576	300	Integration host factor alpha subunit	peg	gi|49175990|ref|NC_000913.2|_1793576_1793277		integration host factor, alpha subunit		CDS	integration host factor, alpha subunit		ihfA	
-	1793581	1795968	2388	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	peg	gi|49175990|ref|NC_000913.2|_1795968_1793581		phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20)	6.1.1.20	CDS	phenylalanine--tRNA ligase, beta subunit	6.1.1.20	pheT	
-	1795983	1796966	984	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	peg	gi|49175990|ref|NC_000913.2|_1796966_1795983		phenylalanyl-tRNA synthetase, alpha subunit (EC 6.1.1.20)	6.1.1.20	CDS	phenylalanine--tRNA ligase, alpha subunit	6.1.1.20	pheS	
-	1797417	1797773	357	LSU ribosomal protein L20p	peg	gi|49175990|ref|NC_000913.2|_1797773_1797417		LSU ribosomal protein L20P		CDS	ribosomal protein L20		rplT	
-	1797826	1798023	198	LSU ribosomal protein L35p	peg	gi|49175990|ref|NC_000913.2|_1798023_1797826		LSU ribosomal protein L35P		CDS	ribosomal protein L35		rpmI	
-	1798017	1798359	343										
-	1798120	1798554	435	Translation initiation factor 3	peg	gi|49175990|ref|NC_000913.2|_1798461_1798120		bacterial translation initiation factor 3 (bIF-3)		CDS	translation initiation factor IF-3		infC	
-	1798666	1800594	1929	Threonyl-tRNA synthetase (EC 6.1.1.3)	peg	gi|49175990|ref|NC_000913.2|_1800594_1798666		threonyl-tRNA synthetase	6.1.1.3	CDS	threonine--tRNA ligase	6.1.1.3	thrS	
+	1801118	1801591	474				hypothetical protein		CDS	conserved hypothetical protein			
+	1801602	1803017	1416	FIG00638086: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1801602_1803017		hypothetical protein		CDS	shET2 enterotoxin, N-terminal region family protein			
-	1803349	1804107	759	Putative outer membrane protein	peg	gi|49175990|ref|NC_000913.2|_1804107_1803349		Putative salt-induced outer membrane protein		CDS	conserved hypothetical protein			
+	1804394	1805323	930	6-phosphofructokinase class II (EC 2.7.1.11)	peg	gi|49175990|ref|NC_000913.2|_1804394_1805323		6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	6-phosphofructokinase isozyme 2	2.7.1.11	pfkB	
+	1805424	1805714	291	FIG00637864: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1805424_1805714		Protein of unknown function (DUF2622).		CDS	conserved hypothetical protein			
+	1805820	1806680	861	Ribulosamine/erythrulosamine 3-kinase potentially involved in protein deglycation	peg	gi|49175990|ref|NC_000913.2|_1805820_1806680		Fructosamine-3-kinase		CDS	phosphotransferase enzyme family protein			
-	1806721	1807257	537	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_1807257_1806721		YniB-like protein.		CDS	yniB-like family protein			
+	1807404	1808072	669	2-deoxyglucose-6-phosphate hydrolase YniC	peg	gi|49175990|ref|NC_000913.2|_1807404_1808072		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	phosphatase YniC	3.1.3.-	yniC	
+	1808235	1808825	591	FIG00638530: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1808235_1808825		Predicted membrane-bound metal-dependent hydrolases		CDS	inner membrane protein ydjM		ydjM	
+	1808958	1810349	1392	L-cystine uptake protein TcyP	peg	gi|49175990|ref|NC_000913.2|_1808958_1810349		Predicted Na+/dicarboxylate symporter		CDS	sodium:dicarboxylate symporter family protein			
-	1810353	1811156	804	FIG00638395: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1811156_1810353		hypothetical protein		CDS	conserved hypothetical protein			
-	1811445	1811708	264	Cell division activator cedA	peg	gi|49175990|ref|NC_000913.2|_1811687_1811445		cell division activator CedA		CDS	cell division activator CedA		cedA	
+	1811891	1814152	2262	Catalase (EC 1.11.1.6)	peg	gi|49175990|ref|NC_000913.2|_1811891_1814152		Catalase	1.11.1.6	CDS	catalase HPII	1.11.1.6	katE	
+	1814194	1814358	165	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1814194_1814358								
-	1814410	1815159	750	Cellobiose phosphotransferase system YdjC-like protein	peg	gi|49175990|ref|NC_000913.2|_1815159_1814410		Uncharacterized protein conserved in bacteria		CDS	ydjC-like family protein			
-	1815172	1816524	1353	Chitobiose-specific 6-phospho-beta-glucosidase ChbF (EC 3.2.1.86)	peg	gi|49175990|ref|NC_000913.2|_1816524_1815172		6-phospho-beta-glucosidase (EC 3.2.1.86)	3.2.1.86	CDS	6-phospho-beta-glucosidase	3.2.1.86	chbF	
-	1816629	1817468	840	"Chitobiose-specific regulator ChbR, AraC family"	peg	gi|49175990|ref|NC_000913.2|_1817468_1816629		transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator ChbR		chbR	
-	1817479	1817829	351	PEP-dependent phosphotransferase enzyme III	peg	gi|49175990|ref|NC_000913.2|_1817829_1817479		PTS system N,N'-diacetylchitobiose-specific IIA component, Lac family (TC 4.A.3.2.1)	2.7.1.69	CDS	N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component	2.7.1.-	chbA	
-	1817880	1819238	1359	"PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin"	peg	gi|49175990|ref|NC_000913.2|_1819238_1817880		PTS system N,N'-diacetylchitobiose-specific IIC component, Lac family (TC 4.A.3.2.1)		CDS	PTS system, cellobiose-specific IIC component	2.7.1.69	celB	
-	1819323	1819643	321	"PTS system, chitobiose-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_1819643_1819323		PTS system N,N'-diacetylchitobiose-specific IIB component, Lac family (TC 4.A.3.2.1)	2.7.1.69	CDS	N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component	2.7.1.69	chbB	
-	1819942	1820280	339	Osmotically inducible lipoprotein E precursor	peg	gi|49175990|ref|NC_000913.2|_1820280_1819942		Beta-barrel assembly machine subunit BamE		CDS	smpA / OmlA family protein			
+	1820482	1821309	828	NAD synthetase (EC 6.3.1.5)	peg	gi|49175990|ref|NC_000913.2|_1820482_1821309		NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)	6.3.1.5	CDS	NH(3)-dependent NAD(+) synthetase	6.3.1.5	nadE	
-	1822386	1822961	576	Conserved hypothetical protein (perhaps related to histidine degradation)	peg	gi|49175990|ref|NC_000913.2|_1822961_1822386		Uncharacterized protein conserved in bacteria		CDS	protein ves		ves	
+	1821539	1822426	888	Excinuclease cho (excinuclease ABC alternative C subunit)	peg	gi|49175990|ref|NC_000913.2|_1821677_1822426		Excinuclease Cho	3.1.25.-	CDS	excinuclease cho	3.1.25.-	cho	
-	1823164	1823649	486	Periplasmic protein related to spheroblast formation	peg	gi|49175990|ref|NC_000913.2|_1823649_1823164		P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein		CDS	spheroplast protein Y		spy	
-	1823979	1824947	969	Succinylglutamate desuccinylase (EC 3.5.1.96)	peg	gi|49175990|ref|NC_000913.2|_1824947_1823979		succinylglutamate desuccinylase (EC 3.5.1.96)	3.5.1.96	CDS	succinylglutamate desuccinylase	3.5.1.96	astE	
-	1824940	1826283	1344	Succinylarginine dihydrolase (EC 3.5.3.23)	peg	gi|49175990|ref|NC_000913.2|_1826283_1824940		succinylarginine dihydrolase (EC 3.5.3.23)	3.5.3.23	CDS	succinylarginine dihydrolase	3.5.3.23	astB	
-	1826280	1827758	1479	Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)	peg	gi|49175990|ref|NC_000913.2|_1827758_1826280		succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)	1.2.1.71	CDS	succinylglutamic semialdehyde dehydrogenase	1.2.1.71	astD	
-	1827755	1828789	1035	Arginine N-succinyltransferase (EC 2.3.1.109)	peg	gi|49175990|ref|NC_000913.2|_1828789_1827755		arginine succinyltransferase (EC 2.3.1.109)	2.3.1.109	CDS	arginine N-succinyltransferase	2.3.1.109	astA	
-	1828786	1830006	1221	Succinylornithine transaminase (EC 2.6.1.81)	peg	gi|49175990|ref|NC_000913.2|_1830006_1828786		acetylornithine and succinylornithine transaminases/succinylornithine transaminase family	2.6.1.81	CDS	succinylornithine transaminase family protein	2.6.1.81	astC	
+	1830269	1830439	171	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1830269_1830439					conserved hypothetical protein			
+	1830452	1831258	807	Exodeoxyribonuclease III (EC 3.1.11.2)	peg	gi|49175990|ref|NC_000913.2|_1830452_1831258		exodeoxyribonuclease III	3.1.11.2	CDS	exodeoxyribonuclease III	3.1.11.2	xth	
+	1831425	1832135	711	DedA family inner membrane protein YdjX	peg	gi|49175990|ref|NC_000913.2|_1831425_1832135		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1832140	1832817	678	Hypothetical protein YdjY	peg	gi|49175990|ref|NC_000913.2|_1832140_1832817		hypothetical protein		CDS	conserved hypothetical protein			
+	1832832	1833539	708	Alkaline phosphatase like protein	peg	gi|49175990|ref|NC_000913.2|_1832832_1833539		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1833539	1834087	549	FIG00922551: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1833539_1834087		Uncharacterized conserved protein		CDS	carboxymuconolactone decarboxylase family protein			
+	1834097	1835263	1167	"ABC transporter, periplasmic substrate-binding protein YnjB"	peg	gi|49175990|ref|NC_000913.2|_1834097_1835263		ABC-type uncharacterized transport system, periplasmic component		CDS	protein ynjB		ynjB	
+	1835236	1836771	1536	"ABC transporter, permease protein YnjC"	peg	gi|49175990|ref|NC_000913.2|_1835236_1836771		ABC-type uncharacterized transport system, permease component		CDS	inner membrane ABC transporter permease protein ynjC		ynjC	
+	1836771	1837424	654	"ABC transporter, ATP-binding protein YnjD"	peg	gi|49175990|ref|NC_000913.2|_1836771_1837424		ABC-type uncharacterized transport system, ATPase component		CDS	ABC transporter family protein			
+	1837491	1838798	1308	Putative thiosulfate sulfurtransferase ynjE (EC 2.8.1.1)	peg	gi|49175990|ref|NC_000913.2|_1837491_1838798		thiosulfate sulfurtransferase (EC 2.8.1.1)	2.8.1.1, 2.8.1.2	CDS	thiosulfate sulfurtransferase YnjE	2.8.1.1	ynjE	
-	1838807	1839427	621	Putative phosphatidylglycerophosphate synthase	peg	gi|49175990|ref|NC_000913.2|_1839427_1838807		Phosphatidylglycerophosphate synthase		CDS	inner membrane protein YnjF		ynjF	
-	1839887	1840159	273	FIG00638396: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1840159_1839887		Protein of unknown function (DUF1496).		CDS	conserved hypothetical protein			
+	1839514	1839921	408	5-methyl-dCTP pyrophosphohydrolase (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_1839514_1839921		ADP-ribose pyrophosphatase	3.6.1.-	CDS	CTP pyrophosphohydrolase	3.6.1.-	nudG	
+	1840395	1841738	1344	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	peg	gi|49175990|ref|NC_000913.2|_1840395_1841738		glutamate dehydrogenase (NADP) (EC 1.4.1.4)	1.4.1.4	CDS	NADP-specific glutamate dehydrogenase	1.4.1.4	gdhA	
-	1841855	1842895	1041	FIG00638567: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1842895_1841855		Protein of unknown function (DUF1266).		CDS	inner membrane protein ynjI		ynjI	
-	1843023	1844984	1962	DNA topoisomerase III (EC 5.99.1.2)	peg	gi|49175990|ref|NC_000913.2|_1844984_1843023		DNA topoisomerase III, bacteria and conjugative plasmid	5.99.1.2	CDS	DNA topoisomerase 3	5.99.1.2	topB	
-	1844989	1846032	1044	"Selenide,water dikinase (EC 2.7.9.3)"	peg	gi|49175990|ref|NC_000913.2|_1846032_1844989		selenophosphate synthase (EC 2.7.9.3)	2.7.9.3	CDS	selenide, water dikinase	2.7.9.3	selD	
-	1846149	1846700	552	Protein ydjA	peg	gi|49175990|ref|NC_000913.2|_1846700_1846149		Nitroreductase		CDS	putative NAD(P)H nitroreductase ydjA			
+	1846861	1848717	1857	Protease IV (EC 3.4.21.-)	peg	gi|49175990|ref|NC_000913.2|_1846861_1848717		signal peptide peptidase SppA, 67K type	3.4.21.-	CDS	signal peptide peptidase SppA, 67K type	3.4.-.-	sppA	
+	1848884	1849900	1017	"L-asparaginase I, cytoplasmic (EC 3.5.1.1)"	peg	gi|49175990|ref|NC_000913.2|_1848932_1849900		L-asparaginases, type I	3.5.1.1	CDS	L-asparaginase 1	3.5.1.1	ansA	
+	1849911	1850552	642	Nicotinamidase (EC 3.5.1.19)	peg	gi|49175990|ref|NC_000913.2|_1849911_1850552		Amidases related to nicotinamidase	3.5.1.19, 3.5.1.-	CDS	isochorismatase family protein			
-	1850645	1852003	1359	"Putative transport protein YdjK, MFS superfamily"	peg	gi|49175990|ref|NC_000913.2|_1852003_1850645		Sugar phosphate permease		CDS	inner membrane metabolite transport protein ydjE		ydjE	
-	1852120	1852878	759	Putative HTH-type transcriptional regulator YdjF	peg	gi|49175990|ref|NC_000913.2|_1852878_1852120		transcriptional regulator, DeoR family		CDS	conserved hypothetical protein			
-	1853015	1853995	981	Hypothetical oxidoreductase YdjG (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_1853995_1853015		Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	aldo/keto reductase family protein			
-	1854005	1854952	948	Uncharacterized sugar kinase YdjH	peg	gi|49175990|ref|NC_000913.2|_1854952_1854005		Sugar kinases, ribokinase family		CDS	conserved hypothetical protein			
-	1854957	1855793	837	Putative aldolase YdjI	peg	gi|49175990|ref|NC_000913.2|_1855793_1854957		fructose-bisphosphate aldolase (EC 4.1.2.13)		CDS	ketose-bisphosphate aldolase family protein			
-	1855814	1856857	1044	Hypothetical zinc-type alcohol dehydrogenase-like protein YdjJ	peg	gi|49175990|ref|NC_000913.2|_1856857_1855814		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	sorbitol dehydrogenase	1.1.1.14	gutB	
-	1856874	1858253	1380	"Putative transport protein YdjK, MFS superfamily"	peg	gi|49175990|ref|NC_000913.2|_1858253_1856874		Sugar phosphate permease		CDS	inner membrane metabolite transport protein ydjE		ydjE	
-	1858280	1859356	1077	Putative oxidoreductase YdjL	peg	gi|49175990|ref|NC_000913.2|_1859356_1858280		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	zinc-binding dehydrogenase family protein			
-	1859726	1859998	273	Uncharacterized protein YeaC	peg	gi|49175990|ref|NC_000913.2|_1859998_1859726		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1860040	1860453	414	Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12)	peg	gi|49175990|ref|NC_000913.2|_1860453_1860040		methionine-R-sulfoxide reductase	1.8.4.12	CDS	peptide methionine sulfoxide reductase MsrB	1.8.4.12	msrB	
+	1860795	1861790	996	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)	peg	gi|49175990|ref|NC_000913.2|_1860795_1861790		glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12)	1.2.1.12	CDS	glyceraldehyde-3-phosphate dehydrogenase, type I	1.2.1.-	gap	
+	1861874	1862758	885	Aldose 1-epimerase family protein YeaD	peg	gi|49175990|ref|NC_000913.2|_1861874_1862758		Uncharacterized enzymes related to aldose 1-epimerase	5.1.3.15	CDS	putative glucose-6-phosphate 1-epimerase			
-	1862806	1863660	855	"Putative oxidoreductase YeaE, aldo/keto reductase family"	peg	gi|49175990|ref|NC_000913.2|_1863660_1862806		Aldo/keto reductases, related to diketogulonate reductase		CDS	aldo/keto reductase family protein			
-	1863750	1864496	747	MltA-interacting protein MipA	peg	gi|49175990|ref|NC_000913.2|_1864496_1863750		Outer membrane protein V		CDS	mltA-interacting protein		mipA	
+	1864932	1866866	1935	"Serine protein kinase (prkA protein), P-loop containing"	peg	gi|49175990|ref|NC_000913.2|_1864932_1866866		putative serine protein kinase, PrkA		CDS	prkA serine kinase C-terminal domain protein			
+	1866979	1868262	1284	UPF0229 protein YeaH	peg	gi|49175990|ref|NC_000913.2|_1866979_1868262		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1868409	1869884	1476	Inner membrane protein YeaI	peg	gi|49175990|ref|NC_000913.2|_1868550_1869884		diguanylate cyclase (GGDEF) domain		CDS	inner membrane protein YeaI		yeaI	
+	1870065	1871555	1491	Putative two-component response regulator and GGDEF family protein YeaJ	peg	gi|49175990|ref|NC_000913.2|_1870065_1871555		diguanylate cyclase (GGDEF) domain		CDS	diguanylate cyclase domain protein			
+	1871598	1872101	504	Putative uncharacterized protein YeaK	peg	gi|49175990|ref|NC_000913.2|_1871598_1872101		Uncharacterized conserved protein		CDS	ybaK / prolyl-tRNA synthetases associated domain protein			
-	1872779	1873597	819	"Transcriptional regulator, AraC family"	peg	gi|49175990|ref|NC_000913.2|_1873588_1872779		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
+	1872376	1872822	447	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_1872376_1872822		Predicted membrane protein		CDS	conserved hypothetical protein			
+	1873697	1874878	1182	FIG00638318: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1873697_1874878		cyanate transporter		CDS	cyanate transporter family protein			
+	1874933	1875280	348	FIG00638254: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1874933_1875280		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	1875302	1875556	255	FIG00638802: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1875556_1875302		Putative hemolysin		CDS	conserved hypothetical protein			
+	1875610	1876764	1155	FIG00638308: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1875610_1876764		diguanylate cyclase with GAF sensor	2.7.7.65	CDS	putative diguanylate cyclase YeaP			
-	1877031	1877279	249	UPF0410 protein YeaQ	peg	gi|49175990|ref|NC_000913.2|_1877279_1877031		Predicted membrane protein		CDS	transglycosylase associated family protein			
-	1877427	1877609	183	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_1877609_1877427		Domain of unknown function (DUF1869).		CDS	protein yoaG		yoaG	
-	1877613	1877972	360	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_1877972_1877613		Uncharacterized protein/domain, possibly involved in tellurite resistance		CDS	conserved hypothetical protein			
-	1878145	1878783	639	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_1878783_1878145		Putative threonine efflux protein		CDS	leucine efflux protein		leuE	
-	1878910	1879833	924	Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme	peg	gi|49175990|ref|NC_000913.2|_1879833_1878910		transcriptional regulator, LysR family		CDS	HTH-type transcriptional regulator DmlR		dmlR	
+	1879936	1881021	1086	Tartrate dehydrogenase (EC 1.1.1.93) / Tartrate decarboxylase (EC 4.1.1.73) / D-malic enzyme (EC 1.1.1.83)	peg	gi|49175990|ref|NC_000913.2|_1879936_1881021		tartrate dehydrogenase	1.1.1.83, 4.1.1.73, 1.1.1.93	CDS	tartrate dehydrogenase	1.1.1.93		
+	1881218	1882657	1440	Choline-glycine betaine transporter	peg	gi|49175990|ref|NC_000913.2|_1881218_1882657		choline/carnitine/betaine transport		CDS	transporter, betaine/carnitine/choline transporter family protein			
+	1882689	1883813	1125	Rieske (2Fe-2S) domain protein	peg	gi|49175990|ref|NC_000913.2|_1882689_1883813		Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit		CDS	rieske [2Fe-2S] domain protein			
+	1883869	1884834	966	ferredoxin	peg	gi|49175990|ref|NC_000913.2|_1883869_1884834		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	2Fe-2S iron-sulfur cluster binding domain protein			
-	1884888	1886015	1128	Ribonuclease D (EC 3.1.26.3)	peg	gi|49175990|ref|NC_000913.2|_1886015_1884888		ribonuclease D	3.1.13.5	CDS	ribonuclease D	3.1.13.5	rnd	
-	1886085	1887770	1686	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	peg	gi|49175990|ref|NC_000913.2|_1887770_1886085					long-chain-fatty-acid--CoA ligase	6.2.1.3	fadD	
-	1887975	1888556	582	Starvation lipoprotein Slp paralog	peg	gi|49175990|ref|NC_000913.2|_1888556_1887975		outer membrane lipoprotein, Slp family		CDS	outer membrane lipo, Slp family protein			
-	1888596	1889291	696	"Inactive homolog of metal-dependent proteases, putative molecular chaperone"	peg	gi|49175990|ref|NC_000913.2|_1889291_1888596		universal bacterial protein YeaZ		CDS	conserved hypothetical protein			
-	1889349	1891259	1911	DinG family ATP-dependent helicase YoaA	peg	gi|49175990|ref|NC_000913.2|_1891259_1889349		Rad3-related DNA helicases		CDS	DEAD/DEAH box helicase family protein			
+	1891388	1891735	348	Putative translation initiation inhibitor YoaB	peg	gi|49175990|ref|NC_000913.2|_1891391_1891735		Putative translation initiation inhibitor, yjgF family		CDS	endoribonuclease L-PSP family protein			
+	1892157	1892456	300	FIG00639292: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1892157_1892456		Domain of unknown function (DUF1889).		CDS	putative cytoplasmic protein			
-	1892576	1892755	180	FIG01046632: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1892755_1892576		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	1892829	1894190	1362	"Para-aminobenzoate synthase, aminase component (EC 2.6.1.85)"	peg	gi|49175990|ref|NC_000913.2|_1892829_1894190		aminodeoxychorismate synthase, subunit I (EC 2.6.1.85)	2.6.1.85	CDS	aminodeoxychorismate synthase, component I	2.6.1.85	pabB	
+	1894194	1894772	579	Hypothetical nudix hydrolase YeaB	peg	gi|49175990|ref|NC_000913.2|_1894194_1894772		NTP pyrophosphohydrolases including oxidative damage repair enzymes		CDS	NUDIX domain protein			
+	1894956	1896320	1365	L-serine dehydratase 1 (EC 4.3.1.17)	peg	gi|49175990|ref|NC_000913.2|_1895022_1896320		L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17	CDS	L-serine ammonia-lyase	4.3.1.17		
+	1896451	1898049	1599	Rtn protein	peg	gi|49175990|ref|NC_000913.2|_1896451_1898049		FOG: EAL domain		CDS	putative cyclic-di-GMP phosphodiesterase AdrB			
-	1898053	1899609	1557	Magnesium and cobalt efflux protein CorC	peg	gi|49175990|ref|NC_000913.2|_1899609_1898053		Membrane protein TerC, possibly involved in tellurium resistance		CDS	conserved hypothetical protein			
+	1900072	1901043	972	"PTS system, mannose-specific IIA component (EC 2.7.1.69) / PTS system, mannose-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_1900072_1901043		PTS system D-mannose-specific IIA component, Man family (TC 4.A.6.1.1)/PTS system D-mannose-specific IIB component, Man family (TC 4.A.6.1.1)	2.7.1.69	CDS	PTS system mannose-specific EIIAB component	2.7.1.69	manX	
+	1901106	1901906	801	"PTS system, mannose-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_1901106_1901906		PTS system D-mannose-specific IIC component, Man family (TC 4.A.6.1.1)		CDS	PTS system, mannose/fructose/sorbose , IIC component family protein			
+	1901919	1902770	852	"PTS system, mannose-specific IID component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_1901919_1902770		PTS system D-mannose-specific IID component, Man family (TC 4.A.6.1.1)		CDS	PTS system, mannose/fructose/sorbose , IID component family protein			
-	1902822	1903019	198	FIG00639732: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1903019_1902822								
+	1902825	1903283	459	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1903062_1903283		Predicted membrane protein		CDS	conserved hypothetical protein			
-	1904275	1905084	810	Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51)	peg	gi|49175990|ref|NC_000913.2|_1905084_1904275		23S rRNA m(1)G-745 methyltransferase (EC 2.1.1.51)	2.1.1.187	CDS	ribosomal RNA large subunit methyltransferase A	2.1.1.187	rlmA	
+	1903712	1904278	567	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_1903712_1904278		Predicted membrane protein		CDS	conserved hypothetical protein			
-	1905209	1905634	426										
-	1905250	1905459	210	Cold shock protein CspC	peg	gi|49175990|ref|NC_000913.2|_1905459_1905250		cold-shock DNA-binding protein family		CDS	cold shock-like protein CspC		cspC	
-	1906285	1906572	288	FIG01068233: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1906572_1906285		YebO-like protein.		CDS	yebO-like family protein			
+	1906949	1907188	240	putative exported protein	peg	gi|49175990|ref|NC_000913.2|_1906949_1907188		YobH-like protein.		CDS	yobH-like family protein			
-	1907332	1908123	792	"Transcriptional regulator KdgR, KDG operon repressor"	peg	gi|49175990|ref|NC_000913.2|_1908123_1907332		transcriptional regulator, IclR family		CDS	pectin degradation repressor protein kdgR		kdgR	
+	1908300	1909673	1374	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_1908300_1909673		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
-	1909719	1910600	882	Probable protease HtpX (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_1910600_1909719		Zn-dependent protease with chaperone function	3.4.24.-	CDS	protease HtpX	3.4.24.-	htpX	
-	1910792	1912840	2049	Tail-specific protease precursor (EC 3.4.21.102)	peg	gi|49175990|ref|NC_000913.2|_1912834_1910792		C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A	3.4.21.102	CDS	tail-specific protease	3.4.21.102	prc	
-	1912860	1913558	699	ProQ: influences osmotic activation of compatible solute ProP	peg	gi|49175990|ref|NC_000913.2|_1913558_1912860		Activator of osmoprotectant transporter ProP		CDS	proP effector		proQ	
-	1913655	1914206	552	"Free methionine-(R)-sulfoxide reductase, contains GAF domain"	peg	gi|49175990|ref|NC_000913.2|_1914152_1913655		GAF domain-containing protein		CDS	protein yebR		yebR	
+	1914282	1915565	1284	Paraquat-inducible protein A	peg	gi|49175990|ref|NC_000913.2|_1914327_1915565		integral membrane protein, PqiA family		CDS	inner membrane protein yebS		yebS	
+	1915528	1918167	2640	Paraquat-inducible protein B	peg	gi|49175990|ref|NC_000913.2|_1915528_1918167		Paraquat-inducible protein B		CDS	conserved hypothetical protein			
+	1918241	1919686	1446	Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_1918247_1919686		16S rRNA m(5)C-1407 methyltransferase (EC 2.1.1.178)	2.1.1.178	CDS	ribosomal RNA small subunit methyltransferase F	2.1.1.178	rsmF	
+	1919804	1920040	237	FIG01045311: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1919804_1920040		Protein of unknown function (DUF1480).		CDS	conserved hypothetical protein			
+	1920061	1920336	276	FIG00638765: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1920145_1920336		Protein of unknown function (DUF1482).		CDS	conserved hypothetical protein			
-	1920337	1920993	657	Ren protein	peg	gi|49175990|ref|NC_000913.2|_1920993_1920337		Diadenosine tetraphosphatase and related serine/threonine protein phosphatases	3.1.3.16	CDS	serine/threonine-protein phosphatase 1	3.1.3.16	pphA	
-	1921389	1921730	342	Putative periplasmic or exported protein	peg	gi|49175990|ref|NC_000913.2|_1921730_1921389		Protein of unknown function (DUF2511).		CDS	conserved hypothetical protein			
-	1921743	1922615	873	Copper resistance protein D	peg	gi|49175990|ref|NC_000913.2|_1922615_1921743		Putative copper export protein		CDS	inner membrane protein YebZ		yebZ	
-	1922619	1922993	375	Copper resistance protein C precursor	peg	gi|49175990|ref|NC_000913.2|_1922993_1922619		Uncharacterized protein, homolog of Cu resistance protein CopC		CDS	protein YobA		yobA	
+	1923132	1923362	231	DNA polymerase III theta subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_1923132_1923362		DNA polymerase III, theta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III subunit theta	2.7.7.7	holE	
+	1923464	1924120	657	Putative amidohydrolase	peg	gi|49175990|ref|NC_000913.2|_1923464_1924120		Predicted amidohydrolase		CDS	carbon-nitrogen hydrolase family protein			
-	1924803	1926863	2061	Protease II (EC 3.4.21.83)	peg	gi|49175990|ref|NC_000913.2|_1926863_1924803		oligopeptidase B (EC:3.4.21.83). Serine peptidase. MEROPS family S09A	3.4.21.83	CDS	protease 2	3.4.21.83	ptrB	
+	1924144	1924806	663	Exodeoxyribonuclease X (EC 3.1.11.-)	peg	gi|49175990|ref|NC_000913.2|_1924144_1924806		Exodeoxyribonuclease X (EC 3.1.11.-)	3.1.11.-	CDS	exodeoxyribonuclease 10	3.1.11.-	exoX	
-	1927072	1927731	660	FIG004088: inner membrane protein YebE	peg	gi|49175990|ref|NC_000913.2|_1927731_1927072		Uncharacterized protein conserved in bacteria		CDS	inner membrane protein yebE		yebE	
-	1928058	1928414	357	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_1928414_1928058		YebF-like protein.		CDS	protein yebF		yebF	
-	1928481	1928771	291	"DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS"	peg	gi|49175990|ref|NC_000913.2|_1928771_1928481		Uncharacterized protein conserved in bacteria		CDS	yebG family protein			
+	1928905	1930083	1179	Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)	peg	gi|49175990|ref|NC_000913.2|_1928905_1930083		formate-dependent phosphoribosylglycinamide formyltransferase (EC 6.3.4.-)	2.1.2.2	CDS	phosphoribosylglycinamide formyltransferase 2	2.1.2.-	purT	
-	1930139	1930780	642	4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	peg	gi|49175990|ref|NC_000913.2|_1930780_1930139		2-keto-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14)	4.1.2.14, 4.1.3.16	CDS	KHG/KDPG aldolase	4.1.2.14	eda	
-	1930817	1932628	1812	Phosphogluconate dehydratase (EC 4.2.1.12)	peg	gi|49175990|ref|NC_000913.2|_1932628_1930817		6-phosphogluconate dehydratase (EC 4.2.1.12)	4.2.1.12	CDS	phosphogluconate dehydratase	4.2.1.12	edd	
-	1932863	1934338	1476	Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	peg	gi|49175990|ref|NC_000913.2|_1934338_1932863		glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	1.1.1.49	CDS	glucose-6-phosphate dehydrogenase	1.1.1.49	zwf	
+	1934676	1935545	870	"Phosphogluconate repressor HexR, RpiR family"	peg	gi|49175990|ref|NC_000913.2|_1934676_1935545		transcriptional regulator, RpiR family		CDS	helix-turn-helix domain, rpiR family protein			
+	1935673	1937115	1443	Pyruvate kinase (EC 2.7.1.40)	peg	gi|49175990|ref|NC_000913.2|_1935673_1937115		pyruvate kinase	2.7.1.40	CDS	pyruvate kinase	2.7.1.40	pyk	
-	1937246	1938217	972	Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_1938217_1937246		lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	2.3.1.-	CDS	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	2.3.1.-	msbB	
-	1938337	1939659	1323	"Cell wall endopeptidase, family M23/M37"	peg	gi|49175990|ref|NC_000913.2|_1939659_1938337		Membrane proteins related to metalloendopeptidases		CDS	lysM domain protein			
-	1939675	1940733	1059	"Zinc ABC transporter, periplasmic-binding protein ZnuA"	peg	gi|49175990|ref|NC_000913.2|_1940733_1939675		ABC-type Zn2+ transport system, periplasmic component/surface adhesin		CDS	high-affinity zinc uptake system protein znuA		znuA	
+	1940686	1941441	756	"Zinc ABC transporter, ATP-binding protein ZnuC"	peg	gi|49175990|ref|NC_000913.2|_1940686_1941441		ABC-type Mn/Zn transport systems, ATPase component	3.6.3.-	CDS	ABC transporter family protein			
+	1941438	1942223	786	"Zinc ABC transporter, inner membrane permease protein ZnuB"	peg	gi|49175990|ref|NC_000913.2|_1941438_1942223		ABC-type Mn2+/Zn2+ transport systems, permease components		CDS	high-affinity zinc uptake system membrane protein znuB		znuB	
-	1942370	1943380	1011	Holliday junction DNA helicase RuvB	peg	gi|49175990|ref|NC_000913.2|_1943380_1942370		Holliday junction DNA helicase subunit RuvB	3.6.4.12	CDS	holliday junction DNA helicase RuvB	3.6.4.12	ruvB	
-	1943389	1944000	612	Holliday junction DNA helicase RuvA	peg	gi|49175990|ref|NC_000913.2|_1944000_1943389		Holliday junction DNA helicase subunit RuvA	3.6.4.12	CDS	holliday junction DNA helicase RuvA	3.6.4.12	ruvA	
+	1944275	1944877	603	FIG00637868: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1944275_1944877		Orthopoxvirus protein of unknown function (DUF830).		CDS	conserved hypothetical protein			
-	1944879	1945400	522	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)	peg	gi|49175990|ref|NC_000913.2|_1945400_1944879		Holliday junction endonuclease RuvC (EC 3.1.22.4)	3.1.22.4	CDS	crossover junction endodeoxyribonuclease RuvC	3.1.22.4	ruvC	
-	1945435	1946175	741	FIG000859: hypothetical protein YebC	peg	gi|49175990|ref|NC_000913.2|_1946175_1945435		DNA-binding regulatory protein, YebC/PmpR family		CDS	DNA-binding regulatory , YebC/PmpR family protein			
-	1946204	1946713	510	Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB)	peg	gi|49175990|ref|NC_000913.2|_1946587_1946204		NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-	CDS	dihydroneopterin triphosphate pyrophosphatase	3.6.1.-	nudB	
-	1946774	1948546	1773	Aspartyl-tRNA synthetase (EC 6.1.1.12)	peg	gi|49175990|ref|NC_000913.2|_1948495_1946774		aspartyl-tRNA synthetase, bacterial type	6.1.1.12	CDS	aspartate--tRNA ligase	6.1.1.-	aspS	
+	1948856	1949422	567	Nicotinamidase/isochorismatase family protein	peg	gi|49175990|ref|NC_000913.2|_1948856_1949422		Amidases related to nicotinamidase		CDS	isochorismatase family protein			
+	1949419	1950237	819	FIG003003: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1949419_1950237		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	1950290	1950685	396	FIG01046209: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1950290_1950685		Uncharacterized relative of glutathione S-transferase, MAPEG superfamily		CDS	inner membrane protein yecN		yecN	
+	1950726	1951469	744	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	peg	gi|49175990|ref|NC_000913.2|_1950726_1951469		methyltransferase, putative	2.1.1.-	CDS	tRNA (cmo5U34)-methyltransferase	2.1.1.-	cmoA	
+	1951466	1952437	972	tRNA (5-methoxyuridine) 34 synthase	peg	gi|49175990|ref|NC_000913.2|_1951466_1952437		methyltransferase, putative	2.1.1.-	CDS	tRNA (mo5U34)-methyltransferase	2.1.1.-	cmoB	
-	1952602	1955031	2430	Trimethylamine-N-oxide reductase (EC 1.6.6.9)	peg	gi|49175990|ref|NC_000913.2|_1955031_1952602		molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.7.2.3	CDS	trimethylamine-N-oxide reductase 2	1.7.2.3	torZ	
-	1955056	1956156	1101	Cytochrome c-type protein TorY	peg	gi|49175990|ref|NC_000913.2|_1956156_1955056		Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit		CDS	cytochrome c-type protein TorY		torY	
-	1956544	1957290	747	Cytoplasmic copper homeostasis protein CutC	peg	gi|49175990|ref|NC_000913.2|_1957290_1956544		Uncharacterized protein involved in copper resistance		CDS	copper homeostasis protein CutC		cutC	
-	1957304	1957876	573	Protein yecM	peg	gi|49175990|ref|NC_000913.2|_1957876_1957304		Uncharacterized protein conserved in bacteria		CDS	protein yecM		yecM	
+	1958086	1959819	1734	Arginyl-tRNA synthetase (EC 6.1.1.19)	peg	gi|49175990|ref|NC_000913.2|_1958086_1959819		arginyl-tRNA synthetase (EC 6.1.1.19)	6.1.1.19	CDS	arginine--tRNA ligase	6.1.1.19	argS	
+	1959996	1960484	489	FIG00639719: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1959996_1960484		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	1960604	1960996	393	Flagellar protein FlhE	peg	gi|49175990|ref|NC_000913.2|_1960840_1960604		Flagellar protein FlhE.		CDS	flagellar protein flhE		flhE	
-	1960996	1963074	2079	Flagellar biosynthesis protein FlhA	peg	gi|49175990|ref|NC_000913.2|_1963074_1960996		flagellar biosynthesis protein FlhA		CDS	flagellar biosynthesis protein FlhA		flhA	
-	1963067	1964215	1149	Flagellar biosynthesis protein FlhB	peg	gi|49175990|ref|NC_000913.2|_1964215_1963067		flagellar biosynthetic protein FlhB		CDS	flagellar biosynthetic protein FlhB		flhB	
-	1964417	1965061	645	Chemotaxis response - phosphatase CheZ	peg	gi|49175990|ref|NC_000913.2|_1965061_1964417		Chemotaxis protein		CDS	protein phosphatase CheZ	3.1.3.-	cheZ	
-	1965072	1965461	390	Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	peg	gi|49175990|ref|NC_000913.2|_1965461_1965072		Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	chemotaxis protein CheY		cheY	
-	1965476	1966525	1050	Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)	peg	gi|49175990|ref|NC_000913.2|_1966525_1965476		Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	3.1.1.61	CDS	cheB methylesterase family protein			
-	1966528	1967388	861	Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)	peg	gi|49175990|ref|NC_000913.2|_1967388_1966528		Methylase of chemotaxis methyl-accepting proteins	2.1.1.80	CDS	chemotaxis protein methyltransferase	2.1.1.80	cheR	
-	1967407	1969008	1602	Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein)	peg	gi|49175990|ref|NC_000913.2|_1969008_1967407		methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	methyl-accepting chemotaxis protein IV		tap	
-	1969054	1970715	1662	Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein)	peg	gi|49175990|ref|NC_000913.2|_1970715_1969054		methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	methyl-accepting chemotaxis protein II		tar	
-	1970860	1971363	504	Positive regulator of CheA protein activity (CheW)	peg	gi|49175990|ref|NC_000913.2|_1971363_1970860		Chemotaxis signal transduction protein		CDS	cheW-like domain protein			
-	1971384	1973348	1965	Signal transduction histidine kinase CheA (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_1973342_1971384		CheA signal transduction histidine kinase	2.7.13.3	CDS	chemotaxis protein CheA	2.7.13.3	cheA	
-	1973353	1974279	927	Flagellar motor rotation protein MotB	peg	gi|49175990|ref|NC_000913.2|_1974279_1973353		Flagellar motor protein		CDS	motility protein B		motB	
-	1974276	1975163	888	Flagellar motor rotation protein MotA	peg	gi|49175990|ref|NC_000913.2|_1975163_1974276		flagellar motor stator protein MotA		CDS	flagellar motor stator protein MotA		motA	
-	1975290	1975868	579	Flagellar transcriptional activator FlhC	peg	gi|49175990|ref|NC_000913.2|_1975868_1975290		Flagellar transcriptional activator (FlhC).		CDS	flagellar transcriptional regulator FlhC		flhC	
-	1975871	1976221	351	Flagellar transcriptional activator FlhD	peg	gi|49175990|ref|NC_000913.2|_1976221_1975871		Flagellar transcriptional activator (FlhD).		CDS	flagellar transcriptional activator family protein			
-	1976542	1977045	504	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_1977045_1976542		Transposase and inactivated derivatives, IS1 family		CDS	putative transposase			
-	1976964	1977239	276				Transposase and inactivated derivatives		CDS				
+	1977777	1978205	429	Universal stress protein C	peg	gi|49175990|ref|NC_000913.2|_1977777_1978205		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress family protein			
-	1978212	1979636	1425	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15)"	peg	gi|49175990|ref|NC_000913.2|_1979636_1978212		trehalose 6-phosphate synthase (EC 2.4.1.15)	2.4.1.15	CDS	alpha,alpha-trehalose-phosphate synthase	2.4.1.15	otsA	
-	1979611	1980411	801	Trehalose-6-phosphate phosphatase (EC 3.1.3.12)	peg	gi|49175990|ref|NC_000913.2|_1980411_1979611		trehalose 6-phosphatase (EC 3.1.3.12)	3.1.3.12	CDS	trehalose-phosphatase	3.1.3.12	otsB	
-	1980578	1981564	987	L-arabinose transport system permease protein (TC 3.A.1.2.2)	peg	gi|49175990|ref|NC_000913.2|_1981564_1980578		L-arabinose ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
-	1981579	1983093	1515	L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2)	peg	gi|49175990|ref|NC_000913.2|_1983093_1981579		L-arabinose ABC transporter ATP-binding protein	3.6.3.17	CDS	arabinose import ATP-binding protein AraG	3.6.3.17	araG	
-	1983163	1984152	990	L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	peg	gi|49175990|ref|NC_000913.2|_1984152_1983163		L-arabinose-binding protein		CDS	periplasmic binding s and sugar binding domain of LacI family protein			
+	1984949	1985452	504	Ferritin-like protein 2	peg	gi|49175990|ref|NC_000913.2|_1984949_1985452		Ferritin-like protein		CDS	ferritin-like domain protein			
-	1985531	1985782	252	FIG00510289: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1985782_1985531		Protein of unknown function (DUF2766).		CDS	conserved hypothetical protein			
+	1986246	1986569	324	FIG00638267: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1986315_1986569		YecR-like lipoprotein.		CDS				
+	1986740	1987237	498	Ferritin-like protein 2	peg	gi|49175990|ref|NC_000913.2|_1986740_1987237		Ferritin-like protein	1.16.3.1	CDS	ferritin-1	1.16.3.1	ftnA	
-	1987275	1987514	240	FIG01045661: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1987514_1987275		probable metal-binding protein		CDS	conserved hypothetical protein			
+	1987705	1988916	1212	Tyrosine-specific transport protein	peg	gi|49175990|ref|NC_000913.2|_1987774_1988916		aromatic amino acid transport protein		CDS	tyrosine-specific transport protein		tyrP	
-	1988978	1989643	666	FIG00637942: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1989643_1988978		yecA family protein		CDS	yecA family protein			
-	1990293	1990841	549	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	peg	gi|49175990|ref|NC_000913.2|_1990841_1990293		CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	2.7.8.5	CDS	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5	pgsA	
-	1990898	1992730	1833	Excinuclease ABC subunit C	peg	gi|49175990|ref|NC_000913.2|_1992730_1990898		Excinuclease ABC subunit C		CDS	excinuclease ABC subunit C	3.1.25.-	uvrC	
-	1992727	1993383	657	BarA-associated response regulator UvrY (= GacA = SirA)	peg	gi|49175990|ref|NC_000913.2|_1993383_1992727		two component transcriptional regulator, LuxR family		CDS	response regulator		uvrY	
+	1993842	1994066	225	FIG00634007: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_1993842_1994066		Protein of unknown function (DUF2594).		CDS	conserved hypothetical protein			
-	1994134	1994856	723	N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator @ N-3-oxooctanoyl-L-homoserine lactone quorum-sensing transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_1994856_1994134		transcriptional activator SdiA		CDS	regulatory protein SdiA		sdiA	
-	1995086	1995838	753	"Cystine ABC transporter, ATP-binding protein"	peg	gi|49175990|ref|NC_000913.2|_1995838_1995086		L-cystine ABC transporter ATP-binding protein/Diaminopimelate ABC transporter ATP-binding protein	3.6.3.-	CDS	ABC transporter family protein			
-	1995835	1996503	669	"Cystine ABC transporter, permease protein"	peg	gi|49175990|ref|NC_000913.2|_1996503_1995835		L-cystine ABC transporter membrane protein/Diaminopimelate ABC transporter membrane protein		CDS	inner membrane amino-acid ABC transporter permease protein yecS		yecS	
-	1996518	1997504	987	D-cysteine desulfhydrase (EC 4.4.1.15)	peg	gi|49175990|ref|NC_000913.2|_1997504_1996518		D-cysteine desulfhydrase (EC 4.4.1.15)	4.4.1.15	CDS	D-cysteine desulfhydrase	4.4.1.15	dcyD	
-	1997609	1998466	858	"Cystine ABC transporter, periplasmic cystine-binding protein FliY"	peg	gi|49175990|ref|NC_000913.2|_1998409_1997609		L-cystine-binding protein/Diaminopimelate-binding protein		CDS	bacterial extracellular solute-binding s, 3 family protein			
-	1998497	1999048	552	Flagellar biosynthesis protein FliZ	peg	gi|49175990|ref|NC_000913.2|_1999048_1998497		flagellar regulatory protein FliZ		CDS	flagellar regulatory protein FliZ		fliZ	
-	1999094	1999813	720	RNA polymerase sigma factor for flagellar operon	peg	gi|49175990|ref|NC_000913.2|_1999813_1999094		RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG		CDS	RNA polymerase sigma factor for flagellar operon		fliA	
-	2000134	2001630	1497	Flagellar biosynthesis protein FliC	peg	gi|49175990|ref|NC_000913.2|_2001630_2000134		Flagellin and related hook-associated proteins		CDS	flagellin		fliC	
+	2001896	2003302	1407	Flagellar hook-associated protein FliD	peg	gi|49175990|ref|NC_000913.2|_2001896_2003302		Flagellar capping protein		CDS	flagellar hook-associated protein 2		fliD	
+	2003327	2003737	411	Flagellar biosynthesis protein FliS	peg	gi|49175990|ref|NC_000913.2|_2003327_2003737		flagellar biosynthetic protein FliS		CDS	flagellar protein FliS		fliS	
+	2003737	2004102	366	Flagellar biosynthesis protein FliT	peg	gi|49175990|ref|NC_000913.2|_2003737_2004102		Flagellar protein FliT.		CDS	flagellar protein FliT		fliT	
+	2004180	2005667	1488	Cytoplasmic alpha-amylase (EC 3.2.1.1)	peg	gi|49175990|ref|NC_000913.2|_2004180_2005667		Glycosidases	3.2.1.1	CDS	alpha amylase, catalytic domain protein			
-	2005701	2006180	480	FIG00640199: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2006180_2005701		YedD-like protein.		CDS	yedD-like family protein			
+	2006301	2007506	1206	Putative transport system permease protein	peg	gi|49175990|ref|NC_000913.2|_2006301_2007506		Predicted transporter component		CDS	conserved hypothetical protein			
+	2007503	2007736	234	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2007503_2007736		Predicted redox protein, regulator of disulfide bond formation		CDS	conserved hypothetical protein			
+	2007845	2008513	669	Gifsy-2 prophage protein	peg	gi|49175990|ref|NC_000913.2|_2007845_2008513		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2008624	2009103	480	FIG00640229: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2008624_2009103		N-acetylglutamate synthase and related acetyltransferases	2.3.1.-	CDS	conserved hypothetical protein			
-	2009372	2009563	192				hypothetical protein		CDS				
-	2010025	2010375	351				hypothetical protein		CDS				
-	2010724	2011038	315	Flagellar hook-basal body complex protein FliE	peg	gi|49175990|ref|NC_000913.2|_2011038_2010724		flagellar hook-basal body complex protein FliE		CDS	flagellar hook-basal body complex protein FliE		fliE	
+	2011253	2012911	1659	Flagellar M-ring protein FliF	peg	gi|49175990|ref|NC_000913.2|_2011253_2012911		flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)		CDS	flagellar M-ring protein FliF		fliF	
+	2012904	2013899	996	Flagellar motor switch protein FliG	peg	gi|49175990|ref|NC_000913.2|_2012904_2013899		flagellar motor switch protein FliG		CDS	flagellar motor switch protein FliG		fliG	
+	2013892	2014578	687	Flagellar assembly protein FliH	peg	gi|49175990|ref|NC_000913.2|_2013892_2014578		Flagellar biosynthesis/type III secretory pathway protein		CDS	hrpE/YscL/FliH and V-type ATPase subunit E family protein			
+	2014578	2015951	1374	Flagellum-specific ATP synthase FliI	peg	gi|49175990|ref|NC_000913.2|_2014578_2015951		flagellar protein export ATPase FliI	3.6.3.14	CDS	flagellar protein export ATPase FliI	3.6.3.14	fliI	
+	2015970	2016413	444	Flagellar protein FliJ	peg	gi|49175990|ref|NC_000913.2|_2015970_2016413		flagellar export protein FliJ		CDS	flagellar export protein FliJ		fliJ	
+	2016410	2017537	1128	Flagellar hook-length control protein FliK	peg	gi|49175990|ref|NC_000913.2|_2016410_2017537		Flagellar hook-length control protein		CDS	flagellar hook-length control protein		fliK	
+	2017642	2018106	465	Flagellar biosynthesis protein FliL	peg	gi|49175990|ref|NC_000913.2|_2017642_2018106		Flagellar basal body-associated protein		CDS	flagellar basal body-associated FliL family protein			
+	2018111	2019115	1005	Flagellar motor switch protein FliM	peg	gi|49175990|ref|NC_000913.2|_2018111_2019115		flagellar motor switch protein FliM		CDS	flagellar motor switch protein FliM		fliM	
+	2019112	2019525	414	Flagellar motor switch protein FliN	peg	gi|49175990|ref|NC_000913.2|_2019112_2019525		flagellar motor switch protein FliN		CDS	flagellar motor switch protein FliN		fliN	
+	2019528	2019893	366	Flagellar biosynthesis protein FliQ	peg	gi|49175990|ref|NC_000913.2|_2019588_2019893		flagellar biosynthetic protein FliO		CDS	flagellar biosynthetic protein FliO		fliO	
+	2019893	2020630	738	Flagellar biosynthesis protein FliP	peg	gi|49175990|ref|NC_000913.2|_2019893_2020630		flagellar biosynthetic protein FliP		CDS	flagellar biosynthetic protein FliP		fliP	
+	2020640	2020909	270	Flagellar biosynthesis protein FliQ	peg	gi|49175990|ref|NC_000913.2|_2020640_2020909		flagellar biosynthetic protein FliQ		CDS	flagellar biosynthetic protein FliQ		fliQ	
+	2020917	2021702	786	Flagellar biosynthesis protein FliR	peg	gi|49175990|ref|NC_000913.2|_2020917_2021702		flagellar biosynthetic protein FliR		CDS	flagellar biosynthetic protein FliR		fliR	
+	2021992	2022615	624	"Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB"	peg	gi|49175990|ref|NC_000913.2|_2021992_2022615		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	colanic acid capsular biosynthesis activation protein A		rcsA	
-	2022659	2022847	189	DsrB protein	peg	gi|49175990|ref|NC_000913.2|_2022847_2022659		Dextransucrase DSRB.		CDS	dextransucrase DSRB family protein			
+	2023010	2023237	228	putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_2023010_2023237		Protein of unknown function (DUF2525).		CDS	conserved hypothetical protein			
-	2024347	2026041	1695	FIG00638997: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2026023_2024347		diguanylate cyclase (GGDEF) domain		CDS	diguanylate cyclase domain protein			
+	2023535	2024350	816	Putative mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70)	peg	gi|49175990|ref|NC_000913.2|_2023535_2024350		mannosyl-3-phosphoglycerate phosphatase-related protein	3.1.3.70	CDS	putative mannosyl-3-phosphoglycerate phosphatase			
-	2026212	2026394	183	FIG01045396: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2026394_2026212		Uncharacterized small protein		CDS	conserved hypothetical protein			
-	2026473	2027390	918	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_2027384_2026473		Uncharacterized protein conserved in bacteria		CDS	inner membrane protein yedI		yedI	
-	2028472	2028942	471	Very-short-patch mismatch repair endonuclease (G-T specific)	peg	gi|49175990|ref|NC_000913.2|_2028942_2028472		T/G mismatch-specific endonuclease (EC 3.1.-.-)	3.1.-	CDS	very short patch repair protein	3.1.-.-	vsr	
+	2027563	2028483	921	Permease of the drug/metabolite transporter (DMT) superfamily	peg	gi|49175990|ref|NC_000913.2|_2027563_2028483		Carboxylate/Amino Acid/Amine Transporter		CDS	conserved hypothetical protein			
-	2028923	2030341	1419	DNA-cytosine methyltransferase (EC 2.1.1.37)	peg	gi|49175990|ref|NC_000913.2|_2030341_2028923		DNA-methyltransferase (dcm)	2.1.1.37	CDS	DNA-cytosine methyltransferase	2.1.1.37	dcm	
-	2030408	2031103	696	metal-dependent phosphohydrolase	peg	gi|49175990|ref|NC_000913.2|_2031103_2030408		Predicted HD superfamily hydrolase		CDS	conserved hypothetical protein			
-	2031143	2031445	303	FIG00638388: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2031445_2031143		hypothetical protein		CDS	inner membrane protein yedR		yedR	
+	2032075	2032560	486	Outer membrane protein N precursor	peg	gi|49175990|ref|NC_000913.2|_2032075_2032560		Outer membrane protein (porin)		CDS	gram-negative porin family protein			
+	2032582	2032779	198	Outer membrane protein N	peg	gi|49175990|ref|NC_000913.2|_2032582_2032779					gram-negative porin family protein			
+	2032878	2033267	390	Outer membrane protein C precursor	peg	gi|49175990|ref|NC_000913.2|_2032878_2033267		Outer membrane protein (porin)		CDS	gram-negative porin family protein			
+	2033859	2034710	852	Chaperone protein hchA	peg	gi|49175990|ref|NC_000913.2|_2033859_2034710		chaperone Hsp31. Cysteine peptidase. MEROPS family C56		CDS	DJ-1/PfpI family protein			
-	2034818	2036176	1359	Putative two component system histidine kinase YedV	peg	gi|49175990|ref|NC_000913.2|_2035720_2034818		heavy metal sensor kinase	2.7.13.3	CDS	putative sensor-like histidine kinase yedV			
-	2036176	2036958	783	Putative two-component system response regulator YedW	peg	gi|49175990|ref|NC_000913.2|_2036958_2036176		heavy metal response regulator		CDS	putative transcriptional regulatory protein yedW			
+	2036980	2037393	414	Transthyretin-like protein precursor	peg	gi|49175990|ref|NC_000913.2|_2036980_2037393		hydroxyisourate hydrolase	3.5.2.17	CDS	hydroxyisourate hydrolase	3.5.2.17	uraH	
+	2037502	2038506	1005	Putative sulfite oxidase subunit YedY	peg	gi|49175990|ref|NC_000913.2|_2037502_2038506		Sulfite oxidase and related enzymes		CDS	sulfoxide reductase catalytic subunit yedY	1.8.-.-	yedY	
+	2038507	2039142	636	FIG001196: Membrane protein YedZ	peg	gi|49175990|ref|NC_000913.2|_2038507_2039142		Predicted membrane protein		CDS	ferric reductase like transmembrane component family protein			
+	2039399	2040049	651	Candidate zinc-binding lipoprotein ZinT	peg	gi|49175990|ref|NC_000913.2|_2039399_2040049		Predicted periplasmic or secreted protein		CDS	metal-binding protein ZinT		zinT	
+	2040392	2040922	531	Cytochrome b561 homolog 1	peg	gi|49175990|ref|NC_000913.2|_2040392_2040922		Cytochrome B561		CDS	conserved hypothetical protein			
+	2041675	2042472	798	FIG01220476: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2041675_2042472		Uncharacterized protein conserved in bacteria		CDS	protein mtfA		mtfA	
+	2042935	2050038	7104	"adherence and invasion outermembrane protein (Inv,enhances Peyer's patches colonization)"	peg	gi|49175990|ref|NC_000913.2|_2043082_2050038		Large extracellular alpha-helical protein		CDS	bacterial Ig-like domain family protein			
-	2050648	2051352	705	FIG00638424: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2051352_2050648		hypothetical protein		CDS	putative predicted protein, N-terminal fragment			
+	2051667	2052983	1317	Shikimate transporter	peg	gi|49175990|ref|NC_000913.2|_2051667_2052983		metabolite-proton symporter		CDS	H+ symporter family protein			
+	2053085	2054539	1455	AMP nucleosidase (EC 3.2.2.4)	peg	gi|49175990|ref|NC_000913.2|_2053085_2054539		AMP nucleosidase	3.2.2.4	CDS	AMP nucleosidase	3.2.2.4	amn	
+	2054882	2055598	717	FIG007491: hypothetical protein YeeN	peg	gi|49175990|ref|NC_000913.2|_2054882_2055598		DNA-binding regulatory protein, YebC/PmpR family		CDS	conserved hypothetical protein			
-	2056227	2057681	1455	FIG01069516: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2057681_2056227		putative efflux protein, MATE family		CDS	MATE efflux family protein			
-	2057988	2058938	951	Alkanesulfonate utilization operon LysR-family regulator CbI	peg	gi|49175990|ref|NC_000913.2|_2058938_2057988		Transcriptional regulator		CDS	HTH-type transcriptional regulator cbl		cbl	
-	2059040	2059957	918	Nitrogen assimilation regulatory protein Nac	peg	gi|49175990|ref|NC_000913.2|_2059957_2059040		Transcriptional regulator		CDS	nitrogen assimilation regulatory protein nac		nac	
-	2060415	2061350	936	"L,D-transpeptidase ErfK"	peg	gi|49175990|ref|NC_000913.2|_2061347_2060415		Uncharacterized protein conserved in bacteria		CDS	putative L,D-transpeptidase ErfK/SrfK			
-	2061412	2062491	1080	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	peg	gi|49175990|ref|NC_000913.2|_2062491_2061412		nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	2.4.2.21	CDS	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	2.4.2.21	cobT	
-	2062503	2063246	744	Cobalamin synthase	peg	gi|49175990|ref|NC_000913.2|_2063246_2062503		cobalamin-5'-phosphate synthase (EC 2.7.8.26)	2.7.8.26	CDS	cobalamin 5'-phosphate synthase	2.7.8.26	cobS	
-	2063243	2063788	546	Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	peg	gi|49175990|ref|NC_000913.2|_2063788_2063243		adenosylcobinamide kinase (EC 2.7.1.156)/adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	2.7.7.62, 2.7.1.156	CDS	bifunctional adenosylcobalamin biosynthesis protein CobU	2.7.7.62	cobU	
-	2064329	2065345	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2065345_2064329		transposase, IS5 family		CDS	transposase DDE domain protein			
-	2065452	2065616	165	FIG00639305: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2065616_2065452					conserved hypothetical protein			
-	2066976	2067881	906	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2067881_2066976		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	2066659	2067051	393				Outer membrane receptor for ferrienterochelin and colicins		CDS				
-	2067839	2068204	366	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2068204_2067839		Transposase and inactivated derivatives		CDS	transposase family protein			
+	2068376	2068528	153	"COG1629: Outer membrane receptor proteins, mostly Fe transport"	peg	gi|49175990|ref|NC_000913.2|_2068376_2068528					tonB-dependent Receptor Plug domain protein			
+	2068525	2069235	711	NgrB	peg	gi|49175990|ref|NC_000913.2|_2068636_2069235		Predicted GTPase		CDS	putative gTPase-like protein			
+	2069339	2069542	204										
+	2069563	2072682	3120	Antigen 43 precursor	peg	gi|49175990|ref|NC_000913.2|_2069563_2072682		Autotransporter beta-domain./Extended Signal Peptide of Type V secretion system.		CDS	antigen 43		flu	
+	2072803	2074335	1533	probable membrane protein b2001	peg	gi|49175990|ref|NC_000913.2|_2072803_2074335		hypothetical protein		CDS	inner membrane protein yeeR		yeeR	
+	2074332	2074778	447	putative DNA repair protein	peg	gi|49175990|ref|NC_000913.2|_2074332_2074778		DNA repair protein radc		CDS	conserved hypothetical protein			
+	2074841	2075062	222	Uncharacterized protein YeeT	peg	gi|49175990|ref|NC_000913.2|_2074841_2075062		Protein of unknown function (DUF987).		CDS	conserved hypothetical protein			
+	2075136	2075504	369	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2075256_2075504		YagB/YeeU/YfjZ family.		CDS	antitoxin YeeU		yeeU	
+	2075593	2075967	375	YeeV toxin protein	peg	gi|49175990|ref|NC_000913.2|_2075593_2075967		Protein of unknown function (DUF1219).		CDS	toxin CbtA		cbtA	
+	2075964	2076158	195	Uncharacterized protein YeeW	peg	gi|49175990|ref|NC_000913.2|_2075967_2076158		hypothetical protein		CDS	conserved hypothetical protein			
-	2077056	2077385	330	UPF0265 protein YeeX	peg	gi|49175990|ref|NC_000913.2|_2077385_2077056		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2077557	2078615	1059	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_2078615_2077557		Predicted membrane protein		CDS	inner membrane protein yeeA		yeeA	
-	2078813	2079286	474	DNA gyrase inhibitory protein	peg	gi|49175990|ref|NC_000913.2|_2079286_2078813		DNA gyrase inhibitor		CDS	gyrI-like small molecule binding domain protein			
-	2079405	2080571	1167	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|49175990|ref|NC_000913.2|_2080571_2079405		penicillin-binding protein 6. Serine peptidase. MEROPS family S11	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase dacD	3.4.16.4	dacD	
+	2080780	2082207	1428	Exodeoxyribonuclease I (EC 3.1.11.1)	peg	gi|49175990|ref|NC_000913.2|_2080780_2082207		Exodeoxyribonuclease I subunit C (EC 3.1.11.1)	3.1.11.1	CDS	exodeoxyribonuclease I	3.1.11.1	sbcB	
-	2082250	2082477	228	FIG00638167: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2082477_2082250		Predicted redox protein, regulator of disulfide bond formation		CDS	sirA-like family protein			
-	2082491	2083549	1059	Putative transport system permease protein	peg	gi|49175990|ref|NC_000913.2|_2083549_2082491		Predicted transporter component		CDS	conserved hypothetical protein			
-	2083728	2085086	1359	Putrescine importer	peg	gi|49175990|ref|NC_000913.2|_2085086_2083728		putrescine:proton symporter, AAT family (TC 2.A.3.1.13)		CDS	inner membrane transport protein YeeF		yeeF	
-	2085353	2086303	951	Hypothetical transcriptional regulator yeeY	peg	gi|49175990|ref|NC_000913.2|_2086282_2085353		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	2086328	2087152	825	Nucleoside-diphosphate-sugar epimerases	peg	gi|49175990|ref|NC_000913.2|_2087152_2086328		Nucleoside-diphosphate-sugar epimerases		CDS	protein yeeZ		yeeZ	
-	2087235	2087489	255	YoeB toxin protein	peg	gi|49175990|ref|NC_000913.2|_2087489_2087235		toxin-antitoxin system, toxin component, Txe/YoeB family		CDS	addiction module toxin, Txe/YoeB family			
-	2087486	2087737	252	YefM protein (antitoxin to YoeB)	peg	gi|49175990|ref|NC_000913.2|_2087737_2087486		prevent-host-death family protein		CDS	antitoxin YefM		yefM	
+	2088216	2089115	900	ATP phosphoribosyltransferase (EC 2.4.2.17)	peg	gi|49175990|ref|NC_000913.2|_2088216_2089115		ATP phosphoribosyltransferase	2.4.2.17	CDS	ATP phosphoribosyltransferase	2.4.2.17	hisG	
+	2089121	2090425	1305	Histidinol dehydrogenase (EC 1.1.1.23)	peg	gi|49175990|ref|NC_000913.2|_2089121_2090425		histidinol dehydrogenase (EC 1.1.1.23)	1.1.1.23	CDS	histidinol dehydrogenase	1.1.1.23	hisD	
+	2090422	2091492	1071	Histidinol-phosphate aminotransferase (EC 2.6.1.9)	peg	gi|49175990|ref|NC_000913.2|_2090422_2091492		histidinol phosphate aminotransferase apoenzyme (EC 2.6.1.9)	2.6.1.9	CDS	histidinol-phosphate transaminase	2.6.1.9	hisC	
+	2091492	2092559	1068	Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	peg	gi|49175990|ref|NC_000913.2|_2091492_2092559		histidinol-phosphatase	3.1.3.15, 4.2.1.19	CDS	histidine biosynthesis bifunctional protein hisB	4.2.1.19	hisB	
+	2092559	2093149	591	Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)	peg	gi|49175990|ref|NC_000913.2|_2092559_2093149		imidazole glycerol phosphate synthase subunit hisH (EC 2.4.2.-)	2.4.2.-	CDS	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	2.4.2.-	hisH	
+	2093149	2093886	738	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)	peg	gi|49175990|ref|NC_000913.2|_2093149_2093886		1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16)	5.3.1.16	CDS	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase	5.3.1.16	hisA	
+	2093868	2094644	777	Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)	peg	gi|49175990|ref|NC_000913.2|_2093868_2094644		imidazole glycerol phosphate synthase subunit hisF (EC 4.1.3.-)	4.1.3.-	CDS	imidazole glycerol phosphate synthase subunit hisF	4.1.3.-	hisF	
+	2094638	2095249	612	Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	peg	gi|49175990|ref|NC_000913.2|_2094638_2095249		phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)/phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	3.5.4.19, 3.6.1.31	CDS	phosphoribosyl-ATP diphosphatase	3.6.1.31	hisE	
-	2095345	2096325	981	regulator of length of O-antigen component of lipopolysaccharide chains	peg	gi|49175990|ref|NC_000913.2|_2096325_2095345		Chain length determinant protein		CDS	chain length determinant protein		wzzB	
-	2096471	2097637	1167	UDP-glucose dehydrogenase (EC 1.1.1.22)	peg	gi|49175990|ref|NC_000913.2|_2097637_2096471		nucleotide sugar dehydrogenase	1.1.1.22	CDS	UDP-glucose 6-dehydrogenase	1.1.1.22	ugd	
-	2097886	2099292	1407	"6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)"	peg	gi|49175990|ref|NC_000913.2|_2099292_2097886		6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)	1.1.1.44	CDS	6-phosphogluconate dehydrogenase	1.1.1.44	gnd	
-	2099420	2099701	282				Predicted glycosyltransferases		CDS				
-	2099919	2100935	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2100935_2099919		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
-	2100940	2101413	474	"glycosyl transferase, family 2"	peg	gi|49175990|ref|NC_000913.2|_2101413_2100940		Predicted glycosyltransferases		CDS	glycosyl transferase 2 family protein			
-	2101415	2102533	1119	putative glucose transferase	peg	gi|49175990|ref|NC_000913.2|_2102533_2101415		Glycosyltransferase		CDS	glycosyl transferases group 1 family protein			
-	2102518	2103108	591				Acetyltransferase (isoleucine patch superfamily)	2.3.1.-	CDS				
-	2103089	2104081	993	putative Galf transferase	peg	gi|49175990|ref|NC_000913.2|_2104081_2103089		hypothetical protein		CDS	putative glycosyltransferase			
-	2104084	2105250	1167	Oligosaccharide repeat unit polymerase Wzy	peg	gi|49175990|ref|NC_000913.2|_2105250_2104084		hypothetical protein		CDS	putative membrane protein			
-	2105250	2106353	1104	UDP-galactopyranose mutase (EC 5.4.99.9)	peg	gi|49175990|ref|NC_000913.2|_2106353_2105250		UDP-galactopyranose mutase (EC 5.4.99.9)	5.4.99.9	CDS	UDP-galactopyranose mutase	5.4.99.9	glf	
-	2106361	2107608	1248	"Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids"	peg	gi|49175990|ref|NC_000913.2|_2107608_2106361		Membrane protein involved in the export of O-antigen and teichoic acid		CDS	putative O-antigen transporter			
-	2107605	2108162	558				dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	5.1.3.13	CDS				
-	2108162	2109043	882	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	peg	gi|49175990|ref|NC_000913.2|_2109043_2108162		Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24	CDS	glucose-1-phosphate thymidylyltransferase	2.7.7.24	rfbA	
-	2109101	2110000	900	dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	peg	gi|49175990|ref|NC_000913.2|_2110000_2109101		dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	1.1.1.133	CDS	dTDP-4-dehydrorhamnose reductase	1.1.1.133	rfbD	
-	2110000	2111085	1086	"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)"	peg	gi|49175990|ref|NC_000913.2|_2111085_2110000		dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46	CDS	dTDP-glucose 4,6-dehydratase	4.2.1.46	rfbB	
-	2111458	2112351	894	UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	peg	gi|49175990|ref|NC_000913.2|_2112351_2111458		UDP-glucose pyrophosphorylase regulatory subunit	2.7.7.9	CDS	regulatory protein GalF		galF	
-	2112526	2113920	1395	Colanic acid biosynthesis protein wcaM	peg	gi|49175990|ref|NC_000913.2|_2113920_2112526		colanic acid biosynthesis protein WcaM		CDS	colanic acid biosynthesis protein WcaM		wcaM	
-	2113931	2115151	1221	Colanic acid biosynthesis glycosyl transferase WcaL	peg	gi|49175990|ref|NC_000913.2|_2115151_2113931		colanic acid biosynthesis glycosyltransferase WcaL		CDS	colanic acid biosynthesis glycosyltransferase WcaL	2.4.-.-	wcaL	
-	2115148	2116428	1281	Colanic acid biosysnthesis protein WcaK	peg	gi|49175990|ref|NC_000913.2|_2116428_2115148		colanic acid biosynthesis pyruvyl transferase WcaK		CDS	colanic acid biosynthesis pyruvyl transferase WcaK	2.-.-.-	wcaK	
-	2116704	2118182	1479	Lipopolysaccharide biosynthesis protein WzxC	peg	gi|49175990|ref|NC_000913.2|_2118182_2116704		Membrane protein involved in the export of O-antigen and teichoic acid		CDS	lipopolysaccharide biosynthesis protein wzxC		wzxC	
-	2118184	2119578	1395	Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ	peg	gi|49175990|ref|NC_000913.2|_2119578_2118184		Undecaprenyl-phosphate glucose phosphotransferase		CDS	undecaprenyl-phosphate glucose phosphotransferase	2.7.8.-		
-	2119633	2121003	1371	Phosphomannomutase (EC 5.4.2.8)	peg	gi|49175990|ref|NC_000913.2|_2121003_2119633		phosphomannomutase (EC 5.4.2.8)	5.4.2.8	CDS	phosphoglucomutase/phosphomannomutase, C-terminal domain protein			
-	2121108	2122544	1437	Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) / Mannose-6-phosphate isomerase (EC 5.3.1.8)	peg	gi|49175990|ref|NC_000913.2|_2122544_2121108		mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8)	2.7.7.13	CDS	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	5.3.1.8		
-	2122547	2123770	1224	Colanic acid biosysnthesis glycosyl transferase WcaI	peg	gi|49175990|ref|NC_000913.2|_2123770_2122547		colanic acid biosynthesis glycosyl transferase WcaI		CDS	colanic acid biosynthesis glycosyltransferase WcaI	2.4.-.-	wcaI	
-	2123767	2124249	483	GDP-mannose mannosyl hydrolase (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_2124246_2123767		ADP-ribose pyrophosphatase	3.6.1.-	CDS	GDP-mannose mannosyl hydrolase	3.6.1.-	nudD	
-	2124249	2125214	966	GDP-L-fucose synthetase (EC 1.1.1.271); Colanic acid biosynthesis protein wcaG	peg	gi|49175990|ref|NC_000913.2|_2125214_2124249		Nucleoside-diphosphate-sugar epimerases	1.1.1.271	CDS	GDP-L-fucose synthase	1.1.1.271	fcl	
-	2125217	2126338	1122	"GDP-mannose 4,6-dehydratase (EC 4.2.1.47)"	peg	gi|49175990|ref|NC_000913.2|_2126338_2125217		GDP-mannose 4,6-dehydratase	4.2.1.47	CDS	GDP-mannose 4,6-dehydratase	4.2.1.47	gmd	
-	2126364	2126912	549	Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_2126912_2126364		colanic acid biosynthesis acetyltransferase WcaF	2.3.1.-	CDS	colanic acid biosynthesis acetyltransferase WcaF	2.3.1.-	wcaF	
-	2126928	2127674	747	Colanic acid biosynthesis glycosyl transferase WcaE	peg	gi|49175990|ref|NC_000913.2|_2127674_2126928		colanic acid biosynthesis glycosyl transferase WcaE	2.4.-	CDS	colanic acid biosynthesis glycosyltransferase WcaE	2.4.-.-	wcaE	
-	2127685	2128902	1218	Colanic acid polymerase WcaD	peg	gi|49175990|ref|NC_000913.2|_2128869_2127685		putative colanic acid polymerase WcaD		CDS	putative colanic acid polymerase WcaD			
-	2128877	2130094	1218	Colanic acid biosynthesis glycosyl transferase WcaC	peg	gi|49175990|ref|NC_000913.2|_2130094_2128877		colanic acid biosynthesis glycosyl transferase WcaC	2.4.-	CDS	colanic acid biosynthesis glycosyltransferase WcaC	2.4.-.-	wcaC	
-	2130091	2130579	489	Colanic acid biosynthesis acetyltransferase WcaB (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_2130579_2130091		colanic acid biosynthesis acetyltransferase WcaB	2.3.1.-	CDS	colanic acid biosynthesis acetyltransferase WcaB	2.3.1.-	wcaB	
-	2130582	2131421	840	Colanic acid biosynthesis glycosyl transferase WcaA	peg	gi|49175990|ref|NC_000913.2|_2131421_2130582		colanic acid biosynthesis glycosyl transferase WcaA		CDS	colanic acid biosynthesis glycosyltransferase WcaA	2.4.-.-	wcaA	
-	2131514	2133676	2163	Tyrosine-protein kinase Wzc (EC 2.7.10.2)	peg	gi|49175990|ref|NC_000913.2|_2133676_2131514		capsular exopolysaccharide family	2.7.10.-	CDS	tyrosine-protein kinase wzc	2.7.10.-	wzc	
-	2133679	2134122	444	Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48)	peg	gi|49175990|ref|NC_000913.2|_2134122_2133679		Protein-tyrosine-phosphatase	3.1.3.48	CDS	low molecular weight protein-tyrosine-phosphatase wzb	3.1.3.48	wzb	
-	2134128	2135267	1140	Polysaccharide export lipoprotein Wza	peg	gi|49175990|ref|NC_000913.2|_2135174_2134128		Periplasmic protein involved in polysaccharide export		CDS	putative outer membrane lipoprotein Wza			
+	2135926	2137509	1584	Putative capsular polysaccharide transport protein YegH	peg	gi|49175990|ref|NC_000913.2|_2135926_2137509		Membrane protein TerC, possibly involved in tellurium resistance		CDS	transporter associated domain protein			
-	2137783	2139636	1854	AsmA protein	peg	gi|49175990|ref|NC_000913.2|_2139636_2137783		Uncharacterized protein involved in outer membrane biogenesis		CDS	asmA family protein			
-	2139658	2140239	582	Deoxycytidine triphosphate deaminase (EC 3.5.4.13)	peg	gi|49175990|ref|NC_000913.2|_2140239_2139658		dCTP deaminase (EC 3.5.4.13)	3.5.4.13	CDS	deoxycytidine triphosphate deaminase	3.5.4.13	dcd	
-	2140331	2140972	642	Uridine kinase (EC 2.7.1.48) [C1]	peg	gi|49175990|ref|NC_000913.2|_2140972_2140331		uridine kinase (EC 2.7.1.48)	2.7.1.48	CDS	uridine kinase	2.7.1.48	udk	
+	2141290	2144607	3318	FIG00639031: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2141290_2144607		PAS domain S-box/diguanylate cyclase (GGDEF) domain		CDS	diguanylate cyclase domain protein			
-	2144716	2145564	849	DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	peg	gi|49175990|ref|NC_000913.2|_2145564_2144716		DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	3.2.2.21	CDS	DNA-3-methyladenine glycosylase 2	3.2.2.21	alkA	
+	2145698	2147050	1353	Putative heat shock protein YegD	peg	gi|49175990|ref|NC_000913.2|_2145698_2147050		Molecular chaperone		CDS	hsp70 family protein			
-	2147063	2149009	1947	Putative chaperonin	peg	gi|49175990|ref|NC_000913.2|_2149009_2147063		Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains		CDS	conserved hypothetical protein			
+	2149209	2149670	462	FIG00639186: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2149209_2149670		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2149735	2150415	681	COG0631: Serine/threonine protein phosphatase	peg	gi|49175990|ref|NC_000913.2|_2150415_2149735		Protein phosphatase 2C.		CDS	phosphatase 2C family protein			
-	2150493	2151152	660	FIG00638207: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2151152_2150493		Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain		CDS	von Willebrand factor type A domain protein			
+	2152040	2153287	1248	Probable RND efflux membrane fusion protein	peg	gi|49175990|ref|NC_000913.2|_2152040_2153287		RND family efflux transporter, MFP subunit		CDS	efflux transporter, RND family, MFP subunit			
+	2153287	2156409	3123	Multidrug transporter MdtB	peg	gi|49175990|ref|NC_000913.2|_2153287_2156409		Cation/multidrug efflux pump		CDS	export membrane family protein			
+	2156410	2159487	3078	Multidrug transporter MdtC	peg	gi|49175990|ref|NC_000913.2|_2156410_2159487		Cation/multidrug efflux pump		CDS	multidrug resistance protein MdtC		mdtC	
+	2159488	2160903	1416	Multidrug transporter MdtD	peg	gi|49175990|ref|NC_000913.2|_2159488_2160903		drug resistance transporter, EmrB/QacA subfamily		CDS	putative multidrug resistance protein mdtD			
+	2160900	2162303	1404	Sensory histidine kinase BaeS	peg	gi|49175990|ref|NC_000913.2|_2160900_2162303		Signal transduction histidine kinase	2.7.13.3	CDS	HAMP domain protein			
+	2162300	2163022	723	Response regulator BaeR	peg	gi|49175990|ref|NC_000913.2|_2162300_2163022		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory , C terminal family protein			
+	2162976	2163173	198	FIG00638368: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2162976_2163173					putative two-component system protein			
+	2163213	2163545	333	FIG00638559: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2163213_2163545		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2163692	2165053	1362	Putative protease	peg	gi|49175990|ref|NC_000913.2|_2163692_2165053		Collagenase and related proteases	3.4.-	CDS	peptidase U32 family protein			
-	2165326	2165580	255	putative positive regulator of late gene transcription	peg	gi|49175990|ref|NC_000913.2|_2165580_2165326		Ogr/Delta-like zinc finger.		CDS	ogr/Delta-like zinc finger family protein			
-	2166013	2166345	333	FIG00639423: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2166345_2166013		hypothetical protein		CDS	conserved hypothetical protein			
+	2166736	2167635	900	Transcription regulator [contains diacylglycerol kinase catalytic domain]	peg	gi|49175990|ref|NC_000913.2|_2166736_2167635		lipid kinase YegS		CDS	lipid kinase YegS	2.7.1.-	yegS	
-	2167717	2168163	447	Galactitol utilization operon repressor	peg	gi|49175990|ref|NC_000913.2|_2168163_2167717		Transcriptional regulators of sugar metabolism		CDS	deoR C terminal sensor domain protein			
+	2168260	2168559	300	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2168260_2168559		Transposase.		CDS	transposase family protein			
-	2169419	2169757	339	Galactitol utilization operon repressor	peg	gi|49175990|ref|NC_000913.2|_2169694_2169419		Transcriptional regulators of sugar metabolism		CDS	deoR-like helix-turn-helix domain protein			
+	2168556	2169422	867	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2168556_2169422		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	2169857	2170897	1041	Galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251)	peg	gi|49175990|ref|NC_000913.2|_2170897_2169857		galactitol 1-phosphate 5-dehydrogenase (EC 1.1.1.251)	1.1.1.251	CDS	zinc-binding dehydrogenase family protein			
-	2170945	2172300	1356	"PTS system, galactitol-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2172300_2170945		PTS system galactitol-specific EIIC component, Gat family (TC 4.A.5.1.1)		CDS	galactitol permease IIC component		gatC	
-	2172304	2172588	285	"PTS system, galactitol-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2172588_2172304		PTS system galactitol-specific EIIB component, Gat family (TC 4.A.5.1.1)	2.7.1.69	CDS	galactitol-specific phosphotransferase enzyme IIB component	2.7.1.69	gatB	
-	2172619	2173071	453	"PTS system, galactitol-specific IIA component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2173071_2172619		PTS system galactitol-specific EIIA component, Gat family (TC 4.A.5.1.1)	2.7.1.69	CDS	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein			
-	2173081	2174343	1263	Tagatose-6-phosphate kinase GatZ (EC 2.7.1.144)	peg	gi|49175990|ref|NC_000913.2|_2174343_2173081		tagatose-bisphosphate aldolase noncatalytic subunit	2.7.1.144	CDS	D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	4.1.2.40		
-	2174372	2175226	855	"Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)"	peg	gi|49175990|ref|NC_000913.2|_2175226_2174372		tagatose-bisphosphate aldolase catalytic subunit	4.1.2.40	CDS	class II aldolase, tagatose bisphosphate family	4.1.2.-		
-	2175534	2176586	1053	Fructose-bisphosphate aldolase class I (EC 4.1.2.13)	peg	gi|49175990|ref|NC_000913.2|_2176586_2175534		fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13	CDS	fructose-bisphosphate aldolase class 1	4.1.2.13	fbaB	
+	2176843	2178120	1278	Putative nucleoside transporter YegT	peg	gi|49175990|ref|NC_000913.2|_2176843_2178120		nucleoside transporter		CDS	putative nucleoside transporter yegT			
+	2178117	2179121	1005	ADP-ribosylglycohydrolase YegU (EC 3.2.-.-)	peg	gi|49175990|ref|NC_000913.2|_2178117_2179121		ADP-ribosylglycohydrolase	3.2.-	CDS	ADP-ribosylglycohydrolase family protein			
-	2180057	2180803	747	Uncharacterized HTH-type transcriptional regulator YegW	peg	gi|49175990|ref|NC_000913.2|_2180803_2180057		transcriptional regulator, GntR family		CDS	conserved hypothetical protein			
+	2179118	2180083	966	"Uncharacterized sugar kinase YegV, PfkB family"	peg	gi|49175990|ref|NC_000913.2|_2179118_2180083		Sugar kinases, ribokinase family		CDS	pfkB carbohydrate kinase family protein			
-	2180855	2181673	819	"Glycosyl hydrolase YegX, family 25"	peg	gi|49175990|ref|NC_000913.2|_2181673_2180855		Lyzozyme M1 (1,4-beta-N-acetylmuramidase)		CDS	glycosyl hydrolases 25 family protein			
-	2181738	2182538	801	Phosphomethylpyrimidine kinase (EC 2.7.4.7)	peg	gi|49175990|ref|NC_000913.2|_2182538_2181738		hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	2.7.1.49, 2.7.4.7	CDS	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	2.7.4.7	thiD	
-	2182535	2183323	789	Hydroxyethylthiazole kinase (EC 2.7.1.50)	peg	gi|49175990|ref|NC_000913.2|_2183323_2182535		hydroxyethylthiazole kinase	2.7.1.50	CDS	hydroxyethylthiazole kinase	2.7.1.50	thiM	
-	2183546	2183818	273	Uncharacterized protein YohL	peg	gi|49175990|ref|NC_000913.2|_2183818_2183546		Uncharacterized protein conserved in bacteria		CDS	transcriptional repressor rcnR		rcnR	
+	2183939	2184763	825	Nickel/cobalt efflux transporter RcnA	peg	gi|49175990|ref|NC_000913.2|_2183939_2184763		ABC-type uncharacterized transport system, permease component		CDS	nickel/cobalt efflux system rcnA		rcnA	
+	2184982	2185320	339	Uncharacterized protein YohN precursor	peg	gi|49175990|ref|NC_000913.2|_2184982_2185320		Predicted integral membrane protein		CDS	conserved hypothetical protein			
-	2185402	2186436	1035	Uncharacterized protein YehA precursor	peg	gi|49175990|ref|NC_000913.2|_2186436_2185402		Fimbrial protein.		CDS	fimbrial family protein			
-	2186452	2188932	2481	Fimbriae usher protein StcC	peg	gi|49175990|ref|NC_000913.2|_2188932_2186452		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
-	2188948	2189667	720	Uncharacterized fimbrial chaperone YehC precursor	peg	gi|49175990|ref|NC_000913.2|_2189667_2188948		P pilus assembly protein, chaperone PapD		CDS	gram-negative pili assembly chaperone, C-terminal domain protein			
-	2189702	2190244	543	Putative fimbrial-like protein	peg	gi|49175990|ref|NC_000913.2|_2190244_2189702		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	2190537	2190818	282	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2190692_2190537		Protein of unknown function (DUF2574).		CDS	conserved hypothetical protein			
-	2191081	2192190	1110	"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like"	peg	gi|49175990|ref|NC_000913.2|_2192190_2191081		ATPases involved in chromosome partitioning		CDS	cobQ/CobB/MinD/ParA nucleotide binding domain protein			
+	2192322	2194355	2034	Methionyl-tRNA synthetase (EC 6.1.1.10)	peg	gi|49175990|ref|NC_000913.2|_2192322_2194355		methionyl-tRNA synthetase (EC 6.1.1.10)	6.1.1.10	CDS	methionyl-tRNA synthetase	6.1.1.10	metG	
+	2194496	2195320	825	Molybdate metabolism regulator	peg	gi|49175990|ref|NC_000913.2|_2194496_2195320		Uncharacterized conserved protein		CDS	WGR domain protein			
+	2195432	2197369	1938	Molybdate metabolism regulator	peg	gi|49175990|ref|NC_000913.2|_2195432_2197369		hypothetical protein		CDS	putative molybdate metabolism regulator domain protein			
+	2197332	2198291	960	Molybdate metabolism regulator	peg	gi|49175990|ref|NC_000913.2|_2197332_2198291		Domain of unknown function (DUF4132).		CDS	conserved hypothetical protein			
+	2198301	2201933	3633	Molybdate metabolism regulator	peg	gi|49175990|ref|NC_000913.2|_2198301_2201933		Domain of unknown function (DUF4132).		CDS	conserved hypothetical protein			
+	2201994	2202311	318				hypothetical protein		CDS				
+	2202618	2203706	1089	FIG00638960: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2202618_2203706		MoxR-like ATPases		CDS	AAA domain family protein			
+	2203717	2205996	2280	FIG00765533: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2203717_2205996		hypothetical protein		CDS	conserved hypothetical protein			
+	2205989	2207125	1137	Mg-chelatase subunit ChlD	peg	gi|49175990|ref|NC_000913.2|_2205989_2207125		Protein containing von Willebrand factor type A (vWA) domain		CDS	von Willebrand factor type A domain protein			
+	2207122	2208966	1845	YehQ protein	peg	gi|49175990|ref|NC_000913.2|_2207122_2208966		SWIM zinc finger.		CDS	SWIM zinc finger family protein			
+	2208967	2209122	156	YehQ protein	peg	gi|49175990|ref|NC_000913.2|_2208967_2209122					putative yehQ domain protein			
+	2209247	2209708	462	Hypothetical lipoprotein yehR	peg	gi|49175990|ref|NC_000913.2|_2209247_2209708		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2209748	2210218	471	FIG00638377: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2210218_2209748		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2210265	2210984	720	Hypothetical response regulatory protein yehT	peg	gi|49175990|ref|NC_000913.2|_2210984_2210265		two component transcriptional regulator, LytTR family		CDS	response regulator			
-	2210981	2212666	1686	Putative two-component system sensor kinase	peg	gi|49175990|ref|NC_000913.2|_2212666_2210981		Putative regulator of cell autolysis	2.7.13.3	CDS	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			
+	2212888	2213619	732	HTH-type transcriptional regulator mlrA	peg	gi|49175990|ref|NC_000913.2|_2212888_2213619		Predicted transcriptional regulators		CDS	HTH-type transcriptional repressor YcgE		ycgE	
-	2213767	2214498	732	Osmoprotectant ABC transporter inner membrane protein YehW	peg	gi|49175990|ref|NC_000913.2|_2214498_2213767		ABC-type proline/glycine betaine transport systems, permease component		CDS	putative osmoprotectant uptake system permease protein yehW			
-	2214503	2215429	927	Osmoprotectant ABC transporter ATP-binding subunit YehX	peg	gi|49175990|ref|NC_000913.2|_2215429_2214503		ABC-type proline/glycine betaine transport systems, ATPase components		CDS	ABC transporter family protein			
-	2215422	2216579	1158	Osmoprotectant ABC transporter permease protein YehY	peg	gi|49175990|ref|NC_000913.2|_2216579_2215422		ABC-type proline/glycine betaine transport systems, permease component		CDS	putative osmoprotectant uptake system permease protein yehY			
-	2216586	2217503	918	Osmoprotectant ABC transporter binding protein YehZ	peg	gi|49175990|ref|NC_000913.2|_2217503_2216586		Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)		CDS	substrate binding domain of ABC-type glycine betaine transport system family protein			
-	2217714	2220011	2298	Periplasmic beta-glucosidase (EC 3.2.1.21)	peg	gi|49175990|ref|NC_000913.2|_2220011_2217714		beta-glucosidase (EC:3.2.1.21)	3.2.1.21	CDS	periplasmic beta-glucosidase	3.2.1.21	bglX	
+	2220012	2220170	159	FIG00640500: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2220012_2220170					conserved hypothetical protein			
+	2220207	2221922	1716	D-Lactate dehydrogenase (EC 1.1.2.5)	peg	gi|49175990|ref|NC_000913.2|_2220207_2221922		FAD/FMN-containing dehydrogenases	1.1.1.28	CDS	D-lactate dehydrogenase	1.1.1.28	dld	
-	2221960	2222892	933	Murein-DD-endopeptidase (EC 3.4.99.-)	peg	gi|49175990|ref|NC_000913.2|_2222853_2221960		murein-DD-endopeptidase. Serine peptidase. MEROPS family S11	3.4.21.-	CDS	D-alanyl-D-alanine endopeptidase	3.4.21.-	pbpG	
-	2223066	2223653	588	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_2223653_2223066		Protein of unknown function (DUF1282).		CDS	inner membrane protein yohC		yohC	
+	2223823	2224401	579	DedA family inner membrane protein YohD	peg	gi|49175990|ref|NC_000913.2|_2223823_2224401		Uncharacterized membrane-associated protein		CDS	inner membrane protein yohD		yohD	
-	2224531	2225292	762	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|49175990|ref|NC_000913.2|_2225292_2224531		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
-	2225345	2226541	1197	"RND efflux system, outer membrane lipoprotein, NodT family"	peg	gi|49175990|ref|NC_000913.2|_2226541_2225345		efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family		CDS	efflux transporter, outer membrane factor (OMF) lipo, NodT family protein			
-	2226571	2226780	210	"RND efflux system, outer membrane lipoprotein, NodT family"	peg	gi|49175990|ref|NC_000913.2|_2226780_2226571					conserved hypothetical protein			
-	2227460	2228473	1014	tRNA-dihydrouridine synthase C (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2228473_2227460		tRNA-U20a,U20b-dihydrouridine synthase	1.-	CDS	tRNA-dihydrouridine synthase C	1.-.-.-	dusC	
+	2228646	2229044	399	Antiholin-like protein LrgA	peg	gi|49175990|ref|NC_000913.2|_2228646_2229044		Putative effector of murein hydrolase LrgA		CDS	lrgA family protein			
+	2229041	2229736	696	LrgA-associated membrane protein LrgB	peg	gi|49175990|ref|NC_000913.2|_2229041_2229736		TIGR00659 family protein		CDS	inner membrane protein yohK		yohK	
+	2229866	2230750	885	Cytidine deaminase (EC 3.5.4.5)	peg	gi|49175990|ref|NC_000913.2|_2229866_2230750		cytidine deaminase (EC 3.5.4.5)	3.5.4.5	CDS	cytidine deaminase	3.5.4.5	cdd	
+	2230900	2231619	720	SanA protein	peg	gi|49175990|ref|NC_000913.2|_2230900_2231619		Uncharacterized membrane protein		CDS	conserved hypothetical protein			
+	2231622	2231861	240	FIG00638799: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2231622_2231861		Protein of unknown function (DUF2542).		CDS	conserved hypothetical protein			
+	2232055	2233293	1239	Pyridine nucleotide-disulphide oxidoreductase family protein	peg	gi|49175990|ref|NC_000913.2|_2232055_2233293		NADPH-dependent glutamate synthase beta chain and related oxidoreductases		CDS	NAD-dependent dihydropyrimidine dehydrogenase sunbunit PreT	1.3.1.1	yeiT	
+	2233287	2234522	1236	Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	peg	gi|49175990|ref|NC_000913.2|_2233287_2234522		dihydroorotate oxidase B, catalytic subunit (EC 1.3.3.1)		CDS	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	1.3.1.1	yeiA	
-	2234765	2235775	1011	"Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)"	peg	gi|49175990|ref|NC_000913.2|_2235775_2234765		glucose ABC transporter membrane protein/galactose ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
-	2235791	2237311	1521	"Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)"	peg	gi|49175990|ref|NC_000913.2|_2237266_2235791		glucose ABC transporter ATP-binding protein/galactose ABC transporter ATP-binding protein	3.6.3.17	CDS	galactose/methyl galactoside import ATP-binding protein MglA	3.6.3.17	mglA	
-	2237372	2238370	999	"Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)"	peg	gi|49175990|ref|NC_000913.2|_2238370_2237372		glucose-binding protein/galactose-binding protein		CDS	D-galactose-binding periplasmic protein		mglB	
-	2238650	2239690	1041	"Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator"	peg	gi|49175990|ref|NC_000913.2|_2239690_2238650		transcriptional regulator, LacI family		CDS	bacterial regulatory s, lacI family protein			
-	2239832	2240989	1158	FIG00924762: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2240989_2239832		Predicted membrane protein		CDS	conserved hypothetical protein			
-	2241006	2241674	669	GTP cyclohydrolase I (EC 3.5.4.16) type 1	peg	gi|49175990|ref|NC_000913.2|_2241674_2241006		GTP cyclohydrolase I (EC 3.5.4.16)	3.5.4.16	CDS	GTP cyclohydrolase I	3.5.4.16	folE	
+	2241932	2242768	837	S-formylglutathione hydrolase (EC 3.1.2.12)	peg	gi|49175990|ref|NC_000913.2|_2241932_2242768		S-formylglutathione hydrolase	3.1.2.12	CDS	S-formylglutathione hydrolase	3.1.2.12	fghA	
-	2242800	2244791	1992	Colicin I receptor precursor	peg	gi|49175990|ref|NC_000913.2|_2244725_2242800		Outer membrane receptor for ferrienterochelin and colicins		CDS	colicin I receptor		cirA	
-	2245085	2246554	1470	Lysine-specific permease	peg	gi|49175990|ref|NC_000913.2|_2246554_2245085		lysine:proton symporter, AAT family (TC 2.A.3.1.2)		CDS	lysine-specific permease		lysP	
-	2246538	2246720	183	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2246720_2246538					conserved hypothetical protein			
-	2246759	2247640	882	LysR family transcriptional regulator YeiE	peg	gi|49175990|ref|NC_000913.2|_2247640_2246759		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	2247739	2248788	1050	Putative membrane protein YeiH	peg	gi|49175990|ref|NC_000913.2|_2247739_2248788		conserved hypothetical integral membrane protein		CDS	conserved hypothetical protein			
+	2248862	2249719	858	Endonuclease IV (EC 3.1.21.2)	peg	gi|49175990|ref|NC_000913.2|_2248862_2249719		Endonuclease IV (EC 3.1.21.-)	3.1.21.2	CDS	apurinic endonuclease family protein			
+	2249722	2250810	1089	Uncharacterized sugar kinase YeiI	peg	gi|49175990|ref|NC_000913.2|_2249722_2250810		Sugar kinases, ribokinase family		CDS	pfkB carbohydrate kinase family protein			
-	2250917	2252167	1251	Probable pyrimidine nucleoside transport protein associated with pseudouridine catabolism	peg	gi|49175990|ref|NC_000913.2|_2252167_2250917		nucleoside transporter		CDS	nucleoside permease nupX		nupX	
-	2252267	2253208	942	Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	peg	gi|49175990|ref|NC_000913.2|_2253208_2252267		Inosine-uridine nucleoside N-ribohydrolase	3.2.2.8	CDS	pyrimidine-specific ribonucleoside hydrolase rihB	3.2.2.8	rihB	
+	2253338	2254036	699	Predicted N-ribosylNicotinamide CRP-like regulator	peg	gi|49175990|ref|NC_000913.2|_2253338_2254036		cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	regulatory protein nsr		nsr	
-	2254107	2255357	1251	"Inner membrane transport protein YeiM, in cluster with pseudouridine metabolism operon"	peg	gi|49175990|ref|NC_000913.2|_2255357_2254107		nucleoside transporter		CDS	putative pseudouridine transporter			
-	2255451	2256389	939	Pseudouridine 5'-phosphate glycosidase	peg	gi|49175990|ref|NC_000913.2|_2256389_2255451		Uncharacterized enzyme involved in pigment biosynthesis		CDS	pseudouridine-5'-phosphate glycosidase	3.2.-.-	psuG	
-	2256377	2257318	942	Pseudouridine kinase (EC 2.7.1.83)	peg	gi|49175990|ref|NC_000913.2|_2257318_2256377		Sugar kinases, ribokinase family		CDS	pseudouridine kinase	2.7.1.83	psuK	
-	2257741	2259432	1692	"PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2259432_2257741		PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.1)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.1)		CDS	PTS system, Fru family, IIB component domain protein	2.7.1.69		
-	2259449	2260387	939	1-phosphofructokinase (EC 2.7.1.56)	peg	gi|49175990|ref|NC_000913.2|_2260387_2259449		fructose-1-phosphate kinase (EC 2.7.1.56)	2.7.1.56	CDS	1-phosphofructokinase	2.7.1.56	pfkB	
-	2260387	2261517	1131	"Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2261517_2260387		Phosphocarrier protein HPr/PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.1)		CDS	phosphocarrier, HPr family protein			
-	2263063	2263317	255	proteinase inhibitor	peg	gi|49175990|ref|NC_000913.2|_2263251_2263063		Flagellin N-methylase.		CDS	putative uPF0153 protein yeiW			
+	2261885	2263066	1182	Sugar efflux transporter B	peg	gi|49175990|ref|NC_000913.2|_2261885_2263066		sugar efflux transporter		CDS	sugar efflux transporter B		setB	
-	2263208	2263369	162	FIG00638093: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2263369_2263208					putative uPF0153 protein yeiW			
+	2263472	2264044	573	Translation elongation factor P-related protein	peg	gi|49175990|ref|NC_000913.2|_2263472_2264044		elongation factor P-like protein YeiP		CDS	elongation factor P-like protein		yeiP	
+	2264267	2265733	1467	D-mannonate oxidoreductase (EC 1.1.1.57)	peg	gi|49175990|ref|NC_000913.2|_2264267_2265733		Mannitol-1-phosphate/altronate dehydrogenases		CDS	mannitol dehydrogenase Rossmann domain protein			
+	2265851	2266837	987	"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"	peg	gi|49175990|ref|NC_000913.2|_2265851_2266837		Putative GTPases (G3E family)		CDS	cobW/HypB/UreG, nucleotide-binding domain protein			
+	2266876	2267589	714	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_2266876_2267589		lipid-A kinase		CDS	inner membrane protein yeiU		yeiU	
+	2268001	2268567	567	Lipoprotein spr precursor	peg	gi|49175990|ref|NC_000913.2|_2268001_2268567		spr peptidase. Cysteine peptidase. MEROPS family C40		CDS	lipoprotein spr		spr	
+	2268748	2270304	1557	Rtn protein	peg	gi|49175990|ref|NC_000913.2|_2268811_2270304		FOG: EAL domain		CDS	EAL domain protein			
+	2270386	2272200	1815	"ABC transporter, periplasmic substrate-binding protein"	peg	gi|49175990|ref|NC_000913.2|_2270386_2272200		ABC-type oligopeptide transport system, periplasmic component		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
+	2272201	2273295	1095	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)	peg	gi|49175990|ref|NC_000913.2|_2272201_2273295		ABC-type uncharacterized transport system, permease component		CDS	inner membrane ABC transporter permease protein yejB		yejB	
+	2273295	2274320	1026	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)	peg	gi|49175990|ref|NC_000913.2|_2273295_2274320		ABC-type uncharacterized transport system, permease component		CDS	inner membrane ABC transporter permease protein yejE		yejE	
+	2274322	2275911	1590	Putative ABC transporter ATP-binding protein	peg	gi|49175990|ref|NC_000913.2|_2274322_2275911		ABC-type uncharacterized transport system, duplicated ATPase component		CDS	nickel import ATP-binding protein NikE	3.6.3.24	nikE	
-	2275915	2276259	345	FIG00896318: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2276259_2275915		YejG-like protein.		CDS	yejG-like family protein			
-	2276592	2277782	1191	"MFS family multidrug transport protein, bicyclomycin resistance protein"	peg	gi|49175990|ref|NC_000913.2|_2277782_2276592		drug resistance transporter, Bcr/CflA subfamily		CDS	bicyclomycin resistance protein		bcr	
-	2277810	2278505	696	Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_2278505_2277810		ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-)	5.4.99.19	CDS	ribosomal small subunit pseudouridine synthase A	5.4.99.19	rsuA	
+	2278654	2280414	1761	ATP-dependent RNA helicase YejH	peg	gi|49175990|ref|NC_000913.2|_2278654_2280414		DNA or RNA helicases of superfamily II		CDS	helicase conserved C-terminal domain protein			
+	2280539	2280823	285	LSU ribosomal protein L25p	peg	gi|49175990|ref|NC_000913.2|_2280539_2280823		LSU ribosomal protein L25P		CDS	50S ribosomal protein L25		rplY	
-	2280962	2281969	1008	Nucleoid-associated protein NdpA	peg	gi|49175990|ref|NC_000913.2|_2281969_2280962		Nucleoid-associated protein		CDS	nucleoid-associated protein YejK		yejK	
+	2282151	2282378	228	FIG002927: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2282151_2282378		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2282398	2284158	1761	FIG001881: hydrolase of alkaline phosphatase superfamily	peg	gi|49175990|ref|NC_000913.2|_2282398_2284158		Predicted hydrolase of alkaline phosphatase superfamily		CDS	inner membrane protein yejM		yejM	
-	2284412	2286922	2511	Putative ATP-binding component of a transport system	peg	gi|49175990|ref|NC_000913.2|_2286691_2284412		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
-	2287087	2288103	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2288103_2287087		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
+	2288522	2289169	648	Nitrate/nitrite response regulator protein	peg	gi|49175990|ref|NC_000913.2|_2288522_2289169		two component transcriptional regulator, LuxR family		CDS	bacterial regulatory s, luxR family protein			
-	2289380	2290432	1053	Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH	peg	gi|49175990|ref|NC_000913.2|_2290432_2289380		Cytochrome c biogenesis factor		CDS	cytochrome c-type biogenesis protein CcmH		ccmH	
-	2290429	2290986	558	"Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase"	peg	gi|49175990|ref|NC_000913.2|_2290986_2290429		periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily		CDS	thiol:disulfide interchange protein DsbE		dsbE	
-	2290983	2292926	1944	Cytochrome c heme lyase subunit CcmF	peg	gi|49175990|ref|NC_000913.2|_2292926_2290983		c-type cytochrome biogenesis protein CcmF		CDS	cytochrome c-type biogenesis protein CcmF		ccmF	
-	2292923	2293402	480	"Cytochrome c-type biogenesis protein CcmE, heme chaperone"	peg	gi|49175990|ref|NC_000913.2|_2293402_2292923		Cytochrome c-type biogenesis protein CcmE		CDS	cytochrome c-type biogenesis protein CcmE		ccmE	
-	2293399	2293608	210	"Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE"	peg	gi|49175990|ref|NC_000913.2|_2293608_2293399		heme exporter protein CcmD		CDS	heme exporter protein CcmD		ccmD	
-	2293605	2294342	738	"Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE"	peg	gi|49175990|ref|NC_000913.2|_2294342_2293605		heme exporter protein CcmC		CDS	heme exporter CcmC family protein		ccmC	
-	2294384	2295046	663	"ABC transporter involved in cytochrome c biogenesis, CcmB subunit"	peg	gi|49175990|ref|NC_000913.2|_2295046_2294384		heme exporter protein CcmB		CDS	heme exporter protein CcmB		ccmB	
-	2295043	2295660	618	"ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA"	peg	gi|49175990|ref|NC_000913.2|_2295660_2295043		heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
-	2295679	2296281	603	Cytochrome c-type protein NapC	peg	gi|49175990|ref|NC_000913.2|_2296281_2295679		periplasmic nitrate reductase subunit NapC		CDS	periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family protein			
-	2296291	2296740	450	Nitrate reductase cytochrome c550-type subunit	peg	gi|49175990|ref|NC_000913.2|_2296740_2296291		periplasmic nitrate reductase subunit NapB		CDS	diheme cytochrome c NapB		napB	
-	2296737	2297600	864	Polyferredoxin NapH (periplasmic nitrate reductase)	peg	gi|49175990|ref|NC_000913.2|_2297600_2296737		periplasmic nitrate reductase subunit NapH		CDS	ferredoxin-type , NapH/MauN family protein			
-	2297587	2298282	696	Ferredoxin-type protein NapG (periplasmic nitrate reductase)	peg	gi|49175990|ref|NC_000913.2|_2298282_2297587		periplasmic nitrate reductase subunit NapG		CDS	mauM/NapG ferredoxin-type family protein			
-	2298289	2300775	2487	Periplasmic nitrate reductase precursor (EC 1.7.99.4)	peg	gi|49175990|ref|NC_000913.2|_2300775_2298289		periplasmic nitrate reductase subunit NapA apoprotein	1.7.99.4	CDS	periplasmic nitrate reductase, large subunit	1.7.99.4	napA	
-	2300772	2301035	264	Periplasmic nitrate reductase component NapD	peg	gi|49175990|ref|NC_000913.2|_2301035_2300772		periplasmic nitrate reductase chaperone NapD		CDS	napD family protein			
-	2301025	2301519	495	Ferredoxin-type protein NapF (periplasmic nitrate reductase)	peg	gi|49175990|ref|NC_000913.2|_2301519_2301025		periplasmic nitrate reductase maturation protein NapF		CDS	ferredoxin-type protein NapF		napF	
+	2301628	2301792	165	FIG00640962: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2301628_2301792		hypothetical protein		CDS	putative triose phosphate isomerase monomer			
+	2301927	2302415	489	"Proteinase inhibitor I11, ecotin precursor"	peg	gi|49175990|ref|NC_000913.2|_2301927_2302415		Serine protease inhibitor ecotin		CDS	ecotin family protein			
-	2303130	2304776	1647	Malate:quinone oxidoreductase (EC 1.1.5.4)	peg	gi|49175990|ref|NC_000913.2|_2304776_2303130		malate:quinone-oxidoreductase	1.1.5.4	CDS	malate dehydrogenase	1.1.5.4	mqo	
-	2304994	2306637	1644	Putative ATP-binding component of a transport system	peg	gi|49175990|ref|NC_000913.2|_2306637_2304994		cyclic peptide transporter		CDS	ABC transporter ATP-binding protein YojI		yojI	
-	2306713	2307363	651	Alkylated DNA repair protein AlkB	peg	gi|49175990|ref|NC_000913.2|_2307363_2306713		DNA-N1-methyladenine dioxygenase (EC 1.14.11.-)	1.14.11.-	CDS	alkylated DNA repair protein AlkB		alkB	
-	2307363	2308427	1065	ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)	peg	gi|49175990|ref|NC_000913.2|_2308427_2307363		DNA-O6-methylguanine--protein-cysteine S-methyltransferase (EC 2.1.1.63)/Transcriptional regulator Ada	2.1.1.63	CDS	bifunctional transcriptional activator/DNA repair enzyme Ada	2.1.1.63	ada	
-	2308501	2309556	1056	Thiamin biosynthesis lipoprotein ApbE	peg	gi|49175990|ref|NC_000913.2|_2309556_2308501		Membrane-associated lipoprotein involved in thiamine biosynthesis		CDS	thiamine biosynthesis lipoprotein ApbE		apbE	
-	2309668	2310771	1104	Outer membrane protein C precursor	peg	gi|49175990|ref|NC_000913.2|_2310771_2309668		Outer membrane protein (porin)		CDS	outer membrane protein C		ompC	
+	2311510	2314182	2673	Two-component sensor protein RcsD (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_2311510_2314182		Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Hpt domain.	2.7.13.3	CDS	sensor-like histidine kinase RcsD	2.7.13.3	rcsD	
+	2314199	2314849	651	DNA-binding capsular synthesis response regulator RcsB	peg	gi|49175990|ref|NC_000913.2|_2314199_2314849		two component transcriptional regulator, LuxR family		CDS	capsular synthesis regulator component B		rcsB	
-	2315049	2317898	2850	Two-component sensor protein RcsC (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_2317898_2315049		Signal transduction histidine kinase	2.7.13.3	CDS	sensor kinase protein RcsC	2.7.13.3	rcsC	
+	2318065	2319891	1827	Sensory histidine kinase AtoS	peg	gi|49175990|ref|NC_000913.2|_2318065_2319891		PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	sensory box protein			
+	2319888	2321273	1386	Acetoacetate metabolism regulatory protein AtoC	peg	gi|49175990|ref|NC_000913.2|_2319888_2321273		Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	AAA domain family protein			
+	2321469	2322131	663	"Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8)"	peg	gi|49175990|ref|NC_000913.2|_2321469_2322131		3-oxoacid CoA-transferase, A subunit	2.8.3.8	CDS	acetate CoA-transferase subunit alpha	2.8.3.8	atoD	
+	2322131	2322781	651	"Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit (EC 2.8.3.8)"	peg	gi|49175990|ref|NC_000913.2|_2322131_2322781		3-oxoacid CoA-transferase, B subunit		CDS	acetate CoA-transferase subunit beta	2.8.3.8	atoA	
+	2322778	2324100	1323	Short chain fatty acids transporter	peg	gi|49175990|ref|NC_000913.2|_2322778_2324100		TIGR00366 family protein		CDS	short-chain fatty acids transporter		atoE	
+	2324131	2325315	1185	Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg	gi|49175990|ref|NC_000913.2|_2324131_2325315		acetyl-CoA acetyltransferase (EC 2.3.1.9)	2.3.1.9	CDS	acetyl-CoA C-acetyltransferase family protein			
-	2325389	2326165	777	FIG00638718: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2326165_2325389		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2326170	2327819	1650	FIG00638358: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2327819_2326170		Predicted secreted protein		CDS	stage II sporulation family protein			
-	2327820	2328305	486	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_2328305_2327820		hypothetical protein		CDS	alpha-2-macroglobulin family domain protein			
-	2328321	2332334	4014	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_2332334_2328321		Large extracellular alpha-helical protein		CDS	alpha-2-macroglobulin N-terminal region family protein			
-	2332358	2332981	624	FIG00638487: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2332981_2332358		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2332978	2334666	1689	FIG00638699: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2334666_2332978		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2334815	2337442	2628	DNA gyrase subunit A (EC 5.99.1.3)	peg	gi|49175990|ref|NC_000913.2|_2337442_2334815		DNA gyrase subunit A (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase, A subunit	5.99.1.3	gyrA	
+	2337589	2338311	723	3-demethylubiquinol 3-O-methyltransferase (EC 2.1.1.64)	peg	gi|49175990|ref|NC_000913.2|_2337589_2338311		3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)		CDS	3-demethylubiquinone-9 3-O-methyltransferase	2.1.1.64	ubiG	
-	2338439	2342143	3705	"COG3468: Type V secretory pathway, adhesin AidA"	peg	gi|49175990|ref|NC_000913.2|_2342143_2338439		outer membrane autotransporter barrel domain/autotransporter-associated beta strand repeat		CDS	outer membrane autotransporter barrel domain protein			
+	2342887	2345172	2286	"Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)"	peg	gi|49175990|ref|NC_000913.2|_2342887_2345172		ribonucleoside-diphosphate reductase class Ia alpha subunit (EC 1.17.4.1)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		
+	2345355	2346536	1182	"Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)"	peg	gi|49175990|ref|NC_000913.2|_2345355_2346536		ribonucleoside-diphosphate reductase class Ia beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase 1 subunit beta	1.17.4.1	nrdB	
+	2346536	2346790	255	FIG001676: Ferredoxin	peg	gi|49175990|ref|NC_000913.2|_2346536_2346790		Ferredoxin		CDS	2Fe-2S iron-sulfur cluster binding domain protein			
-	2346844	2347494	651	Protein inaA	peg	gi|49175990|ref|NC_000913.2|_2347494_2346844		Lipopolysaccharide kinase (Kdo/WaaP) family.		CDS	protein inaA		inaA	
+	2347709	2347915	207	LysR family transcriptional regulator STM2281	peg	gi|49175990|ref|NC_000913.2|_2347709_2347915		hypothetical protein		CDS	conserved hypothetical protein			
-	2347957	2349033	1077	"Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)"	peg	gi|49175990|ref|NC_000913.2|_2349033_2347957		Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	glycerophosphoryl diester phosphodiesterase	3.1.4.46	glpQ	
-	2349038	2350396	1359	Glycerol-3-phosphate transporter	peg	gi|49175990|ref|NC_000913.2|_2350396_2349038		glycerol-3-phosphate transporter		CDS	glycerol-3-phosphate transporter		glpT	
+	2350669	2352297	1629	Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_2350669_2352297		glycerol 3-phosphate dehydrogenase (quinone) subunit A (EC 1.1.5.3)	1.1.5.3	CDS	glycerol-3-phosphate dehydrogenase, anaerobic, A subunit	1.1.5.3	glpA	
+	2352287	2353546	1260	Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_2352287_2353546		glycerol 3-phosphate dehydrogenase (quinone) subunit B (EC 1.1.5.3)	1.1.5.3	CDS	glycerol-3-phosphate dehydrogenase, anaerobic, B subunit	1.1.5.3	glpB	
+	2353543	2354733	1191	Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_2353543_2354733		glycerol 3-phosphate dehydrogenase (quinone) subunit C (EC 1.1.5.3)	1.1.5.3	CDS	glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	1.1.5.3	glpC	
+	2354926	2355825	900	Uncharacterized protein YfaD	peg	gi|49175990|ref|NC_000913.2|_2354926_2355825		conserved hypothetical protein (putative transposase or invertase)		CDS	conserved hypothetical family protein			
+	2355838	2356023	186	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2355838_2356023		hypothetical protein		CDS	conserved hypothetical protein			
-	2356064	2356867	804	"COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase"	peg	gi|49175990|ref|NC_000913.2|_2356867_2356064		2,4-dihydroxyhept-2-enedioate aldolase (EC 4.1.2.-)	4.1.2.-	CDS	2-keto-3-deoxy-L-rhamnonate aldolase	4.1.2.n3	rhmA	
-	2356885	2358174	1290	L-rhamnonate transporter (predicted by genome context)	peg	gi|49175990|ref|NC_000913.2|_2358174_2356885		Sugar phosphate permease		CDS	inner membrane transport protein RhmT		rhmT	
-	2358231	2359436	1206	L-rhamnonate dehydratase (EC 4.2.1.90)	peg	gi|49175990|ref|NC_000913.2|_2359436_2358231		L-rhamnonate dehydratase (EC 4.2.1.90)	4.2.1.90	CDS	L-rhamnonate dehydratase	4.2.1.90	rhmD	
-	2359451	2360233	783	putative regulator	peg	gi|49175990|ref|NC_000913.2|_2360233_2359451		transcriptional regulator, IclR family		CDS	conserved hypothetical protein			
-	2360453	2361655	1203	COG1058: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA	peg	gi|49175990|ref|NC_000913.2|_2361655_2360453		molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain		CDS	cinA-like protein		yfaY	
-	2361755	2362297	543	Uncharacterized protein YfaZ precursor	peg	gi|49175990|ref|NC_000913.2|_2362297_2361755		YfaZ precursor.		CDS	yfaZ family protein			
+	2362576	2363001	426	Pyrimidine deoxynucleoside triphosphate (dYTP) pyrophosphohydrolase YfoO	peg	gi|49175990|ref|NC_000913.2|_2362639_2363001		ADP-ribose pyrophosphatase	3.6.1.-	CDS	NUDIX domain protein			
-	2363040	2363642	603	Polymyxin resistance protein PmrG; Ais protein	peg	gi|49175990|ref|NC_000913.2|_2363642_2363040		Fructose-2,6-bisphosphatase		CDS	histidine phosphatase super family protein			
+	2363932	2365089	1158	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_2363932_2365089		Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis	2.6.1.87	CDS	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase	2.6.1.87	arnB	
+	2365093	2366061	969	"Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-)"	peg	gi|49175990|ref|NC_000913.2|_2365093_2366061		Glycosyltransferases involved in cell wall biogenesis	2.7.8.30	CDS	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	2.7.8.30	arnC	
+	2366061	2368043	1983	"Polymyxin resistance protein ArnA_DH, UDP-glucuronic acid decarboxylase (EC 4.1.1.-) / Polymyxin resistance protein ArnA_FT, UDP-4-amino-4-deoxy-L-arabinose formylase (EC 2.1.2.-)"	peg	gi|49175990|ref|NC_000913.2|_2366061_2368043		Methionyl-tRNA formyltransferase	2.1.2.13, 1.1.1.305	CDS	bifunctional polymyxin resistance protein ArnA	1.1.1.305	arnA	
+	2368040	2368930	891	"Polymyxin resistance protein PmrJ, predicted deacetylase"	peg	gi|49175990|ref|NC_000913.2|_2368040_2368930		Predicted xylanase/chitin deacetylase	3.5.-	CDS	putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD			
+	2368930	2370582	1653	"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"	peg	gi|49175990|ref|NC_000913.2|_2368930_2370582		4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	2.4.2.43	CDS	undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase	2.4.2.43	arnT	
+	2370579	2370914	336	"Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase"	peg	gi|49175990|ref|NC_000913.2|_2370579_2370914		Membrane transporters of cations and cationic drugs		CDS	putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE			
-	2371294	2371560	267	Polymyxin resistance protein PmrD	peg	gi|49175990|ref|NC_000913.2|_2371560_2371294		Polymyxin resistance protein PmrD.		CDS	signal transduction protein pmrD		pmrD	
+	2370914	2371300	387	Polymyxin resistance protein PmrM	peg	gi|49175990|ref|NC_000913.2|_2370914_2371300		hypothetical protein		CDS	putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF			
-	2371670	2373025	1356	O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)	peg	gi|49175990|ref|NC_000913.2|_2373025_2371670		2-succinylbenzoyl-CoA synthetase (EC 6.2.1.26)	6.2.1.26	CDS	O-succinylbenzoate-CoA ligase	6.2.1.26	menE	
-	2373022	2373984	963	O-succinylbenzoate synthase (EC 4.2.1.113)	peg	gi|49175990|ref|NC_000913.2|_2373984_2373022		O-succinylbenzoate synthase (EC 4.2.1.113)	4.2.1.113	CDS	o-succinylbenzoate synthase	4.2.1.113	menC	
-	2373984	2374841	858	Naphthoate synthase (EC 4.1.3.36)	peg	gi|49175990|ref|NC_000913.2|_2374841_2373984		1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36)	4.1.3.36	CDS	naphthoate synthase	4.1.3.36	menB	
-	2374856	2375614	759	"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)"	peg	gi|49175990|ref|NC_000913.2|_2375614_2374856		2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)	4.2.99.20	CDS	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	4.2.99.20	menH	
-	2375611	2377281	1671	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)	peg	gi|49175990|ref|NC_000913.2|_2377281_2375611		2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC 2.2.1.9)	2.2.1.9	CDS	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	2.2.1.9	menD	
-	2377370	2378665	1296	Menaquinone-specific isochorismate synthase (EC 5.4.4.2)	peg	gi|49175990|ref|NC_000913.2|_2378665_2377370		isochorismate synthase (EC 5.4.4.2)	5.4.4.2	CDS	menaquinone-specific isochorismate synthase	5.4.4.2	menF	
-	2378744	2379049	306	ElaB protein	peg	gi|49175990|ref|NC_000913.2|_2379049_2378744		Uncharacterized conserved protein		CDS	protein elaB		elaB	
-	2379104	2379565	462	ElaA protein	peg	gi|49175990|ref|NC_000913.2|_2379565_2379104		Predicted acyltransferase		CDS	acetyltransferase family protein			
+	2379612	2380547	936	Ribonuclease Z (EC 3.1.26.11)	peg	gi|49175990|ref|NC_000913.2|_2379612_2380547		RNAse Z (EC 3.1.26.11)	3.1.26.11	CDS	ribonuclease Z	3.1.26.11	rnz	
+	2380738	2381946	1209	ElaD protein	peg	gi|49175990|ref|NC_000913.2|_2380738_2381946		Protease, Ulp1 family		CDS	protease elaD	3.4.22.-	elaD	
-	2382017	2383744	1728	FIG00637883: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2383744_2382017		Uncharacterized protein containing a von Willebrand factor type A (vWA) domain		CDS	conserved hypothetical protein			
+	2383882	2384853	972	FIG00639255: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2383882_2384853		Predicted aminopeptidases		CDS	peptidase M20/M25/M40 family protein			
+	2384956	2385459	504	FIG00638014: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2384956_2385459		Domain of unknown function (DUF1877).		CDS	protein yfbM		yfbM	
-	2385732	2386448	717	FIG00640159: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2386448_2385732		hypothetical protein		CDS	conserved hypothetical protein			
+	2386603	2387079	477	FIG00640594: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2386603_2387079		hypothetical protein		CDS	conserved hypothetical protein			
+	2387138	2387986	849	FIG00639247: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2387138_2387986		Thioredoxin domain-containing protein		CDS	tetratricopeptide repeat family protein			
-	2388070	2389527	1458	NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2389527_2388070		NADH dehydrogenase subunit N (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit N	1.6.99.5	nuoN	
-	2389534	2391063	1530	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2391063_2389534		NADH dehydrogenase subunit M (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit M	1.6.99.5	nuoM	
-	2391227	2393068	1842	NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2393062_2391227		NADH dehydrogenase subunit L (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit L	1.6.99.5	nuoL	
-	2393065	2393367	303	NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2393367_2393065		NADH dehydrogenase subunit K (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit K	1.6.99.5	nuoK	
-	2393364	2393918	555	NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2393918_2393364		NADH dehydrogenase subunit J (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit J	1.6.99.5	nuoJ	
-	2393930	2394472	543	NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2394472_2393930		NADH dehydrogenase subunit I (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase, chain I family protein			
-	2394487	2395464	978	NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2395464_2394487		NADH dehydrogenase subunit H (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit H	1.6.99.5	nuoH	
-	2395461	2398187	2727	NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2398187_2395461		NADH dehydrogenase subunit G (EC 1.6.5.3)	1.6.5.3	CDS	NADH dehydrogenase (quinone), G subunit	1.6.99.5	nuoG	
-	2398240	2399577	1338	NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2399577_2398240		NADH dehydrogenase subunit F (EC 1.6.5.3)	1.6.5.3	CDS	NADH oxidoreductase (quinone), F subunit	1.6.99.5	nuoF	
-	2399574	2400074	501	NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2400074_2399574		NADH dehydrogenase subunit E (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit E	1.6.99.5	nuoE	
-	2400077	2401879	1803	NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2401879_2400077		NADH dehydrogenase subunit C (EC 1.6.5.3)/NADH dehydrogenase subunit D (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit C/D	1.6.99.5	nuoC	
-	2401973	2402635	663	NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2402635_2401973		NADH dehydrogenase subunit B (EC 1.6.5.3)	1.6.5.3	CDS	NADH-quinone oxidoreductase subunit B	1.6.99.5	nuoB	
-	2402651	2403094	444	NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)	peg	gi|49175990|ref|NC_000913.2|_2403094_2402651		NADH dehydrogenase subunit A (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein			
+	2403357	2403521	165				hypothetical protein		CDS				
-	2403725	2404663	939	LysR family transcriptional regulator lrhA	peg	gi|49175990|ref|NC_000913.2|_2404663_2403725		Transcriptional regulator		CDS	transcriptional regulator LrhA		lrhA	
+	2405583	2406800	1218	Alanine transaminase (EC 2.6.1.2)	peg	gi|49175990|ref|NC_000913.2|_2405583_2406800		Aspartate/tyrosine/aromatic aminotransferase	2.6.1.2, 2.6.1.66	CDS	conserved hypothetical protein			
+	2406884	2407483	600	"Nucleotidase YfbR, HD superfamily"	peg	gi|49175990|ref|NC_000913.2|_2406884_2407483		Predicted hydrolases of HD superfamily	3.1.3.5	CDS	5'-nucleotidase yfbR	3.1.3.5	yfbR	
-	2407542	2409374	1833	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_2409374_2407542		Di- and tricarboxylate transporters		CDS	citrate transporter family protein			
-	2409461	2410111	651	Putative phosphatase YfbT	peg	gi|49175990|ref|NC_000913.2|_2410111_2409461		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	HAD hydrolase, IA, variant 1 family protein			
-	2410122	2410616	495	FIG00361523: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2410616_2410122		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	2410699	2411154	456	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2411154_2410699		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2411492	2412694	1203	Acetate kinase (EC 2.7.2.1)	peg	gi|49175990|ref|NC_000913.2|_2411492_2412694		acetate kinase (EC 2.7.2.1)	2.7.2.1	CDS	acetate kinase	2.7.2.1	ackA	
+	2412769	2414913	2145	Phosphate acetyltransferase (EC 2.3.1.8)	peg	gi|49175990|ref|NC_000913.2|_2412769_2414913		phosphotransacetylase (EC 2.3.1.8)	2.3.1.8	CDS	phosphate acetyltransferase	2.3.1.8	pta	
+	2415145	2416623	1479	Putative S-transferase	peg	gi|49175990|ref|NC_000913.2|_2415145_2416623		Predicted membrane protein		CDS	C4-dicarboxylate anaerobic carrier family protein			
-	2416656	2417198	543	Putative Nudix hydrolase YfcD (EC 3.6.-.-)	peg	gi|49175990|ref|NC_000913.2|_2417198_2416656		Isopentenyldiphosphate isomerase		CDS	conserved hypothetical protein			
-	2417256	2417807	552	Phosphodiesterase yfcE (EC 3.1.4.-)	peg	gi|49175990|ref|NC_000913.2|_2417807_2417256		phosphoesterase, MJ0936 family		CDS	phosphodiesterase yfcE	3.1.4.-	yfcE	
-	2417863	2418507	645	"Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog"	peg	gi|49175990|ref|NC_000913.2|_2418507_2417863		Glutathione S-transferase		CDS	conserved hypothetical protein			
+	2418643	2419290	648	"Probable glutathione S-transferase (EC 2.5.1.18), YfcG homolog"	peg	gi|49175990|ref|NC_000913.2|_2418643_2419290		Glutathione S-transferase	2.5.1.18	CDS	putative disulfide bond reductase yfcG			
+	2419347	2419709	363	Dihydroneopterin triphosphate epimerase	peg	gi|49175990|ref|NC_000913.2|_2419347_2419709		FolB domain	5.-	CDS	D-erythro-7,8-dihydroneopterin triphosphate epimerase	5.-.-.-	folX	
+	2419730	2420623	894	"Cell division inhibitor Slr1223 (YfcH in EC), contains epimerase/dehydratase and DUF1731 domains"	peg	gi|49175990|ref|NC_000913.2|_2419730_2420623		TIGR01777 family protein		CDS	NAD dependent epimerase/dehydratase family protein			
-	2420671	2421561	891	COG1196: Chromosome segregation ATPases	peg	gi|49175990|ref|NC_000913.2|_2421561_2420671		conserved hypothetical protein (putative transposase or invertase)		CDS	conserved hypothetical family protein			
-	2421758	2422531	774	"Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1)"	peg	gi|49175990|ref|NC_000913.2|_2422531_2421758		L-histidine ABC transporter ATP-binding protein/L-arginine ABC transporter ATP-binding protein/L-lysine ABC transporter ATP-binding protein/L-ornithine ABC transporter ATP-binding protein	3.6.3.21	CDS	ABC transporter family protein			
-	2422539	2423255	717	"Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1)"	peg	gi|49175990|ref|NC_000913.2|_2423255_2422539		L-histidine ABC transporter membrane protein/L-arginine ABC transporter membrane protein/L-lysine ABC transporter membrane protein/L-ornithine ABC transporter membrane protein		CDS	histidine transport system permease protein hisM		hisM	
-	2423252	2423938	687	"Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1)"	peg	gi|49175990|ref|NC_000913.2|_2423938_2423252		L-histidine ABC transporter membrane protein/L-arginine ABC transporter membrane protein/L-lysine ABC transporter membrane protein/L-ornithine ABC transporter membrane protein		CDS	histidine transport system permease protein hisQ		hisQ	
-	2424028	2424810	783	"Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1)"	peg	gi|49175990|ref|NC_000913.2|_2424810_2424028		L-histidine-binding protein		CDS	histidine-binding periplasmic protein		hisJ	
-	2425031	2425813	783	Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)	peg	gi|49175990|ref|NC_000913.2|_2425813_2425031		L-arginine-binding protein/L-lysine-binding protein/L-ornithine-binding protein		CDS	lysine-arginine-ornithine-binding periplasmic protein		argT	
-	2426079	2426648	570	3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_2426648_2426079		3-octaprenyl-4hydroxybenzoate decarboxylase (EC 4.1.1.-)	4.1.1.-	CDS	polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein	4.1.1.-		
-	2426743	2428260	1518	Amidophosphoribosyltransferase (EC 2.4.2.14)	peg	gi|49175990|ref|NC_000913.2|_2428260_2426743		amidophosphoribosyltransferase (EC 2.4.2.14)	2.4.2.14	CDS	amidophosphoribosyltransferase	2.4.2.14	purF	
-	2428297	2428785	489	Colicin V production protein	peg	gi|49175990|ref|NC_000913.2|_2428785_2428297		Uncharacterized membrane protein, required for colicin V production		CDS	colicin V production protein		cvpA	
-	2429044	2429706	663	DedD protein	peg	gi|49175990|ref|NC_000913.2|_2429706_2429044		Uncharacterized protein conserved in bacteria		CDS	sporulation related domain protein			
-	2429696	2430964	1269	Dihydrofolate synthase (EC 6.3.2.12) / Folylpolyglutamate synthase (EC 6.3.2.17)	peg	gi|49175990|ref|NC_000913.2|_2430964_2429696		folylpolyglutamate synthase/dihydrofolate synthase	6.3.2.12, 6.3.2.17	CDS	bifunctional protein folC	6.3.2.12	folC	
-	2431034	2431948	915	Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)	peg	gi|49175990|ref|NC_000913.2|_2431948_2431034		acetyl-CoA carboxylase carboxyltransferase subunit alpha	6.4.1.2	CDS	acetyl-CoA carboxylase, carboxyl transferase, beta subunit	6.4.1.2	accD	
-	2432104	2432763	660	DedA protein	peg	gi|49175990|ref|NC_000913.2|_2432763_2432104		Uncharacterized membrane-associated protein		CDS	protein dedA		dedA	
-	2432846	2433658	813	tRNA pseudouridine synthase A (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_2433658_2432846		pseudouridylate synthase I	5.4.99.12	CDS	tRNA pseudouridine(38-40) synthase	5.4.99.12	truA	
-	2433658	2434671	1014	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	peg	gi|49175990|ref|NC_000913.2|_2434671_2433658		Aspartate-semialdehyde dehydrogenase		CDS	semialdehyde dehydrogenase, NAD binding domain protein			
-	2434737	2435873	1137	Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)	peg	gi|49175990|ref|NC_000913.2|_2435873_2434737		4-phosphoerythronate dehydrogenase (EC 1.1.1.290)	1.1.1.290	CDS	erythronate-4-phosphate dehydrogenase	1.1.1.290	pdxB	
-	2436964	2438142	1179	"Transporter, putative"	peg	gi|49175990|ref|NC_000913.2|_2438142_2436964		Arabinose efflux permease		CDS	conserved hypothetical protein			
+	2435972	2436967	996	Cell division protein	peg	gi|49175990|ref|NC_000913.2|_2435972_2436967		hypothetical protein		CDS	flagellar regulator flk		flk	
-	2438407	2439627	1221	"3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)"	peg	gi|49175990|ref|NC_000913.2|_2439627_2438407		3-oxoacyl-[acyl-carrier-protein] synthase I (EC 2.3.1.41)	2.3.1.41	CDS	3-oxoacyl-[acyl-carrier-protein] synthase 1	2.3.1.41	fabB	
+	2439786	2441792	2007	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_2439786_2441792		tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain	1.5.-, 2.1.1.61	CDS	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC	1.5.-.-	mnmC	
-	2441913	2442191	279	FIG00639460: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2442191_2441913		YfcL protein.		CDS	yfcL family protein			
-	2442225	2442773	549	Putative transporting ATPase	peg	gi|49175990|ref|NC_000913.2|_2442773_2442225		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2442773	2443582	810	Putative membrane protein YfcA	peg	gi|49175990|ref|NC_000913.2|_2443582_2442773		Predicted permeases		CDS	conserved hypothetical protein			
-	2443582	2444406	825	Murein endopeptidase	peg	gi|49175990|ref|NC_000913.2|_2444406_2443582		murein endopeptidase. Metallo peptidase. MEROPS family M74	3.4.24.-	CDS	penicillin-insensitive murein endopeptidase	3.4.24.-	mepA	
-	2444410	2445495	1086	Chorismate synthase (EC 4.2.3.5)	peg	gi|49175990|ref|NC_000913.2|_2445495_2444410		chorismate synthase (EC 4.2.3.5)	4.2.3.5	CDS	chorismate synthase	4.2.3.5	aroC	
-	2445530	2446462	933	"Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p"	peg	gi|49175990|ref|NC_000913.2|_2446462_2445530		[LSU ribosomal protein L3P]-glutamine N5-methyltransferase (EC 2.1.1.-)	2.1.1.72	CDS	-(glutamine-N5) methyltransferase, ribosomal protein L3-specific	2.1.1.-	prmB	
+	2446628	2447179	552	FIG001674: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2446628_2447179		Uncharacterized protein conserved in bacteria		CDS	smr domain protein			
-	2447250	2448071	822	Uncharacterized protein YadU in stf fimbrial cluster	peg	gi|49175990|ref|NC_000913.2|_2448071_2447250		Protein of unknown function (DUF2544).		CDS	conserved hypothetical protein			
-	2448073	2448612	540	Minor fimbrial subunit StfG	peg	gi|49175990|ref|NC_000913.2|_2448612_2448073		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	2448609	2449097	489	Minor fimbrial subunit StfF	peg	gi|49175990|ref|NC_000913.2|_2449097_2448609		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	2449094	2449606	513	predicted fimbrial-like adhesin protein	peg	gi|49175990|ref|NC_000913.2|_2449510_2449094		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	2449606	2450358	753	Periplasmic fimbrial chaperone StfD	peg	gi|49175990|ref|NC_000913.2|_2450358_2449606		P pilus assembly protein, chaperone PapD		CDS	gram-negative pili assembly chaperone, C-terminal domain protein			
-	2450378	2451274	897	Fimbriae usher protein StfC	peg	gi|49175990|ref|NC_000913.2|_2451274_2450378		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
-	2451287	2453023	1737	Fimbriae usher protein StfC	peg	gi|49175990|ref|NC_000913.2|_2453023_2451287		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
-	2453105	2453668	564	Major fimbrial subunit StfA	peg	gi|49175990|ref|NC_000913.2|_2453668_2453105		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	2454349	2454834	486	Phosphohistidine phosphatase SixA	peg	gi|49175990|ref|NC_000913.2|_2454834_2454349		phosphohistidine phosphatase, SixA	3.1.3.-	CDS	phosphohistidine phosphatase SixA	3.1.3.-	sixA	
-	2455037	2457181	2145	Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	peg	gi|49175990|ref|NC_000913.2|_2457181_2455037		fatty oxidation complex, alpha subunit FadJ	1.1.1.35, 4.2.1.17, 5.1.2.3	CDS	fatty oxidation complex, alpha subunit FadJ	4.2.1.17	fadJ	
-	2457181	2458491	1311	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg	gi|49175990|ref|NC_000913.2|_2458491_2457181		3-ketoacyl-CoA thiolase (EC 2.3.1.16)		CDS	acetyl-CoA C-acyltransferase FadI	2.3.1.16	fadI	
-	2458672	2458956	285	FIG00637865: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2458956_2458672		conserved hypothetical protein		CDS	conserved hypothetical family protein			
+	2459328	2460668	1341	Long-chain fatty acid transport protein	peg	gi|49175990|ref|NC_000913.2|_2459328_2460668		Long-chain fatty acid transport protein		CDS	outer membrane transport family protein			
+	2461034	2462092	1059	FIG00639023: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2461034_2462092		hypothetical protein		CDS	conserved hypothetical protein			
-	2462274	2463029	756	Lipoprotein	peg	gi|49175990|ref|NC_000913.2|_2463029_2462274		Surface lipoprotein		CDS	putative phospholipid-binding lipoprotein mlaA			
+	2463323	2464255	933	putative transport	peg	gi|49175990|ref|NC_000913.2|_2463323_2464255		Formate/nitrite family of transporters		CDS	inner membrane protein yfdC		yfdC	
+	2464567	2465724	1158	putative prophage Sf6-like integrase	peg	gi|49175990|ref|NC_000913.2|_2464567_2465724		Integrase		CDS	putative prophage CPS-53 integrase			
+	2466236	2467156	921	Bactoprenol glucosyl transferase GtrB (EC 2.4.1.-)	peg	gi|49175990|ref|NC_000913.2|_2466236_2467156		Glycosyltransferases involved in cell wall biogenesis		CDS	conserved hypothetical protein			
+	2467153	2468484	1332	putative ligase	peg	gi|49175990|ref|NC_000913.2|_2467153_2468484		hypothetical protein		CDS	putative membrane protein			
-	2469099	2469539	441	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2469491_2469099		Caudovirales tail fibre assembly protein.		CDS	caudovirales tail fibre assembly family protein			
+	2468825	2469127	303	Tail fiber assembly protein	peg	gi|49175990|ref|NC_000913.2|_2468825_2469127		Caudovirales tail fibre assembly protein.		CDS	caudovirales tail fibre assembly family protein			
-	2469566	2470168	603	Phage tail fiber protein	peg	gi|49175990|ref|NC_000913.2|_2470159_2469566		hypothetical protein		CDS	conserved hypothetical protein			
-	2470134	2470409	276	DNA adenine methylase	peg	gi|49175990|ref|NC_000913.2|_2470409_2470134		phage N-6-adenine-methyltransferase		CDS	phage N-6-adenine-methyltransferase	2.1.1.72		
-	2470409	2470903	495				PerC transcriptional activator.		CDS	perC transcriptional activator family protein			
-	2470900	2471268	369	Primosomal protein I	peg	gi|49175990|ref|NC_000913.2|_2471268_2470900		hypothetical protein		CDS	conserved hypothetical protein			
-	2471418	2471591	174	FIG00644878: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2471591_2471418					putative phage O domain protein			
+	2471626	2471988	363	FIG00638873: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2471626_2471988		hypothetical protein		CDS	conserved hypothetical protein			
+	2472054	2472878	825	FIG00642676: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2472054_2472878		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2473006	2473542	537	Hypothetical protein yfdR	peg	gi|49175990|ref|NC_000913.2|_2473006_2473542		Predicted hydrolases of HD superfamily		CDS	conserved hypothetical protein			
+	2473533	2473895	363	Eae protein	peg	gi|49175990|ref|NC_000913.2|_2473554_2473895		hypothetical protein		CDS	conserved hypothetical protein			
+	2473895	2474200	306	FIG00643426: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2473895_2474200		hypothetical protein		CDS	conserved hypothetical protein			
+	2474332	2474532	201	Gene 18 protein	peg	gi|49175990|ref|NC_000913.2|_2474332_2474532		transcriptional regulator, AlpA family		CDS	prophage CP4-57 regulatory family protein			
-	2474716	2475651	936	D-serine dehydratase transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_2475651_2474716		D-serine deaminase transcriptional activator		CDS	D-serine deaminase transcriptional activator		dsdC	
+	2475869	2477206	1338	D-serine permease DsdX	peg	gi|49175990|ref|NC_000913.2|_2475869_2477206		D-serine permease DsdX (TC 2.A.8.1.5)		CDS	dsdX permease		dsdX	
+	2477224	2478552	1329	D-serine dehydratase (EC 4.3.1.18)	peg	gi|49175990|ref|NC_000913.2|_2477239_2478552		D-serine ammonia-lyase (EC 4.3.1.18)	4.3.1.18	CDS	D-serine ammonia-lyase	4.3.1.18	dsdA	
-	2478660	2480198	1539	Inner membrane component of tripartite multidrug resistance system	peg	gi|49175990|ref|NC_000913.2|_2480198_2478660		drug resistance transporter, EmrB/QacA subfamily		CDS	multidrug resistance protein B		emrB	
-	2480198	2481361	1164	Membrane fusion component of tripartite multidrug resistance system	peg	gi|49175990|ref|NC_000913.2|_2481361_2480198		efflux pump membrane protein (multidrug resistance protein A)		CDS	efflux pump membrane family protein			
+	2481777	2482391	615	Positive transcription regulator EvgA	peg	gi|49175990|ref|NC_000913.2|_2481777_2482391		two component transcriptional regulator, LuxR family		CDS	positive transcription regulator evgA		evgA	
+	2482396	2485989	3594	Hybrid sensory histidine kinase in two-component regulatory system with EvgA	peg	gi|49175990|ref|NC_000913.2|_2482606_2485989		amino acid-binding domain sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	sensor protein evgS	2.7.13.3	evgS	
-	2486045	2487190	1146	YfdE protein	peg	gi|49175990|ref|NC_000913.2|_2487190_2486045		Predicted acyl-CoA transferases/carnitine dehydratase		CDS	coA-transferase III family protein			
-	2487264	2488208	945	putative receptor protein	peg	gi|49175990|ref|NC_000913.2|_2488208_2487264		Predicted permeases		CDS	membrane transport family protein			
-	2488278	2489972	1695	Oxalyl-CoA decarboxylase (EC 4.1.1.8)	peg	gi|49175990|ref|NC_000913.2|_2489972_2488278		oxalyl-CoA decarboxylase	4.1.1.8	CDS	oxalyl-CoA decarboxylase	4.1.1.8	oxc	
-	2490026	2491276	1251	Formyl-coenzyme A transferase (EC 2.8.3.16)	peg	gi|49175990|ref|NC_000913.2|_2491204_2490026		formyl-CoA transferase	2.8.3.16	CDS	formyl-CoA transferase	2.8.3.16	frc	
-	2491789	2492424	636	FIG00638143: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2492424_2491789		YfdX protein.		CDS	protein yfdX		yfdX	
+	2492720	2492995	276				hypothetical protein		CDS				
-	2493072	2493314	243	FIG00638164: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2493314_2493072		Protein of unknown function (DUF2545).		CDS	conserved hypothetical protein			
+	2493667	2494587	921	Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_2493667_2494587		lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	2.3.1.-	CDS	lipid A biosynthesis lauroyl acyltransferase	2.3.1.-	htrB	
-	2495079	2496317	1239	Uncharacterized PLP-dependent aminotransferase YfdZ	peg	gi|49175990|ref|NC_000913.2|_2496317_2495079		Aspartate/tyrosine/aromatic aminotransferase	2.6.1.-	CDS	aminotransferase class I and II family protein			
+	2496693	2498390	1698	Autolysis histidine kinase LytS	peg	gi|49175990|ref|NC_000913.2|_2496711_2498390		Putative regulator of cell autolysis	2.7.13.3	CDS	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			
+	2498405	2499139	735	Hypothetical response regulatory protein ypdB	peg	gi|49175990|ref|NC_000913.2|_2498405_2499139		two component transcriptional regulator, LytTR family		CDS	response regulator		ypdB	
+	2499152	2500009	858	Putative HTH-type transcriptional regulator ypdC	peg	gi|49175990|ref|NC_000913.2|_2499152_2500009		transcriptional regulator, AraC family		CDS	conserved hypothetical protein			
-	2500012	2502507	2496	Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	peg	gi|49175990|ref|NC_000913.2|_2502507_2500012		phosphoenolpyruvate-protein phosphotransferase	2.7.1.69	CDS	multiphosphoryl transfer protein 1	2.7.1.-	fryA	
-	2502532	2503569	1038	Nondeblocking aminopeptidase YpdE (X-X-[^PR]- specific)	peg	gi|49175990|ref|NC_000913.2|_2503569_2502532		Cellulase M and related proteins		CDS	aminopeptidase ypdE	3.4.11.-	ypdE	
-	2503569	2504654	1086	"Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)"	peg	gi|49175990|ref|NC_000913.2|_2504654_2503569		Xaa-Pro aminopeptidase	3.4.11.-	CDS	aminopeptidase ypdF	3.4.11.-	ypdF	
-	2504669	2505916	1248	"PTS system, fructose-specific IIBC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2505916_2504669		PTS system unknown substrate IIC component, Fru family (TC 4.A.2.1.11)		CDS	fructose-like permease IIC component 1		fryC	
-	2505938	2506264	327	"PTS system nitrogen-specific IIA component, PtsN"	peg	gi|49175990|ref|NC_000913.2|_2506264_2505938		PTS system unknown substrate IIB component, Fru family (TC 4.A.2.1.11)	2.7.1.69	CDS	fructose-like phosphotransferase enzyme IIB component 1	2.7.1.69	fryB	
-	2506483	2507448	966	Glucokinase (EC 2.7.1.2)	peg	gi|49175990|ref|NC_000913.2|_2507448_2506483		glucokinase (EC 2.7.1.2)	2.7.1.2	CDS	glucokinase	2.7.1.2	glk	
+	2507652	2508908	1257	Chloride channel protein	peg	gi|49175990|ref|NC_000913.2|_2507652_2508908		Chloride channel protein EriC		CDS	voltage gated chloride channel family protein			
+	2509023	2509349	327	FIG00639029: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2509023_2509349		Protein of unknown function (DUF2502).		CDS	conserved hypothetical protein			
-	2509490	2510728	1239	Manganese transport protein MntH	peg	gi|49175990|ref|NC_000913.2|_2510665_2509490		NRAMP (natural resistance-associated macrophage protein) metal ion transporters		CDS	manganese transport protein mntH		mntH	
+	2511064	2512266	1203	Nucleoside permease NupC	peg	gi|49175990|ref|NC_000913.2|_2511064_2512266		nucleoside transporter		CDS	nucleoside permease nupC		nupC	
+	2512353	2513465	1113	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2512353_2513465		FOG: Transposase and inactivated derivatives		CDS	transposase DDE domain protein			
-	2513665	2515854	2190	FIG00638309: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2515854_2513665		diguanylate cyclase/phosphodiesterase		CDS	EAL domain protein			
+	2516474	2516833	360	Putative negative regulator	peg	gi|49175990|ref|NC_000913.2|_2516489_2516833		Putative transcription regulator (DUF1323).		CDS	conserved hypothetical protein			
+	2516835	2517227	393	FIG00638165: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2516835_2517227		Putative transcription regulator (DUF1323).		CDS	helix-turn-helix family protein			
-	2517279	2518694	1416	Glutamyl-tRNA synthetase (EC 6.1.1.17)	peg	gi|49175990|ref|NC_000913.2|_2518694_2517279		glutamyl-tRNA synthetase (EC 6.1.1.17)	6.1.1.17	CDS	glutamate--tRNA ligase	6.1.1.17	gltX	
-	2519615	2520499	885	"Xanthosine operon regulatory protein XapR, LysR family"	peg	gi|49175990|ref|NC_000913.2|_2520499_2519615		transcriptional regulator, LysR family		CDS	HTH-type transcriptional regulator xapR		xapR	
-	2520540	2520698	159	FIG00638837: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2520698_2520540					xapX domain protein			
-	2520751	2522007	1257	Xanthosine permease	peg	gi|49175990|ref|NC_000913.2|_2522007_2520751		nucleoside transporter		CDS	xanthosine permease		xapB	
-	2522067	2522900	834	Xanthosine phosphorylase (EC 2.4.2.1)	peg	gi|49175990|ref|NC_000913.2|_2522900_2522067		xanthosine phosphorylase	2.4.2.-	CDS	xanthosine phosphorylase	2.4.2.1	xapA	
+	2523149	2523913	765	Putative exported protein precursor	peg	gi|49175990|ref|NC_000913.2|_2523149_2523913		Nucleoside-specific channel-forming protein, Tsx.		CDS	nucleoside-specific channel-forming , Tsx family protein			
-	2523952	2524878	927	LysR family transcriptional regulator YfeR	peg	gi|49175990|ref|NC_000913.2|_2524878_2523952		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	2525963	2526181	219	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_2526181_2525963		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2524968	2525966	999	Putative cytochrome oxidase	peg	gi|49175990|ref|NC_000913.2|_2524968_2525966		Predicted Na+-dependent transporter		CDS	conserved hypothetical protein			
-	2526183	2528198	2016	DNA ligase (EC 6.5.1.2)	peg	gi|49175990|ref|NC_000913.2|_2528198_2526183		DNA ligase, NAD-dependent	6.5.1.2	CDS	DNA ligase, NAD-dependent	6.5.1.2	ligA	
-	2528269	2529255	987	Cell division protein ZipA	peg	gi|49175990|ref|NC_000913.2|_2529255_2528269		cell division protein ZipA		CDS	cell division protein ZipA		zipA	
+	2529485	2530246	762	"Sulfate transporter, CysZ-type"	peg	gi|49175990|ref|NC_000913.2|_2529485_2530246		Uncharacterized protein involved in cysteine biosynthesis		CDS	protein CysZ		cysZ	
+	2530431	2531402	972	Cysteine synthase (EC 2.5.1.47)	peg	gi|49175990|ref|NC_000913.2|_2530431_2531402		cysteine synthase (EC 2.5.1.47)	2.5.1.47	CDS	cysteine synthase A	2.5.1.47	cysK	
+	2531786	2532043	258	"Phosphotransferase system, phosphocarrier protein HPr"	peg	gi|49175990|ref|NC_000913.2|_2531786_2532043		Phosphotransferase System HPr (HPr) Family		CDS	phosphocarrier protein HPr	2.7.11.-	ptsH	
+	2532088	2533815	1728	Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	peg	gi|49175990|ref|NC_000913.2|_2532088_2533815		phosphoenolpyruvate--protein phosphotransferase (EC 2.7.3.9)	2.7.3.9	CDS	phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	ptsI	
+	2533856	2534365	510	"PTS system, glucose-specific IIA component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2533856_2534365		PTS system D-glucose-specific IIA component, Glc family (TC 4.A.1.1.1)	2.7.1.69	CDS	glucose-specific phosphotransferase enzyme IIA component	2.7.1.-	crr	
-	2534408	2535259	852	Pyridoxal kinase (EC 2.7.1.35)	peg	gi|49175990|ref|NC_000913.2|_2535259_2534408		Pyridoxal kinase (EC 2.7.1.35)	2.7.1.35	CDS	pyridoxal kinase	2.7.1.35		
+	2535364	2535738	375	FIG00638119: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2535364_2535738		hypothetical protein		CDS	conserved hypothetical protein			
+	2535771	2536505	735	Molybdate metabolism regulator	peg	gi|49175990|ref|NC_000913.2|_2535771_2536505		Uncharacterized protein conserved in bacteria		CDS	WGR domain protein			
-	2536694	2537605	912	Cysteine synthase B (EC 2.5.1.47)	peg	gi|49175990|ref|NC_000913.2|_2537605_2536694		cysteine synthase B	2.5.1.47	CDS	cysteine synthase B	2.5.1.47	cysM	
+	2536515	2536697	183	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2536515_2536697								
-	2537739	2538836	1098	Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25)	peg	gi|49175990|ref|NC_000913.2|_2538836_2537739		sulfate ABC transporter, ATP-binding protein	3.6.3.25	CDS	sulfate ABC transporter, ATP-binding family protein	3.6.3.25	cysA	
-	2538826	2539701	876	Sulfate transport system permease protein CysW	peg	gi|49175990|ref|NC_000913.2|_2539701_2538826		sulfate ABC transporter, permease protein CysW		CDS	sulfate ABC transporter, permease protein CysW		cysW	
-	2539701	2540534	834	Sulfate transport system permease protein CysT	peg	gi|49175990|ref|NC_000913.2|_2540534_2539701		sulfate ABC transporter, permease protein CysT		CDS	sulfate ABC transporter, permease protein CysT		cysT	
-	2540534	2541550	1017	Sulfate and thiosulfate binding protein CysP	peg	gi|49175990|ref|NC_000913.2|_2541550_2540534		sulfate/thiosulfate-binding protein		CDS	thiosulfate-binding protein		cysP	
-	2541854	2542645	792	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	peg	gi|49175990|ref|NC_000913.2|_2542645_2541854		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	oxidoreductase ucpA	1.-.-.-	ucpA	
-	2542774	2543631	858	"Sialic acid utilization regulator, RpiR family"	peg	gi|49175990|ref|NC_000913.2|_2543631_2542774		transcriptional regulator, RpiR family		CDS	helix-turn-helix domain, rpiR family protein			
+	2543795	2544691	897	N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	peg	gi|49175990|ref|NC_000913.2|_2543795_2544691		N-acetylmuramate 6-phosphate etherase (EC 3.3.2.-)		CDS	N-acetylmuramic acid 6-phosphate etherase		murQ	
+	2544695	2546119	1425	putative PTS enzyme II	peg	gi|49175990|ref|NC_000913.2|_2544695_2546119		PTS system N-acetylmuramate-specific IIB component, Glc family (TC 4.A.1.2.7)/PTS system N-acetylmuramate-specific IIC component, Glc family (TC 4.A.1.2.7)		CDS	PTS system N-acetylmuramic acid-specific EIIBC component	2.7.1.69	murP	
+	2546124	2547428	1305	Beta-lactamase class C and other penicillin binding proteins	peg	gi|49175990|ref|NC_000913.2|_2546124_2547428		Beta-lactamase class C and other penicillin binding proteins		CDS	beta-lactamase family protein			
-	2547668	2548567	900	"Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup"	peg	gi|49175990|ref|NC_000913.2|_2548567_2547668		Dyp-type peroxidase family		CDS	dyp-type peroxidase family protein			
-	2548663	2549238	576	Predicted outer membrane lipoprotein YfeY	peg	gi|49175990|ref|NC_000913.2|_2549238_2548663		Protein of unknown function (DUF1131).		CDS	conserved hypothetical protein			
-	2549299	2549748	450	Inner membrane protein YfeZ	peg	gi|49175990|ref|NC_000913.2|_2549748_2549299		Protein of unknown function (DUF2919).		CDS	inner membrane protein yfeZ		yfeZ	
-	2549735	2550160	426	Acetyltransferase YpeA	peg	gi|49175990|ref|NC_000913.2|_2550160_2549735		Acetyltransferases		CDS	acetyltransferase family protein			
+	2550374	2551243	870	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	peg	gi|49175990|ref|NC_000913.2|_2550374_2551243		N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase AmiA	3.5.1.28	amiA	
+	2551247	2552146	900	"Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)"	peg	gi|49175990|ref|NC_000913.2|_2551247_2552146		coproporphyrinogen oxidase (EC 1.3.3.3)	1.3.3.3	CDS	coproporphyrinogen-III oxidase, aerobic	1.3.3.3	hemF	
-	2552152	2553204	1053	Ethanolamine operon regulatory protein	peg	gi|49175990|ref|NC_000913.2|_2553204_2552152		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	2553250	2553750	501	Ethanolamine utilization polyhedral-body-like protein EutK	peg	gi|49175990|ref|NC_000913.2|_2553750_2553250		Carbon dioxide concentrating mechanism/carboxysome shell protein		CDS	ethanolamine utilization protein EutK		eutK	
-	2553763	2554422	660	Ethanolamine utilization polyhedral-body-like protein EutL	peg	gi|49175990|ref|NC_000913.2|_2554422_2553763		Ethanolamine utilization protein		CDS	ethanolamine utilization protein EutL		eutL	
-	2554432	2555319	888	Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	peg	gi|49175990|ref|NC_000913.2|_2555319_2554432		Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)	4.3.1.7	CDS	ethanolamine ammonia-lyase light chain	4.3.1.7	eutC	
-	2555340	2556701	1362	Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	peg	gi|49175990|ref|NC_000913.2|_2556701_2555340		Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7)	4.3.1.7	CDS	ethanolamine ammonia-lyase heavy chain	4.3.1.7	eutB	
+	2556793	2558088	1296	putative prophage integrase	peg	gi|49175990|ref|NC_000913.2|_2556793_2558088		Integrase		CDS	phage integrase family protein			
+	2558685	2558915	231	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2558685_2558915								
+	2558393	2558920	528				hypothetical protein		CDS	conserved hypothetical protein			
+	2559393	2559635	243	CPZ-55 prophage; predicted protein	peg	gi|49175990|ref|NC_000913.2|_2559393_2559635		hypothetical protein		CDS	conserved hypothetical protein			
+	2559647	2560015	369				hypothetical protein		CDS				
+	2560133	2560549	417	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2560133_2560549		AT hook motif.		CDS	AT hook motif family protein			
+	2560546	2561139	594	FIG00640748: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2560546_2561139		hypothetical protein		CDS	putative d-sedoheptulose 7-phosphate isomerase			
+	2561614	2561991	378	CPZ-55 prophage; predicted protein	peg	gi|49175990|ref|NC_000913.2|_2561614_2561991		hypothetical protein		CDS	putative ilvM			
+	2562002	2562394	393	CPZ-55 prophage; predicted protein	peg	gi|49175990|ref|NC_000913.2|_2562002_2562394		hypothetical protein		CDS	putative predicted enzyme IIC component of PTS			
+	2562545	2563354	810	FIG00639312: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2562545_2563354		hypothetical protein		CDS	putative cPZ-55 prophage; predicted protein			
-	2563503	2564906	1404	Ethanolamine utilization protein EutA	peg	gi|49175990|ref|NC_000913.2|_2564906_2563503		Reactivating factor of Adenosylcobalamin-dependent ethanolamine ammonia lyase		CDS	ethanolamine utilization EutA family protein			
-	2564903	2566129	1227	Ethanolamine permease	peg	gi|49175990|ref|NC_000913.2|_2566129_2564903		Ethanolamine utilization protein		CDS	ethanolamine utilization , EutH family protein			
-	2566346	2567533	1188	Ethanolamine utilization protein EutG	peg	gi|49175990|ref|NC_000913.2|_2567533_2566346		acetaldehyde reductase EutG (EC 1.1.1.-)		CDS	ethanolamine utilization protein EutG	1.1.-.-	eutG	
-	2567523	2568359	837	Ethanolamine utilization protein EutJ	peg	gi|49175990|ref|NC_000913.2|_2568359_2567523		ethanolamine utilization protein EutJ family protein		CDS	ethanolamine utilization EutJ family protein			
-	2568370	2569773	1404	"Acetaldehyde dehydrogenase, ethanolamine utilization cluster"	peg	gi|49175990|ref|NC_000913.2|_2569773_2568370		acetaldehyde dehydrogenase (EC 1.2.1.10)		CDS	aldehyde dehydrogenase family protein			
-	2569785	2570072	288	Ethanolamine utilization polyhedral-body-like protein EutN	peg	gi|49175990|ref|NC_000913.2|_2570072_2569785		Carbon dioxide concentrating mechanism/carboxysome shell protein		CDS	ethanolamine utilization protein eutN		eutN	
-	2570179	2570472	294	Ethanolamine utilization polyhedral-body-like protein EutM	peg	gi|49175990|ref|NC_000913.2|_2570472_2570179		Carbon dioxide concentrating mechanism/carboxysome shell protein		CDS	ethanolamine utilization protein EutM		eutM	
-	2570511	2571527	1017	"Phosphate acetyltransferase (EC 2.3.1.8), ethanolamine utilization-specific"	peg	gi|49175990|ref|NC_000913.2|_2571527_2570511		phosphate acetyltransferase		CDS	phosphate acetyltransferase	2.3.1.8	pta	
-	2571524	2572327	804	"ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), ethanolamine utilization"	peg	gi|49175990|ref|NC_000913.2|_2572327_2571524		Ethanolamine utilization cobalamin adenosyltransferase	2.5.1.17	CDS	cobalamin adenosyltransferase family protein			
-	2572324	2573025	702	Ethanolamine utilization protein EutQ	peg	gi|49175990|ref|NC_000913.2|_2573025_2572324		Ethanolamine utilization protein		CDS	ethanolamine utilization protein eutQ		eutQ	
-	2573000	2573479	480	Ethanolamine utilization protein EutP	peg	gi|49175990|ref|NC_000913.2|_2573479_2573000		ethanolamine utilization protein, EutP		CDS	ethanolamine utilization protein, EutP		eutP	
-	2573492	2573827	336	Ethanolamine utilization polyhedral-body-like protein EutS	peg	gi|49175990|ref|NC_000913.2|_2573827_2573492		Ethanolamine utilization protein		CDS	ethanolamine utilization protein EutS		eutS	
-	2574120	2576399	2280	NADP-dependent malic enzyme (EC 1.1.1.40)	peg	gi|49175990|ref|NC_000913.2|_2576399_2574120		allosteric NADP-dependent malic enzyme (EC 1.1.1.40)	1.1.1.40	CDS	NADP-dependent malic enzyme	1.1.1.40	maeB	
+	2576688	2577638	951	Transaldolase (EC 2.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_2576688_2577638		transaldolase (EC 2.2.1.2)	2.2.1.2	CDS	transaldolase	2.2.1.2	tal	
+	2577658	2579661	2004	Transketolase (EC 2.2.1.1)	peg	gi|49175990|ref|NC_000913.2|_2577658_2579661		transketolase, bacterial and yeast	2.2.1.1	CDS	transketolase	2.2.1.1	tkt	
-	2579756	2580799	1044	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_2580799_2579756		Protein of unknown function (DUF1176).		CDS	conserved hypothetical protein			
-	2580925	2581500	576	GDP-mannose pyrophosphatase YffH	peg	gi|49175990|ref|NC_000913.2|_2581500_2580925		nudix-type nucleoside diphosphatase, YffH/AdpP family	3.6.1.-	CDS	GDP-mannose pyrophosphatase nudK	3.6.1.-	nudK	
-	2581568	2583547	1980	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	peg	gi|49175990|ref|NC_000913.2|_2583547_2581568		glutamate synthase small subunit family protein, proteobacterial		CDS	glutamate synthase, small subunit domain protein			
+	2583753	2585453	1701	Nitrate/nitrite sensor protein (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_2583753_2585453		Signal transduction histidine kinase, nitrate/nitrite-specific	2.7.13.3	CDS	HAMP domain protein			
+	2585617	2588730	3114	"RND efflux system, inner membrane transporter CmeB"	peg	gi|49175990|ref|NC_000913.2|_2585617_2588730		The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	RND transporter, hydrophobe/amphiphile efflux-1 family protein			
+	2589269	2589625	357	FIG138056: a glutathione-dependent thiol reductase	peg	gi|49175990|ref|NC_000913.2|_2589269_2589625		transcriptional regulator, Spx/MgsR family		CDS	protein YffB		yffB	
+	2589629	2590756	1128	"N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)"	peg	gi|49175990|ref|NC_000913.2|_2589629_2590756		succinyldiaminopimelate desuccinylase (EC 3.5.1.18)	3.5.1.18	CDS	succinyl-diaminopimelate desuccinylase	3.5.1.18	dapE	
+	2590784	2590984	201	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_2590784_2590984		Uncharacterised protein family (UPF0370).		CDS	conserved hypothetical protein			
-	2591094	2591792	699	Phospholipase/carboxylesterase family protein (EC 3.1.-.-)	peg	gi|49175990|ref|NC_000913.2|_2591792_2591094		Predicted esterase		CDS	dienelactone hydrolase family protein			
-	2591866	2593881	2016	Predicted P-loop ATPase fused to an acetyltransferase COG1444	peg	gi|49175990|ref|NC_000913.2|_2593881_2591866		tRNA(Met)-cytidine N(4)-acetyltransferase	2.3.1.193	CDS	tRNA(Met) cytidine acetyltransferase TmcA	2.3.1.193	tmcA	
-	2593896	2594759	864	"YpfJ protein, zinc metalloprotease superfamily"	peg	gi|49175990|ref|NC_000913.2|_2594690_2593896		Predicted metalloprotease		CDS	neutral zinc metallopeptidase family protein			
-	2594927	2595640	714	Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	peg	gi|49175990|ref|NC_000913.2|_2595640_2594927		phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	6.3.2.6	CDS	phosphoribosylaminoimidazolesuccinocarboxamide synthase	6.3.2.6	purC	
-	2595853	2596887	1035	"Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor"	peg	gi|49175990|ref|NC_000913.2|_2596887_2595853		Beta-barrel assembly machine subunit BamC		CDS	lipoprotein 34		nlpB	
+	2595712	2595942	231				hypothetical protein		CDS				
-	2596904	2597782	879	Dihydrodipicolinate synthase (EC 4.2.1.52)	peg	gi|49175990|ref|NC_000913.2|_2597782_2596904		dihydrodipicolinate synthase (EC 4.2.1.52)	4.2.1.52	CDS	dihydrodipicolinate synthase	4.2.1.52	dapA	
+	2597928	2598500	573	Glycine cleavage system transcriptional antiactivator GcvR	peg	gi|49175990|ref|NC_000913.2|_2597928_2598500		Glycine cleavage system regulatory protein		CDS	glycine cleavage system transcriptional repressor		gcvR	
+	2598500	2598970	471	"Thiol peroxidase, Bcp-type (EC 1.11.1.15)"	peg	gi|49175990|ref|NC_000913.2|_2598500_2598970		Peroxiredoxin	1.11.1.15	CDS	putative peroxiredoxin bcp			
+	2599223	2599840	618	Hydrogenase-4 component A (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2599223_2599840		Fe-S-cluster-containing hydrogenase components 2	1.-	CDS	hydrogenase-4 component A	1.-.-.-	hyfA	
+	2599840	2601858	2019	Hydrogenase-4 component B (EC 1.-.-.-) / Formate hydrogenlyase subunit 3	peg	gi|49175990|ref|NC_000913.2|_2599840_2601858		Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-	CDS	hydrogenase-4 component B	1.-.-.-	hyfB	
+	2601869	2602816	948	Hydrogenase-4 component C (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2601869_2602816		Formate hydrogenlyase subunit 4	1.-	CDS	hydrogenase-4 component C	1.-.-.-	hyfC	
+	2602833	2604272	1440	Hydrogenase-4 component D (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2602833_2604272		NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	1.-	CDS	NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			
+	2604284	2604934	651	Hydrogenase-4 component E (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2604284_2604934		Hydrogenase 4 membrane component (E)	1.-	CDS	hydrogenase-4 component E	1.-.-.-	hyfE	
+	2604939	2606519	1581	Hydrogenase-4 component F (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2604939_2606519		Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-	CDS	NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			
+	2606509	2608176	1668	Hydrogenase-4 component G (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2606509_2608176		Ni,Fe-hydrogenase III large subunit	1.-	CDS	hydrogenase-4 component G	1.-.-.-	hyfG	
+	2608186	2608731	546	Hydrogenase-4 component H (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2608186_2608731		Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)		CDS	4Fe-4S binding domain protein			
+	2608728	2609486	759	Hydrogenase-4 component I (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2608728_2609486		Ni,Fe-hydrogenase III small subunit	1.-	CDS	formate hydrogenlyase subunit 7		hycG	
+	2609479	2609892	414	Hydrogenase-4 component J (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_2609479_2609892		Formate hydrogenlyase maturation protein HycH.	1.-	CDS	formate hydrogenlyase maturation HycH family protein			
+	2609922	2611934	2013	Formate hydrogenlyase transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_2609922_2611934		Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains		CDS	AAA domain family protein			
+	2611956	2612804	849	Formate efflux transporter (TC 2.A.44 family)	peg	gi|49175990|ref|NC_000913.2|_2611956_2612804		formate/nitrite transporter		CDS	putative formate transporter 1			
-	2612842	2613903	1062	Putative permease PerM (= YfgO)	peg	gi|49175990|ref|NC_000913.2|_2613903_2612842		Predicted permease		CDS	conserved hypothetical protein			
+	2614116	2615579	1464	Exported zinc metalloprotease YfgC precursor	peg	gi|49175990|ref|NC_000913.2|_2614116_2615579		Putative Zn-dependent protease, contains TPR repeats		CDS	peptidase M48 family protein			
+	2615600	2615959	360	Arsenate reductase (EC 1.20.4.1)	peg	gi|49175990|ref|NC_000913.2|_2615600_2615959		arsenate reductase (glutaredoxin)	1.20.4.1	CDS	arsenate reductase	1.20.4.1	arsC	
-	2616097	2616843	747	DnaA regulatory inactivator Hda (Homologous to DnaA)	peg	gi|49175990|ref|NC_000913.2|_2616843_2616097		regulatory inactivation of DnaA Hda protein		CDS	dnaA regulatory inactivator Hda		hda	
-	2616893	2618182	1290	Uracil permease	peg	gi|49175990|ref|NC_000913.2|_2618182_2616893		uracil-xanthine permease		CDS	uracil permease		uraA	
-	2618268	2618894	627	Uracil phosphoribosyltransferase (EC 2.4.2.9)	peg	gi|49175990|ref|NC_000913.2|_2618894_2618268		uracil phosphoribosyltransferase (EC 2.4.2.9)	2.4.2.9	CDS	uracil phosphoribosyltransferase	2.4.2.9	upp	
+	2619219	2620256	1038	Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	peg	gi|49175990|ref|NC_000913.2|_2619219_2620256		phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	6.3.3.1	CDS	phosphoribosylformylglycinamidine cyclo-ligase	6.3.3.1	purM	
+	2620256	2620894	639	Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	peg	gi|49175990|ref|NC_000913.2|_2620256_2620894		formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)	2.1.2.2	CDS	phosphoribosylglycinamide formyltransferase	2.1.2.2	purN	
+	2621066	2623132	2067	Polyphosphate kinase (EC 2.7.4.1)	peg	gi|49175990|ref|NC_000913.2|_2621066_2623132		polyphosphate kinase 1	2.7.4.1	CDS	polyphosphate kinase 1	2.7.4.1	ppk1	
+	2623137	2624678	1542	Exopolyphosphatase (EC 3.6.1.11)	peg	gi|49175990|ref|NC_000913.2|_2623137_2624678		exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	exopolyphosphatase	3.6.1.11	ppx	
-	2624717	2626960	2244	Putative cytochrome C-type biogenesis protein	peg	gi|49175990|ref|NC_000913.2|_2626960_2624717		diguanylate cyclase/phosphodiesterase		CDS	cyclic di-GMP phosphodiesterase YfgF	3.1.4.52	yfgF	
-	2627142	2627294	153	FIG00639493: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2627294_2627142		hypothetical protein		CDS	conserved hypothetical protein			
+	2627312	2627503	192	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_2627312_2627503		Protein of unknown function (DUF2633).		CDS	conserved hypothetical protein			
+	2627817	2628332	516	Putative outer membrane lipoprotein	peg	gi|49175990|ref|NC_000913.2|_2627817_2628332		Outer membrane lipoprotein		CDS	glycine zipper family protein			
+	2628348	2628887	540	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_2628348_2628887		hypothetical protein		CDS	conserved hypothetical protein			
-	2628980	2630557	1578	"GMP synthase [glutamine-hydrolyzing], amidotransferase subunit (EC 6.3.5.2) / GMP synthase [glutamine-hydrolyzing], ATP pyrophosphatase subunit (EC 6.3.5.2)"	peg	gi|49175990|ref|NC_000913.2|_2630557_2628980		GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2)	6.3.5.2	CDS	GMP synthase [glutamine-hydrolyzing]	6.3.5.2	guaA	
-	2630626	2632092	1467	Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	peg	gi|49175990|ref|NC_000913.2|_2632092_2630626		inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	1.1.1.205	CDS	inosine-5'-monophosphate dehydrogenase	1.1.1.205	guaB	
-	2633621	2633836	216	Hypothetical protein yfgJ	peg	gi|49175990|ref|NC_000913.2|_2633836_2633621		Protein of unknown function (DUF1407).		CDS	conserved hypothetical protein			
+	2632254	2633624	1371	Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	peg	gi|49175990|ref|NC_000913.2|_2632254_2633624		Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	3.1.11.6	CDS	exodeoxyribonuclease VII, large subunit	3.1.11.6	xseA	
-	2633906	2635378	1473	GTP-binding protein EngA	peg	gi|49175990|ref|NC_000913.2|_2635378_2633906		ribosome-associated GTPase EngA		CDS	ribosome-associated GTPase EngA		engA	
-	2635496	2636674	1179	"Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)"	peg	gi|49175990|ref|NC_000913.2|_2636674_2635496		Beta-barrel assembly machine subunit BamB		CDS	outer membrane assembly lipoprotein YfgL		yfgL	
-	2636685	2637305	621	Mlr7403 protein	peg	gi|49175990|ref|NC_000913.2|_2637305_2636685		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2637323	2638597	1275	Histidyl-tRNA synthetase (EC 6.1.1.21)	peg	gi|49175990|ref|NC_000913.2|_2638597_2637323		histidyl-tRNA synthetase (EC 6.1.1.21)	6.1.1.21	CDS	histidine--tRNA ligase	6.1.1.21	hisS	
-	2638708	2639826	1119	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1)	peg	gi|49175990|ref|NC_000913.2|_2639826_2638708		4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3)	1.17.7.1	CDS	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1.17.7.1	ispG	
-	2639853	2640866	1014	FIG021952: putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_2640866_2639853		Uncharacterized protein conserved in bacteria		CDS	cytoskeleton protein rodZ		rodZ	
-	2641151	2642305	1155	Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_2642305_2641151		23S rRNA m(2)A-2503 methyltransferase (EC 2.1.1.192)	2.1.1.192	CDS	23S rRNA m2A2503 methyltransferase	2.1.1.-	rlmN	
-	2642455	2642886	432	Nucleoside diphosphate kinase (EC 2.7.4.6)	peg	gi|49175990|ref|NC_000913.2|_2642886_2642455		nucleoside diphosphate kinase (EC 2.7.4.6)	2.7.4.6	CDS	nucleoside diphosphate kinase	2.7.4.6	ndk	
-	2643035	2645347	2313	Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C	peg	gi|49175990|ref|NC_000913.2|_2645347_2643035		penicillin-binding protein 1C	2.4.1.-	CDS	penicillin-binding protein 1C		pbpC	
-	2645348	2650309	4962	Alpha-2-macroglobulin	peg	gi|49175990|ref|NC_000913.2|_2650309_2645348		Large extracellular alpha-helical protein		CDS	alpha-2-macroglobulin MG1 domain protein			
+	2650516	2651361	846	"Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1)"	peg	gi|49175990|ref|NC_000913.2|_2650516_2651361		Rhodanese-related sulfurtransferase	2.8.1.1, 2.8.1.2	CDS	3-mercaptopyruvate sulfurtransferase	2.8.1.2	sseA	
+	2651537	2651745	209										
-	2652179	2652955	777	Protein SseB	peg	gi|49175990|ref|NC_000913.2|_2652955_2652179		SseB protein.		CDS	sseB family protein			
+	2651877	2652180	304										
-	2653097	2654380	1284	Peptidase B (EC 3.4.11.23)	peg	gi|49175990|ref|NC_000913.2|_2654380_2653097		aminopeptidase B. Metallo peptidase. MEROPS family M17	3.4.11.23	CDS	peptidase B	3.4.11.23	pepB	
-	2654558	2654758	201	Believed to be involved in assembly of Fe-S clusters	peg	gi|49175990|ref|NC_000913.2|_2654758_2654558		FeS assembly protein IscX		CDS	feS assembly protein IscX		iscX	
-	2654770	2655105	336	"Ferredoxin, 2Fe-2S"	peg	gi|49175990|ref|NC_000913.2|_2655105_2654770		ferredoxin, 2Fe-2S type, ISC system		CDS	ferredoxin, 2Fe-2S type, ISC system		fdx	
-	2655107	2656957	1851	Chaperone protein HscA	peg	gi|49175990|ref|NC_000913.2|_2656957_2655107		Chaperone protein HscA		CDS	fe-S protein assembly chaperone HscA		hscA	
-	2656974	2657489	516	Chaperone protein HscB	peg	gi|49175990|ref|NC_000913.2|_2657489_2656974		Co-chaperone protein HscB		CDS	fe-S protein assembly co-chaperone HscB		hscB	
-	2657585	2657908	324	Iron binding protein IscA for iron-sulfur cluster assembly	peg	gi|49175990|ref|NC_000913.2|_2657908_2657585		Iron-binding apoprotein IscA		CDS	iron-sulfur cluster assembly protein IscA		iscA	
-	2657925	2658311	387	Iron-sulfur cluster assembly scaffold protein IscU	peg	gi|49175990|ref|NC_000913.2|_2658311_2657925		FeS assembly scaffold apoprotein IscU		CDS	nifU-like protein		nifU	
-	2658339	2659553	1215	"Cysteine desulfurase (EC 2.8.1.7), IscS subfamily"	peg	gi|49175990|ref|NC_000913.2|_2659553_2658339		cysteine desulfurase IscS	2.8.1.7	CDS	cysteine desulfurase IscS	2.8.1.7	iscS	
-	2659665	2660153	489	Iron-sulfur cluster regulator IscR	peg	gi|49175990|ref|NC_000913.2|_2660153_2659665		transcriptional regulator, BadM/Rrf2 family		CDS	iron-sulfur cluster assembly transcription factor IscR		iscR	
-	2660605	2661345	741	tRNA:Cm32/Um32 methyltransferase	peg	gi|49175990|ref|NC_000913.2|_2661345_2660605		RNA methyltransferase, TrmH family, group 1	2.1.1.200	CDS	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ	2.1.1.200	trmJ	
+	2661464	2662267	804	Inositol-1-monophosphatase (EC 3.1.3.25)	peg	gi|49175990|ref|NC_000913.2|_2661464_2662267		Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	3.1.3.25	CDS	inositol-1-monophosphatase	3.1.3.25	suhB	
+	2662412	2663266	855	Uncharacterized protein yfhR	peg	gi|49175990|ref|NC_000913.2|_2662412_2663266		Hydrolases of the alpha/beta superfamily		CDS	prolyl oligopeptidase family protein			
-	2664729	2665868	1140	Probable 3-phenylpropionic acid transporter	peg	gi|49175990|ref|NC_000913.2|_2665868_2664729		phenyl proprionate permease family protein		CDS	MFS transporter, phenyl propionate permease family protein			
+	2663457	2664737	1281	Stationary phase inducible protein CsiE	peg	gi|49175990|ref|NC_000913.2|_2663457_2664737		transcriptional antiterminator, BglG family		CDS	PRD domain protein			
-	2666028	2666921	894	Hca operon (3-phenylpropionic acid catabolism) transcriptional activator HcaR	peg	gi|49175990|ref|NC_000913.2|_2666921_2666028		Transcriptional regulator		CDS	hca operon transcriptional activator		hcaR	
+	2667054	2668415	1362	"3-phenylpropionate dioxygenase, alpha subunit (EC 1.14.12.19)"	peg	gi|49175990|ref|NC_000913.2|_2667054_2668415		phenylpropionate dioxygenase alpha subunit (EC 1.14.12.19)	1.14.12.19	CDS	biphenyl 2,3-dioxygenase alpha subunit	1.14.12.18	bphA1	
+	2668412	2668930	519	"3-phenylpropionate dioxygenase, beta subunit (EC 1.14.12.19)"	peg	gi|49175990|ref|NC_000913.2|_2668412_2668930		phenylpropionate dioxygenase beta subunit (EC 1.14.12.19)	1.14.12.19	CDS	ring hydroxylating beta subunit			
+	2668930	2669250	321	3-phenylpropionate dioxygenase ferredoxin subunit	peg	gi|49175990|ref|NC_000913.2|_2668930_2669250		phenylpropionate dioxygenase ferredoxin subunit (EC 1.14.12.19)		CDS	biphenyl dioxygenase ferredoxin subunit		bphA3	
+	2669247	2670059	813	"2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-)"	peg	gi|49175990|ref|NC_000913.2|_2669247_2670059		2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase (EC 1.3.1.-)	1.3.1.87	CDS	3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase	1.3.1.n1	hcaB	
+	2670069	2671271	1203	3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component (EC 1.18.1.3)	peg	gi|49175990|ref|NC_000913.2|_2670069_2671271		phenylpropionate dioxygenase ferredoxin reductase subunit (EC 1.18.1.3)	1.18.1.3	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	2671368	2671790	423	Inner membrane protein YphA	peg	gi|49175990|ref|NC_000913.2|_2671368_2671790		Predicted membrane protein		CDS	inner membrane protein yphA		yphA	
-	2671838	2672710	873	Aldose 1-epimerase family protein YphB	peg	gi|49175990|ref|NC_000913.2|_2672710_2671838		Galactose mutarotase and related enzymes		CDS	aldose 1-epimerase		yphB	
-	2672722	2673816	1095	Hypothetical zinc-type alcohol dehydrogenase-like protein YphC	peg	gi|49175990|ref|NC_000913.2|_2673816_2672722		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	zinc-binding dehydrogenase family protein			
-	2673849	2674847	999	"Predicted sugar ABC transport system, permease protein YphD"	peg	gi|49175990|ref|NC_000913.2|_2674847_2673849		monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)		CDS	branched-chain amino acid transport system / permease component family protein			
-	2674872	2676383	1512	"Predicted sugar ABC transport system, ATP-binding protein YphE"	peg	gi|49175990|ref|NC_000913.2|_2676383_2674872		monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)	3.6.3.17	CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
-	2676406	2677389	984	"Predicted sugar ABC transport system, periplasmic binding protein YphF precursor"	peg	gi|49175990|ref|NC_000913.2|_2677389_2676406		monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)		CDS	ABC transporter periplasmic-binding protein yphF		yphF	
-	2677486	2680767	3282	"Uncharacterized protein YphG, TPR-domain containing"	peg	gi|49175990|ref|NC_000913.2|_2680767_2677486		TPR repeat./Tetratricopeptide repeat.		CDS	tetratricopeptide repeat family protein			
+	2680885	2682078	1194	Putative NAGC-like transcriptional regulator	peg	gi|49175990|ref|NC_000913.2|_2680885_2682078		Transcriptional regulator/sugar kinase		CDS	ROK family protein			
-	2682276	2683529	1254	Serine hydroxymethyltransferase (EC 2.1.2.1)	peg	gi|49175990|ref|NC_000913.2|_2683529_2682276		serine hydroxymethyltransferase (EC 2.1.2.1)	2.1.2.1	CDS	serine hydroxymethyltransferase	2.1.2.1	glyA	
+	2683857	2685047	1191	Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)	peg	gi|49175990|ref|NC_000913.2|_2683857_2685047		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.14.12.17	CDS	oxidoreductase NAD-binding domain protein			
-	2685092	2685430	339	Nitrogen regulatory protein P-II	peg	gi|49175990|ref|NC_000913.2|_2685430_2685092		nitrogen regulatory protein P-II family		CDS	nitrogen regulatory protein P-II 1		glnB	
-	2685491	2686825	1335	Putative sensory histidine kinase YfhA	peg	gi|49175990|ref|NC_000913.2|_2686825_2685491		Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	AAA domain family protein			
-	2686815	2687528	714	putative alpha helix protein	peg	gi|49175990|ref|NC_000913.2|_2687528_2686815		YfhG lipoprotein.		CDS	yfhG lipofamily protein			
-	2687693	2689120	1428	Putative sensor-like histidine kinase YfhK	peg	gi|49175990|ref|NC_000913.2|_2689120_2687693		Signal transduction histidine kinase	2.7.13.3	CDS	putative sensor-like histidine kinase yfhK			
-	2689177	2689361	185										
-	2689678	2693565	3888	"Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)"	peg	gi|49175990|ref|NC_000913.2|_2693565_2689678		phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)	6.3.5.3	CDS	phosphoribosylformylglycinamidine synthase	6.3.5.3	purL	
-	2695376	2695879	504	tRNA-specific adenosine-34 deaminase (EC 3.5.4.-)	peg	gi|49175990|ref|NC_000913.2|_2695879_2695376		tRNA-adenosine deaminase (EC 3.5.4.-)	3.5.4.-	CDS	tRNA-specific adenosine deaminase	3.5.4.-	tadA	
+	2693823	2695379	1557	"Transglycosylase, Slt family"	peg	gi|49175990|ref|NC_000913.2|_2693823_2695379		Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein		CDS	lysozyme-like family protein			
-	2695937	2696572	636	"Hypothetical protein, similar to phosphoserine phosphatase"	peg	gi|49175990|ref|NC_000913.2|_2696572_2695937		haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB		CDS	haloacid dehalogenase-like hydrolase family protein			
+	2696781	2697629	849	"Sialic acid utilization regulator, RpiR family"	peg	gi|49175990|ref|NC_000913.2|_2696781_2697629		transcriptional regulator, RpiR family		CDS	helix-turn-helix domain, rpiR family protein			
+	2697685	2697945	261	"4Fe-4S ferredoxin, iron-sulfur binding"	peg	gi|49175990|ref|NC_000913.2|_2697760_2697945		Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)		CDS	conserved hypothetical protein			
-	2698640	2699020	381	Holo-[acyl-carrier protein] synthase (EC 2.7.8.7)	peg	gi|49175990|ref|NC_000913.2|_2699020_2698640		holo-[acyl-carrier-protein] synthase	2.7.8.7	CDS	holo-[acyl-carrier-protein] synthase	2.7.8.7	acpS	
-	2699020	2699751	732	Pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	peg	gi|49175990|ref|NC_000913.2|_2699751_2699020		pyridoxine 5'-phosphate synthase (EC 2.6.99.2)	2.6.99.2	CDS	pyridoxine 5'-phosphate synthase	2.6.99.2	pdxJ	
-	2699763	2700491	729	DNA recombination and repair protein RecO	peg	gi|49175990|ref|NC_000913.2|_2700491_2699763		DNA replication and repair protein RecO		CDS	DNA repair protein RecO		recO	
-	2700503	2701408	906	GTP-binding protein Era	peg	gi|49175990|ref|NC_000913.2|_2701408_2700503		GTP-binding protein Era		CDS	GTP-binding protein Era		era	
-	2701405	2702085	681	Ribonuclease III (EC 3.1.26.3)	peg	gi|49175990|ref|NC_000913.2|_2702085_2701405		RNAse III (EC 3.1.26.3)	3.1.26.3	CDS	ribonuclease III	3.1.26.3	rnc	
-	2702031	2702245	215										
-	2702357	2703331	975	Signal peptidase I (EC 3.4.21.89)	peg	gi|49175990|ref|NC_000913.2|_2703322_2702357		signal peptidase I (EC:3.4.21.89). Serine peptidase. MEROPS family S26A	3.4.21.89	CDS	signal peptidase I	3.4.21.89	lepB	
-	2703347	2705146	1800	Translation elongation factor LepA	peg	gi|49175990|ref|NC_000913.2|_2705146_2703347		GTP-binding protein LepA		CDS	GTP-binding protein LepA	3.6.5.-	lepA	
-	2705344	2705823	480	Sigma factor RpoE regulatory protein RseC	peg	gi|49175990|ref|NC_000913.2|_2705823_2705344		positive regulator of sigma(E), RseC/MucC		CDS	sigma-E factor regulatory protein rseC		rseC	
-	2705820	2706776	957	Sigma factor RpoE negative regulatory protein RseB precursor	peg	gi|49175990|ref|NC_000913.2|_2706776_2705820		sigma E regulatory protein, MucB/RseB		CDS	sigma-E factor regulatory protein rseB		rseB	
-	2706776	2707426	651	Sigma factor RpoE negative regulatory protein RseA	peg	gi|49175990|ref|NC_000913.2|_2707426_2706776		anti sigma-E protein, RseA		CDS	sigma-E factor negative regulatory protein		rseA	
-	2707459	2708034	576	RNA polymerase sigma factor RpoE	peg	gi|49175990|ref|NC_000913.2|_2708034_2707459		RNA polymerase, sigma-24 subunit, RpoE		CDS	RNA polymerase sigma factor RpoE		rpoE	
-	2710049	2710786	738	tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223)	peg	gi|49175990|ref|NC_000913.2|_2710786_2710049		Predicted O-methyltransferase		CDS	ribosomal L11 methyltransferase family protein			
+	2708442	2710064	1623	L-aspartate oxidase (EC 1.4.3.16)	peg	gi|49175990|ref|NC_000913.2|_2708472_2710064		L-aspartate oxidase (EC 1.4.3.16)	1.4.3.16	CDS	L-aspartate oxidase	1.4.3.16	nadB	
+	2710918	2712252	1335	ATP-dependent RNA helicase SrmB	peg	gi|49175990|ref|NC_000913.2|_2710918_2712252		Superfamily II DNA and RNA helicases	2.7.7.-	CDS	ATP-dependent RNA helicase SrmB	3.6.4.13	srmB	
-	2712461	2713342	882	LysR family transcriptional regulator YfiE	peg	gi|49175990|ref|NC_000913.2|_2713342_2712461		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	2713445	2714032	588	"Transporter, LysE family"	peg	gi|49175990|ref|NC_000913.2|_2713445_2714032		Putative threonine efflux protein		CDS	cysteine/O-acetylserine efflux protein		eamB	
-	2714088	2714471	384	Pyruvate formate-lyase (EC 2.3.1.54)	peg	gi|49175990|ref|NC_000913.2|_2714471_2714088		Acid-induced glycyl radical enzyme		CDS	autonomous glycyl radical cofactor		grcA	
+	2714776	2715465	690	"Uracil-DNA glycosylase, family 1"	peg	gi|49175990|ref|NC_000913.2|_2714776_2715465		Uracil-DNA glycosylase (EC 3.2.2.-)	3.2.2.27	CDS	uracil-DNA glycosylase	3.2.2.27	ung	
-	2715513	2716550	1038	hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]	peg	gi|49175990|ref|NC_000913.2|_2716550_2715513		rRNA methylases	2.1.1.-	CDS	RNA 2'-O ribose methyltransferase substrate binding family protein			
+	2716757	2717176	420	Thioredoxin 2 (EC 1.8.1.8)	peg	gi|49175990|ref|NC_000913.2|_2716757_2717176		thioredoxin	1.8.1.8	CDS	thioredoxin		trxA	
+	2717245	2717943	699	FIG00637884: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2717245_2717943		Uncharacterized conserved protein		CDS	DTW domain protein			
+	2717975	2720635	2661	Protein acetyltransferase	peg	gi|49175990|ref|NC_000913.2|_2717975_2720635		Acyl-CoA synthetase (NDP forming)		CDS	acetyltransferase family protein			
+	2720746	2722104	1359	CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8)	peg	gi|49175990|ref|NC_000913.2|_2720746_2722104		Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes	2.7.8.8	CDS	CDP-diacylglycerol--serine O-phosphatidyltransferase	2.7.8.8	pssA	
-	2722470	2723768	1299	Alpha-ketoglutarate permease	peg	gi|49175990|ref|NC_000913.2|_2723768_2722470		metabolite-proton symporter		CDS	alpha-ketoglutarate permease		kgtP	
+	2722201	2722473	273	Putative outer membrane lipoprotein	peg	gi|49175990|ref|NC_000913.2|_2722201_2722473		Predicted periplasmic lipoprotein		CDS	conserved hypothetical protein			
-	2724283	2727206	2924										
-	2724304	2727203	2900										
-	2727638	2729179	1542										
-	2727738	2729161	1424										
-	2729622	2732195	2574	ClpB protein	peg	gi|49175990|ref|NC_000913.2|_2732195_2729622		ATP-dependent chaperone ClpB		CDS	ATP-dependent chaperone protein ClpB		clpB	
-	2732325	2733056	732	COG1496: Uncharacterized conserved protein	peg	gi|49175990|ref|NC_000913.2|_2733056_2732325		uncharacterized protein, YfiH family		CDS	conserved hypothetical protein			
-	2733053	2734033	981	Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_2734033_2733053		ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-)	5.4.99.23	CDS	ribosomal large subunit pseudouridine synthase D	5.4.99.23	rluD	
+	2734168	2734905	738	"Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB)"	peg	gi|49175990|ref|NC_000913.2|_2734168_2734905		Beta-barrel assembly machine subunit BamD		CDS	conserved hypothetical protein			
+	2735176	2735517	342	Ribosome hibernation protein YfiA	peg	gi|49175990|ref|NC_000913.2|_2735176_2735517		SSU ribosomal protein S30P/sigma 54 modulation protein		CDS	ribosome-associated inhibitor A		raiA	
+	2735767	2736927	1161	Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51)	peg	gi|49175990|ref|NC_000913.2|_2735767_2736927		chorismate mutase domain of proteobacterial P-protein, clade 1	4.2.1.51, 5.4.99.5	CDS	P-protein	4.2.1.51	pheA	
-	2736970	2738091	1122	Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)	peg	gi|49175990|ref|NC_000913.2|_2738091_2736970		chorismate mutase domain of T-protein	1.3.1.12, 5.4.99.5	CDS	T-protein	1.3.1.12	tyrA	
-	2738102	2739172	1071	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54)	peg	gi|49175990|ref|NC_000913.2|_2739172_2738102		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		
+	2739382	2739747	366	FIG00638228: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2739382_2739747		Protein of unknown function (DUF2799).		CDS	conserved hypothetical protein			
+	2739897	2740415	519	Uncharacterized protein YfiR precursor	peg	gi|49175990|ref|NC_000913.2|_2739897_2740415		Domain of unknown function (DUF4154).		CDS	conserved hypothetical protein			
+	2740405	2741631	1227	Inner membrane protein YfiN	peg	gi|49175990|ref|NC_000913.2|_2740408_2741631		diguanylate cyclase (GGDEF) domain		CDS	putative diguanylate cyclase YfiN			
+	2741647	2742129	483	Integral membrane protein YfiB	peg	gi|49175990|ref|NC_000913.2|_2741746_2742129		Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	ompA family protein			
-	2742205	2742552	348	LSU ribosomal protein L19p	peg	gi|49175990|ref|NC_000913.2|_2742552_2742205		LSU ribosomal protein L19P		CDS	ribosomal protein L19		rplS	
-	2742594	2743361	768	tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31)	peg	gi|49175990|ref|NC_000913.2|_2743361_2742594		tRNA (Guanine37-N(1)-) methyltransferase (EC 2.1.1.31)		CDS	tRNA (guanine(37)-N(1))-methyltransferase		trmD	
-	2743392	2743943	552	16S rRNA processing protein RimM	peg	gi|49175990|ref|NC_000913.2|_2743943_2743392		16S rRNA processing protein RimM		CDS	16S rRNA processing protein RimM		rimM	
-	2743959	2744207	249	SSU ribosomal protein S16p	peg	gi|49175990|ref|NC_000913.2|_2744207_2743959		SSU ribosomal protein S16P		CDS	ribosomal protein S16		rpsP	
-	2744456	2745817	1362	"Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)"	peg	gi|49175990|ref|NC_000913.2|_2745817_2744456		signal recognition particle subunit FFH/SRP54 (srp54)		CDS	signal recognition particle protein		ffh	
+	2745909	2746775	867	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	peg	gi|49175990|ref|NC_000913.2|_2745909_2746775		ABC-type uncharacterized transport system, permease component		CDS	inner membrane protein ypjD		ypjD	
+	2746820	2748082	1263	Hemolysins and related proteins containing CBS domains	peg	gi|49175990|ref|NC_000913.2|_2746820_2748082		Putative Mg2+ and Co2+ transporter CorB		CDS	conserved hypothetical protein			
-	2748137	2748730	594	Heat shock protein GrpE	peg	gi|49175990|ref|NC_000913.2|_2748730_2748137		Molecular chaperone GrpE (heat shock protein)		CDS	protein grpE		grpE	
+	2748853	2749731	879	NAD kinase (EC 2.7.1.23)	peg	gi|49175990|ref|NC_000913.2|_2748925_2749731		Predicted sugar kinase	2.7.1.23	CDS	ATP-NAD kinase family protein			
+	2749817	2751478	1662	DNA repair protein RecN	peg	gi|49175990|ref|NC_000913.2|_2749817_2751478		DNA replication and repair protein RecN		CDS	DNA repair protein RecN		recN	
+	2751627	2751968	342	"Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex"	peg	gi|49175990|ref|NC_000913.2|_2751627_2751968		Beta-barrel assembly machine subunit BamE		CDS	small protein A		smpA	
-	2752030	2752320	291	UPF0125 protein yfjF	peg	gi|49175990|ref|NC_000913.2|_2752320_2752030		Uncharacterized protein conserved in bacteria		CDS	rnfH Ubiquitin family protein			
-	2752310	2752759	450	Putative oligoketide cyclase/dehydratase or lipid transport protein YfjG	peg	gi|49175990|ref|NC_000913.2|_2752699_2752310		Oligoketide cyclase/lipid transport protein		CDS	ribosome association toxin RatA		ratA	
+	2752918	2753400	483	tmRNA-binding protein SmpB	peg	gi|49175990|ref|NC_000913.2|_2752918_2753400		SsrA-binding protein		CDS	ssrA-binding protein		smpB	
+	2753615	2753977	363										
+	2754181	2755422	1242	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2754181_2755422		Integrase		CDS	prophage CP4-57 integrase		intA	
-	2755666	2756742	1077	putative histone	peg	gi|49175990|ref|NC_000913.2|_2756742_2755666		hypothetical protein		CDS	conserved hypothetical protein			
+	2756666	2756878	213				transcriptional regulator, AlpA family		CDS				
+	2757007	2758416	1410	Hyphotheical protein	peg	gi|49175990|ref|NC_000913.2|_2757007_2758416		Protein of unknown function (DUF3987).		CDS	conserved hypothetical protein			
+	2758569	2759195	627				Protein of unknown function (DUF3296).		CDS				
-	2759373	2761562	2190	ATP-dependent DNA helicase	peg	gi|49175990|ref|NC_000913.2|_2761562_2759373		Superfamily II helicase		CDS	DEAD/DEAH box helicase family protein			
-	2761559	2763175	1617	FIG00641488: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2763175_2761559		Domain of unknown function (DUF4297)./Domain of unknown function (DUF1837).		CDS	conserved hypothetical protein			
+	2763940	2765013	1074	putative cell division protein	peg	gi|49175990|ref|NC_000913.2|_2763940_2765013		hypothetical protein		CDS	conserved hypothetical protein			
+	2765006	2765377	372	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2765162_2765377		hypothetical protein		CDS	putative cP4-57 prophage; antitoxin of the RnlA-RnlB toxin-antitoxin system			
+	2765732	2766595	864	NgrB	peg	gi|49175990|ref|NC_000913.2|_2765732_2766595		Predicted GTPase		CDS	50S ribosome-binding GTPase family protein			
+	2766687	2767508	822	FIG01224161: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2766687_2767508		Domain of unknown function (DUF932).		CDS	conserved hypothetical protein			
+	2767725	2768426	702	FIG00641766: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2767725_2768426		Predicted transcriptional regulator		CDS	deoR-like helix-turn-helix domain protein			
+	2768467	2768703	237	predicted inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_2768467_2768703		hypothetical protein		CDS	putative membrane protein			
+	2768703	2769146	444	FIG00642476: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2768703_2769146		hypothetical protein		CDS	conserved hypothetical protein			
+	2769170	2769637	468	Intergenic-region protein	peg	gi|49175990|ref|NC_000913.2|_2769170_2769637		hypothetical protein		CDS	conserved hypothetical protein			
-	2769862	2770176	315	Arsenate reductase (EC 1.20.4.1)	peg	gi|49175990|ref|NC_000913.2|_2770176_2769862		Arsenate reductase and related proteins, glutaredoxin family	1.20.4.1	CDS	arsC family protein			
-	2770189	2770782	594	Arsenic efflux pump protein	peg	gi|49175990|ref|NC_000913.2|_2770782_2770189		Na+/H+ antiporter NhaD and related arsenite permeases		CDS	arsenical pump membrane family protein			
-	2770858	2771058	201	Arsenic efflux pump protein	peg	gi|49175990|ref|NC_000913.2|_2771058_2770858		Na+/H+ antiporter NhaD and related arsenite permeases		CDS	arsenical pump membrane family protein			
+	2771340	2773043	1704	FIG00638879: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2771340_2773043		hypothetical protein		CDS	putative membrane protein			
+	2773941	2774399	459	Antirestriction protein klcA	peg	gi|49175990|ref|NC_000913.2|_2773995_2774399		Antirestriction protein.		CDS	intergenic-region protein			
+	2774408	2774890	483	DNA repair protein RadC	peg	gi|49175990|ref|NC_000913.2|_2774408_2774890		DNA repair protein radc		CDS	conserved hypothetical protein			
+	2774899	2775099	201				Protein of unknown function (DUF987).		CDS				
+	2775137	2775454	318	YfjZ protein (antitoxin to YpjF)	peg	gi|49175990|ref|NC_000913.2|_2775137_2775454		YagB/YeeU/YfjZ family.		CDS	putative antitoxin YfjZ			
+	2775475	2775804	330	YpjF toxin protein	peg	gi|49175990|ref|NC_000913.2|_2775475_2775804		Protein of unknown function (DUF1219).		CDS	putative toxin YpjF			
-	2776168	2780748	4581	Pertactin precursor	peg	gi|49175990|ref|NC_000913.2|_2779803_2776168		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
-	2781660	2782451	792	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2782451_2781660		hypothetical protein		CDS	conserved hypothetical protein			
-	2782551	2783033	483	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2782859_2782551		hypothetical protein		CDS	conserved hypothetical protein			
+	2784419	2784751	333				hypothetical protein		CDS				
+	2784770	2785456	687	"Alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (GLYCOGENASE)"	peg	gi|49175990|ref|NC_000913.2|_2784770_2785456		Glycosidases		CDS	alpha amylase, catalytic domain protein			
+	2785469	2786260	792	"Alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (GLYCOGENASE) # fragment"	peg	gi|49175990|ref|NC_000913.2|_2785469_2786260		Alpha amylase, catalytic domain.		CDS	putative alpha amylase			
+	2786507	2786671	165	"Alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) (GLYCOGENASE)"	peg	gi|49175990|ref|NC_000913.2|_2786507_2786671					alpha amylase family domain protein			
+	2787007	2787984	978	Carbon starvation induced protein CsiD	peg	gi|49175990|ref|NC_000913.2|_2787007_2787984		CsiD.		CDS	protein CsiD		csiD	
+	2788004	2789272	1269	L-2-hydroxyglutarate oxidase (EC 1.1.3.15)	peg	gi|49175990|ref|NC_000913.2|_2788004_2789272		Predicted dehydrogenase	1.1.3.-	CDS	L-2-hydroxyglutarate oxidase LhgO	1.1.3.15	lhgO	
+	2789295	2790743	1449	Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)	peg	gi|49175990|ref|NC_000913.2|_2789295_2790743		succinate-semialdehyde dehydrogenase	1.2.1.16	CDS	succinate-semialdehyde dehydrogenase [NADP+] GabD	1.2.1.79	gabD	
+	2790757	2792037	1281	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)	peg	gi|49175990|ref|NC_000913.2|_2790757_2792037		4-aminobutyrate aminotransferase apoenzyme (EC 2.6.1.19)		CDS	4-aminobutyrate transaminase	2.6.1.19	gabT	
+	2792275	2793675	1401	gamma-aminobutyrate (GABA) permease	peg	gi|49175990|ref|NC_000913.2|_2792275_2793675		gamma-aminobutyrate:proton symporter, AAT family (TC 2.A.3.1.4)		CDS	GABA permease		gabP	
+	2793696	2794358	663	"CsiR, transcriptional repressor of CsiD"	peg	gi|49175990|ref|NC_000913.2|_2793696_2794358		transcriptional regulator, GntR family		CDS	HTH-type transcriptional repressor CsiR		csiR	
-	2794359	2794808	450	FIG00638941: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2794808_2794359		BON domain./LysM domain.		CDS	conserved hypothetical protein			
-	2794892	2795050	159	FIG00626295: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2795050_2794892		Uncharacterized homolog of Blt101		CDS	proteolipid membrane potential modulator family protein			
+	2795233	2795532	300	"Transcriptional regulator, ArsR family"	peg	gi|49175990|ref|NC_000913.2|_2795233_2795532		transcriptional regulator, ArsR family		CDS	putative HTH-type transcriptional regulator ygaV			
+	2795542	2796066	525	Rhodanese-related sulfurtransferases	peg	gi|49175990|ref|NC_000913.2|_2795542_2796066		Rhodanese-related sulfurtransferase		CDS	inner membrane protein ygaP		ygaP	
-	2796113	2796517	405	DNA-binding protein stpA	peg	gi|49175990|ref|NC_000913.2|_2796517_2796113		nucleoid protein StpA		CDS	DNA-binding protein stpA		stpA	
+	2797186	2797635	450	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_2797186_2797635		Protein of unknown function (DUF1144).		CDS	conserved hypothetical protein			
-	2797672	2798016	345	FIG01219827: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2798016_2797672		Protein of unknown function (DUF2002).		CDS	conserved hypothetical protein			
+	2798168	2798497	330	FIG00638140: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2798168_2798497		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	2798745	2798990	246	"Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib"	peg	gi|49175990|ref|NC_000913.2|_2798745_2798990		ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit (EC 1.17.4.1)		CDS	glutaredoxin-like protein nrdH		nrdH	
+	2798987	2799397	411	Ribonucleotide reduction protein NrdI	peg	gi|49175990|ref|NC_000913.2|_2798987_2799397		ribonucleoside-diphosphate reductase 2, operon protein nrdI		CDS	nrdI protein		nrdI	
+	2799370	2801514	2145	"Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)"	peg	gi|49175990|ref|NC_000913.2|_2799370_2801514		ribonucleoside-diphosphate reductase class Ib alpha subunit (EC 1.17.4.1)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		
+	2801524	2802483	960	"Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)"	peg	gi|49175990|ref|NC_000913.2|_2801524_2802483		ribonucleoside-diphosphate reductase class Ib beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	ribonucleoside-diphosphate reductase 2 subunit beta	1.17.4.1	nrdF	
+	2802837	2804039	1203	L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)	peg	gi|49175990|ref|NC_000913.2|_2802837_2804039		glycine betaine/L-proline transport ATP binding subunit	3.6.3.32	CDS	glycine betaine/L-proline transport ATP binding subunit		proV	
+	2804032	2805096	1065	L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)	peg	gi|49175990|ref|NC_000913.2|_2804032_2805096		ABC-type proline/glycine betaine transport system, permease component		CDS	binding--dependent transport system inner membrane component family protein			
+	2805154	2806146	993	L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)	peg	gi|49175990|ref|NC_000913.2|_2805154_2806146		ABC-type proline/glycine betaine transport systems, periplasmic components		CDS	glycine betaine-binding periplasmic protein		proX	
+	2806338	2806604	267	MFS permease protein	peg	gi|49175990|ref|NC_000913.2|_2806338_2806604		hypothetical protein		CDS	conserved hypothetical protein			
+	2806598	2807515	918	MFS permease protein	peg	gi|49175990|ref|NC_000913.2|_2806598_2807515		Arabinose efflux permease		CDS	major Facilitator Superfamily protein			
+	2807639	2808376	738	FIG00638108: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2807684_2808376		Predicted branched-chain amino acid permease (azaleucine resistance)		CDS	inner membrane protein YgaZ		ygaZ	
+	2808366	2808701	336	"Branched-chain amino acid transport, AzlD"	peg	gi|49175990|ref|NC_000913.2|_2808366_2808701		Branched-chain amino acid transport protein (AzlD).		CDS	branched-chain amino acid transport family protein			
+	2808792	2809322	531	Transcription repressor	peg	gi|49175990|ref|NC_000913.2|_2808792_2809322		Transcriptional regulators		CDS	marR family protein			
-	2809350	2809631	282	FIG00638175: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2809631_2809350					conserved hypothetical protein			
+	2809449	2810621	1173	Multidrug resistance protein A	peg	gi|49175990|ref|NC_000913.2|_2809641_2810621		efflux pump membrane protein (multidrug resistance protein A)		CDS	efflux pump membrane family protein			
+	2810638	2812176	1539	Multidrug resistance protein B	peg	gi|49175990|ref|NC_000913.2|_2810638_2812176		drug resistance transporter, EmrB/QacA subfamily		CDS	multidrug resistance protein B		emrB	
-	2812240	2812755	516	S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS	peg	gi|49175990|ref|NC_000913.2|_2812755_2812240		S-ribosylhomocysteine lyase (EC 4.4.1.21)/quorum-sensing autoinducer 2 (AI-2) synthesis protein LuxS	4.4.1.21	CDS	S-ribosylhomocysteine lyase	4.4.1.21	luxS	
-	2812905	2814461	1557	Glutamate--cysteine ligase (EC 6.3.2.2)	peg	gi|49175990|ref|NC_000913.2|_2814461_2812905		glutamate-cysteine ligase (EC 6.3.2.2)	6.3.2.2	CDS	glutamate--cysteine ligase	6.3.2.2	gshA	
-	2814534	2814962	429	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_2814962_2814534		Predicted membrane protein		CDS	inner membrane protein yqaA		yqaA	
-	2814959	2815525	567	Putative phosphatase YqaB	peg	gi|49175990|ref|NC_000913.2|_2815525_2814959		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase		CDS	phosphatase YqaB	3.1.3.-	yqaB	
-	2816983	2817168	186	Carbon storage regulator	peg	gi|49175990|ref|NC_000913.2|_2817168_2816983		carbon storage regulator, CsrA		CDS	carbon storage regulator		csrA	
-	2817403	2820033	2631	Alanyl-tRNA synthetase (EC 6.1.1.7)	peg	gi|49175990|ref|NC_000913.2|_2819922_2817403		alanyl-tRNA synthetase (EC 6.1.1.7)	6.1.1.7	CDS	alanine--tRNA ligase	6.1.1.7	alaS	
-	2820161	2820661	501	Regulatory protein RecX	peg	gi|49175990|ref|NC_000913.2|_2820661_2820161		Uncharacterized protein conserved in bacteria		CDS	regulatory protein recX		recX	
-	2820730	2821791	1062	RecA protein	peg	gi|49175990|ref|NC_000913.2|_2821791_2820730		protein RecA		CDS	protein RecA		recA	
-	2821871	2822368	498	C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS	peg	gi|49175990|ref|NC_000913.2|_2822368_2821871		competence/damage-inducible protein CinA C-terminal domain		CDS	protein YgaD		ygaD	
-	2822513	2823703	1191	Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_2823598_2822513		lytic murein transglycosylase B	3.2.1.-	CDS	lytic murein transglycosylase B	2.4.-.-	mltB	
+	2823854	2824417	564	"PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2823854_2824417		PTS system D-sorbitol-specific IIC component, Gut family (TC 4.A.4.1.1)		CDS	glucitol/sorbitol permease IIC component		srlA	
+	2824414	2825373	960	"PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2824414_2825373		PTS system D-sorbitol-specific IIB component, Gut family (TC 4.A.4.1.1)/PTS system D-sorbitol-specific IIC component, Gut family (TC 4.A.4.1.1)		CDS	glucitol/sorbitol-specific phosphotransferase enzyme IIB component	2.7.1.69	srlE	
+	2825384	2825755	372	"PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2825384_2825755		PTS system D-sorbitol-specific IIA component, Gut family (TC 4.A.4.1.1)	2.7.1.69	CDS	PTS system, glucitol/sorbitol-specific IIA component family protein	2.7.1.69		
+	2825759	2826538	780	Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)	peg	gi|49175990|ref|NC_000913.2|_2825759_2826538		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.140	CDS	sorbitol-6-phosphate 2-dehydrogenase	1.1.1.140	srlD	
+	2826643	2827002	360	Glucitol operon activator protein	peg	gi|49175990|ref|NC_000913.2|_2826643_2827002		Glucitol operon activator		CDS	glucitol operon activator family protein			
+	2827069	2827842	774	Glucitol operon repressor	peg	gi|49175990|ref|NC_000913.2|_2827069_2827842		transcriptional regulator, DeoR family		CDS	deoR C terminal sensor domain protein			
-	2828797	2830311	1515	Anaerobic nitric oxide reductase transcription regulator NorR	peg	gi|49175990|ref|NC_000913.2|_2830311_2828797		Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains		CDS	AAA domain family protein			
+	2827835	2828800	966	Glucitol operon GutQ protein	peg	gi|49175990|ref|NC_000913.2|_2827835_2828800		KpsF/GutQ family protein		CDS	arabinose 5-phosphate isomerase GutQ	5.3.1.13	gutQ	
+	2830498	2831937	1440	Anaerobic nitric oxide reductase flavorubredoxin	peg	gi|49175990|ref|NC_000913.2|_2830498_2831937		Uncharacterized flavoproteins		CDS	anaerobic nitric oxide reductase flavorubredoxin		norV	
+	2831934	2833067	1134	Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-)	peg	gi|49175990|ref|NC_000913.2|_2831934_2833067		NAD(P)H-nitrite reductase	1.18.1.-	CDS	nitric oxide reductase FlRd-NAD(+) reductase	1.18.1.-	norW	
-	2833195	2835447	2253	[NiFe] hydrogenase metallocenter assembly protein HypF	peg	gi|49175990|ref|NC_000913.2|_2835447_2833195		Hydrogenase maturation protein, carbamoyltransferase HypF		CDS	carbamoyltransferase HypF		hypF	
-	2835600	2836127	528	Fe-S-cluster-containing hydrogenase components 2	peg	gi|49175990|ref|NC_000913.2|_2836127_2835600		Fe-S-cluster-containing hydrogenase components 2		CDS	electron transport protein hydN		hydN	
-	2836105	2836272	168	FIG00638215: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2836272_2836105					putative predicted protein			
-	2836276	2837328	1053	AscBF operon repressor	peg	gi|49175990|ref|NC_000913.2|_2837328_2836276		transcriptional regulator, LacI family		CDS	periplasmic binding s and sugar binding domain of LacI family protein			
+	2837546	2839003	1458	"PTS system, arbutin-, cellobiose-, and salicin-specific IIBC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_2837546_2839003		PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.3)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.3)		CDS	PTS system, maltose and glucose-specific subfamily, IIC component domain protein			
+	2839012	2840436	1425	6-phospho-beta-glucosidase ascB (EC 3.2.1.86)	peg	gi|49175990|ref|NC_000913.2|_2839012_2840436		Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86	CDS	glycosyl hydrolase 1 family protein			
-	2840595	2841065	471	Coenzyme F420 hydrogenase maturation protease (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_2841065_2840595		Hydrogenase 3 maturation peptidase Hycl. Aspartic peptidase. MEROPS family A31	3.4.23.51	CDS	hydrogenase maturation peptidase HycI	3.4.23.-	hycI	
-	2841058	2841468	411	Formate hydrogenlyase maturation protein hycH	peg	gi|49175990|ref|NC_000913.2|_2841468_2841058		Formate hydrogenlyase maturation protein HycH.		CDS	formate hydrogenlyase maturation HycH family protein			
-	2841465	2842232	768	Formate hydrogenlyase subunit 7	peg	gi|49175990|ref|NC_000913.2|_2842232_2841465		[NiFe]-hydrogenase III apoprotein, small subunit		CDS	formate hydrogenlyase subunit 7		hycG	
-	2842232	2842774	543	"Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit"	peg	gi|49175990|ref|NC_000913.2|_2842774_2842232		Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)		CDS	4Fe-4S binding domain protein			
-	2842784	2844514	1731	Formate hydrogenlyase subunit 5	peg	gi|49175990|ref|NC_000913.2|_2844514_2842784		Ni,Fe-hydrogenase III large subunit		CDS	respiratory-chain NADH dehydrogenase, 30 Kd subunit			
-	2844511	2845434	924	Formate hydrogenlyase subunit 4	peg	gi|49175990|ref|NC_000913.2|_2845434_2844511		Formate hydrogenlyase subunit 4		CDS	hydrogenase-4 component C	1.-.-.-	hyfC	
-	2845437	2847263	1827	Formate hydrogenlyase subunit 3	peg	gi|49175990|ref|NC_000913.2|_2847263_2845437		Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit		CDS	NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			
-	2847260	2847871	612	Formate hydrogenlyase subunit 2	peg	gi|49175990|ref|NC_000913.2|_2847871_2847260		Fe-S-cluster-containing hydrogenase components 2		CDS	hydrogenase-4 component A	1.-.-.-	hyfA	
-	2847996	2848457	462	Formate hydrogenlyase regulatory protein HycA	peg	gi|49175990|ref|NC_000913.2|_2848457_2847996		Transcriptional repressor of hyc and hyp operons.		CDS	formate hydrogenlyase regulatory protein hycA		hycA	
+	2848657	2849019	363	[NiFe] hydrogenase nickel incorporation protein HypA	peg	gi|49175990|ref|NC_000913.2|_2848657_2849019		Hydrogenase-3 nickel incorporation protein HypA		CDS	hydrogenase nickel insertion protein HypA		hypA	
+	2849023	2849895	873	[NiFe] hydrogenase nickel incorporation-associated protein HypB	peg	gi|49175990|ref|NC_000913.2|_2849023_2849895		Hydrogenase nickel incorporation protein HypB		CDS	hydrogenase accessory protein HypB		hypB	
+	2849886	2850158	273	[NiFe] hydrogenase metallocenter assembly protein HypC	peg	gi|49175990|ref|NC_000913.2|_2849886_2850158		Hydrogenase maturation protein HypC		CDS	hydrogenase assembly chaperone HypC/HupF		hypC	
+	2850158	2851279	1122	[NiFe] hydrogenase metallocenter assembly protein HypD	peg	gi|49175990|ref|NC_000913.2|_2850158_2851279		Hydrogenase maturation protein HypD		CDS	hydrogenase expression/formation protein HypD		hypD	
+	2851276	2852286	1011	[NiFe] hydrogenase metallocenter assembly protein HypE	peg	gi|49175990|ref|NC_000913.2|_2851276_2852286		Hydrogenase maturation protein, carbamoyl dehydratase HypE		CDS	hydrogenase expression/formation protein HypE		hypE	
+	2852324	2854438	2115	Formate hydrogenlyase transcriptional activator	peg	gi|49175990|ref|NC_000913.2|_2852324_2854438		Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains		CDS	formate hydrogenlyase transcriptional activator		fhlA	
-	2854475	2854828	354	FIG00638716: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2854828_2854475		Nitrous oxide-stimulated promoter.		CDS	nitrous oxide-stimulated promoter family protein			
+	2855115	2857676	2562	DNA mismatch repair protein MutS	peg	gi|49175990|ref|NC_000913.2|_2855115_2857676		DNA mismatch repair protein MutS		CDS	DNA mismatch repair protein MutS		mutS	
+	2857782	2858438	657	Serine/threonine protein phosphatase 2 (EC 3.1.3.16)	peg	gi|49175990|ref|NC_000913.2|_2857782_2858438		Calcineurin-like phosphoesterase.	3.1.3.16	CDS	serine/threonine-protein phosphatase 2	3.1.3.16	pphB	
-	2858489	2859256	768	Hypothetical transcriptional regulator ygbI	peg	gi|49175990|ref|NC_000913.2|_2859256_2858489		transcriptional regulator, DeoR family		CDS	deoR C terminal sensor domain protein			
+	2859452	2860360	909	D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)	peg	gi|49175990|ref|NC_000913.2|_2859452_2860360		3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	1.1.-	CDS	NAD binding domain of 6-phosphogluconate dehydrogenase family protein			
+	2860357	2861523	1167	FIG00641944: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2860357_2861523		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	2861615	2862253	639	Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	peg	gi|49175990|ref|NC_000913.2|_2861615_2862253		Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases		CDS	class II Aldolase and Adducin N-terminal domain protein			
+	2862258	2863034	777	Hydroxypyruvate isomerase (EC 5.3.1.22)	peg	gi|49175990|ref|NC_000913.2|_2862258_2863034		Hydroxypyruvate isomerase		CDS	xylose isomerase-like TIM barrel family protein			
+	2863123	2864487	1365	Gluconate permease	peg	gi|49175990|ref|NC_000913.2|_2863123_2864487		gluconate transporter		CDS	inner membrane permease ygbN		ygbN	
-	2864581	2865573	993	RNA polymerase sigma factor RpoS	peg	gi|49175990|ref|NC_000913.2|_2865573_2864581		RNA polymerase, sigma 38 subunit, RpoS		CDS	RNA polymerase sigma factor RpoS		rpoS	
-	2865636	2866775	1140	Lipoprotein NlpD	peg	gi|49175990|ref|NC_000913.2|_2866625_2865636		Membrane proteins related to metalloendopeptidases		CDS	murein hydrolase activator NlpD		nlpD	
-	2866915	2867541	627	Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)	peg	gi|49175990|ref|NC_000913.2|_2867541_2866915		protein-L-isoaspartate(D-aspartate) O-methyltransferase	2.1.1.77	CDS	protein-L-isoaspartate O-methyltransferase	2.1.1.77	pcm	
-	2867535	2868296	762	5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11)	peg	gi|49175990|ref|NC_000913.2|_2868296_2867535		5'-nucleotidase (EC 3.1.3.5)/3'-nucleotidase (EC 3.1.3.6)/exopolyphosphatase (EC 3.6.1.11)	3.1.3.5	CDS	5'/3'-nucleotidase SurE	3.1.3.5	surE	
-	2868277	2869326	1050	tRNA pseudouridine 13 synthase (EC 4.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_2869326_2868277		tRNA pseudouridine synthase, TruD family	5.4.99.27	CDS	tRNA pseudouridine synthase D	5.4.99.27	truD	
-	2869323	2869802	480	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)"	peg	gi|49175990|ref|NC_000913.2|_2869802_2869323		2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	4.6.1.12	CDS	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	ispF	
-	2869802	2870512	711	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	peg	gi|49175990|ref|NC_000913.2|_2870512_2869802		2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	CDS	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	ispD	
-	2870531	2870842	312	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"	peg	gi|49175990|ref|NC_000913.2|_2870842_2870531		cell division protein FtsB		CDS	cell division protein ftsB		ftsB	
-	2871036	2871359	324	Putative cytochrome oxidase subunit	peg	gi|49175990|ref|NC_000913.2|_2871359_2871036		Protein of unknown function (DUF3561).		CDS	inner membrane protein ygbE		ygbE	
-	2871409	2872014	606	Adenylylsulfate kinase (EC 2.7.1.25)	peg	gi|49175990|ref|NC_000913.2|_2872014_2871409		adenylylsulfate kinase (EC 2.7.1.25)	2.7.1.25	CDS	adenylyl-sulfate kinase	2.7.1.25	cysC	
-	2872014	2873441	1428	Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)	peg	gi|49175990|ref|NC_000913.2|_2873441_2872014		sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)		CDS	sulfate adenylyltransferase subunit 1	2.7.7.4	cysN	
-	2873443	2874351	909	Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	peg	gi|49175990|ref|NC_000913.2|_2874351_2873443		sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	2.7.7.4	CDS	sulfate adenylyltransferase, small subunit	2.7.7.4	cysD	
+	2874603	2875640	1038	Alkaline phosphatase isozyme conversion protein precursor (EC 3.4.11.-)	peg	gi|49175990|ref|NC_000913.2|_2874603_2875640		IAP aminopeptidase. Metallo peptidase. MEROPS family M28C	3.4.11.-	CDS	M42 glutamyl aminopeptidase family protein			
+	2875893	2876120	228	FIG00639362: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2875893_2876120					conserved hypothetical protein			
-	2876591	2876875	285	"CRISPR-associated protein, Cas2"	peg	gi|49175990|ref|NC_000913.2|_2876752_2876591		CRISPR-associated protein, Cas2 family		CDS	CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI		cas2	
-	2876877	2877794	918	CRISPR-associated protein Cas1	peg	gi|49175990|ref|NC_000913.2|_2877794_2876877		CRISPR-associated protein, Cas1 family		CDS	CRISPR-associated endonuclease Cas1	3.1.-.-	cas1	
-	2877810	2878409	600	"CRISPR-associated protein, Cse3 family"	peg	gi|49175990|ref|NC_000913.2|_2878409_2877810		CRISPR-associated protein, Cse3 family		CDS	CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI		cas6e	
-	2878396	2879070	675				CRISPR-associated protein, Cas5e family		CDS				
-	2879073	2880164	1092	"CRISPR-associated protein, Cse4 family"	peg	gi|49175990|ref|NC_000913.2|_2880164_2879073		CRISPR-associated protein, Cse4 family		CDS	CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI		cas7	
-	2880177	2880659	483	"CRISPR-associated protein, Cse2 family"	peg	gi|49175990|ref|NC_000913.2|_2880659_2880177		CRISPR-associated protein, Cse2 family		CDS	CRISPR type I-E/ECOLI-associated protein CasB/Cse2		casB	
-	2880652	2882160	1509	"CRISPR-associated protein, Cse1 family"	peg	gi|49175990|ref|NC_000913.2|_2882160_2880652		CRISPR-associated protein, Cse1 family		CDS	CRISPR type I-E/ECOLI-associated protein CasA/Cse1		casA	
-	2882575	2885241	2667	"CRISPR-associated helicase Cas3, protein"	peg	gi|49175990|ref|NC_000913.2|_2885241_2882575		CRISPR-associated helicase, Cas3 family		CDS	CRISPR-associated endonuclease Cas3-HD	3.1.-.-		
-	2885322	2885477	156										
-	2885600	2886334	735	Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)	peg	gi|49175990|ref|NC_000913.2|_2886334_2885600		phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8)	1.8.4.8	CDS	phosphoadenosine phosphosulfate reductase	1.8.4.8	cysH	
-	2886409	2888121	1713	Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)	peg	gi|49175990|ref|NC_000913.2|_2888121_2886409		sulfite reductase (NADPH) beta subunit (EC 1.8.1.2)	1.8.1.2	CDS	sulfite reductase (NADPH) hemoprotein, beta-component	1.8.1.2	cysI	
-	2888121	2889920	1800	Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)	peg	gi|49175990|ref|NC_000913.2|_2889920_2888121		sulfite reductase (NADPH) alpha subunit (EC 1.8.1.2)	1.8.1.2	CDS	sulfite reductase [NADPH] flavoprotein, alpha-component	1.8.1.2		
+	2890236	2890601	366	"Queuosine biosynthesis QueD, PTPS-I"	peg	gi|49175990|ref|NC_000913.2|_2890239_2890601		preQ(0) biosynthesis protein QueD	4.2.3.12	CDS	queuosine biosynthesis protein QueD		queD	
+	2890679	2891950	1272	Probable electron transfer flavoprotein-quinone oxidoreductase YgcN (EC 1.5.5.-)	peg	gi|49175990|ref|NC_000913.2|_2890679_2891950		Dehydrogenases (flavoproteins)	1.5.5.-	CDS	FAD binding domain protein			
+	2891941	2892201	261	Ferredoxin-like protein YgcO	peg	gi|49175990|ref|NC_000913.2|_2891941_2892201		Ferredoxin-like protein		CDS	conserved hypothetical protein			
+	2892218	2892793	576	Glycerol uptake operon antiterminator regulatory protein	peg	gi|49175990|ref|NC_000913.2|_2892218_2892793		Glycerol-3-phosphate responsive antiterminator (mRNA-binding)		CDS	conserved hypothetical protein			
-	2892941	2893801	861	Putative electron transfer flavoprotein subunit YgcQ	peg	gi|49175990|ref|NC_000913.2|_2893801_2892941		electron transfer flavoprotein alpha subunit apoprotein		CDS	electron transfer flavodomain protein			
-	2893798	2894577	780	Putative electron transfer flavoprotein subunit YgcR	peg	gi|49175990|ref|NC_000913.2|_2894577_2893798		electron transfer flavoprotein beta subunit		CDS	electron transfer flavodomain protein			
-	2894555	2895964	1410	Inner membrane metabolite transport protein YgcS	peg	gi|49175990|ref|NC_000913.2|_2895892_2894555		Arabinose efflux permease		CDS	inner membrane metabolite transport protein ygcS		ygcS	
-	2895986	2897440	1455	Predicted FAD containing dehydrogenase	peg	gi|49175990|ref|NC_000913.2|_2897440_2895986		FAD/FMN-containing dehydrogenases		CDS	FAD linked oxidase, C-terminal domain protein			
-	2897510	2898295	786	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	peg	gi|49175990|ref|NC_000913.2|_2898295_2897510		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase family protein			
+	2898614	2899891	1278	Inner membrane protein YqcE	peg	gi|49175990|ref|NC_000913.2|_2898614_2899891		Nitrate/nitrite transporter		CDS	inner membrane protein yqcE		yqcE	
+	2899918	2901396	1479	Uncharacterized sugar kinase YgcE (EC 2.7.1.-)	peg	gi|49175990|ref|NC_000913.2|_2899918_2901396		Sugar (pentulose and hexulose) kinases		CDS	carbohydrate kinase, FGGY family			
+	2902269	2902451	183	FIG00639362: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2902269_2902451					conserved hypothetical protein			
-	2902769	2903440	672	Queuosine Biosynthesis QueE Radical SAM	peg	gi|49175990|ref|NC_000913.2|_2903440_2902769		Organic radical activating enzymes		CDS	conserved hypothetical protein			
+	2903733	2904605	873	Uncharacterized protein YgcG	peg	gi|49175990|ref|NC_000913.2|_2903733_2904605		Beta-propeller domains of methanol dehydrogenase type		CDS	repair family protein			
-	2904665	2905963	1299	Enolase (EC 4.2.1.11)	peg	gi|49175990|ref|NC_000913.2|_2905963_2904665		enolase (EC 4.2.1.11)	4.2.1.11	CDS	phosphopyruvate hydratase	4.2.1.11	eno	
-	2906051	2907688	1638	CTP synthase (EC 6.3.4.2)	peg	gi|49175990|ref|NC_000913.2|_2907688_2906051		CTP synthase (EC 6.3.4.2)	6.3.4.2	CDS	CTP synthase	6.3.4.2	pyrG	
-	2907916	2908707	792	Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8)	peg	gi|49175990|ref|NC_000913.2|_2908707_2907916		MazG family protein	3.6.1.8	CDS	nucleoside triphosphate pyrophosphohydrolase	3.6.1.8	mazG	
-	2908778	2909113	336	Programmed cell death toxin MazF	peg	gi|49175990|ref|NC_000913.2|_2909113_2908778		Growth inhibitor	3.1.-	CDS	mRNA interferase MazF	3.1.-.-	mazF	
-	2909113	2909361	249	Programmed cell death antitoxin MazE	peg	gi|49175990|ref|NC_000913.2|_2909361_2909113		Growth regulator		CDS	antitoxin MazE		mazE	
-	2909439	2911673	2235	COG0317: Guanosine polyphosphate pyrophosphohydrolases/synthetases( EC:2.7.6.5 )	peg	gi|49175990|ref|NC_000913.2|_2911673_2909439		(p)ppGpp synthetase, RelA/SpoT family	2.7.6.5	CDS	GTP pyrophosphokinase	2.7.6.5	relA	
-	2911721	2913022	1302	23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_2913022_2911721		23S rRNA m(5)U-1939 methyltransferase (EC 2.1.1.190)	2.1.1.190	CDS	23S rRNA (uracil-5-)-methyltransferase RumA	2.1.1.-	rumA	
+	2913079	2915835	2757	BarA sensory histidine kinase (= VarS = GacS)	peg	gi|49175990|ref|NC_000913.2|_2913079_2915835		Hpt sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	signal transduction histidine-protein kinase BarA	2.7.13.3	barA	
-	2916067	2917407	1341	Glucarate dehydratase (EC 4.2.1.40)	peg	gi|49175990|ref|NC_000913.2|_2917407_2916067		D-glucarate dehydratase (EC 4.2.1.40)	4.2.1.40	CDS	glucarate dehydratase	4.2.1.40	gudD	
-	2917428	2918768	1341	Glucarate dehydratase related protein YgcY	peg	gi|49175990|ref|NC_000913.2|_2918768_2917428		D-glucarate dehydratase (EC 4.2.1.40)		CDS	mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein			
-	2918770	2920122	1353	D-glucarate permease	peg	gi|49175990|ref|NC_000913.2|_2920122_2918770		D-galactonate transporter		CDS	putative glucarate transporter			
-	2920557	2921006	450	Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C)	peg	gi|49175990|ref|NC_000913.2|_2921006_2920557		Flavodoxins		CDS	flavodoxin family protein			
-	2921024	2921806	783	tRNA pseudouridine synthase C (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_2921806_2921024		tRNA pseudouridine synthase C (EC 5.4.99.-)	5.4.99.26	CDS	RNA pseudouridylate synthase family protein			
-	2921806	2922135	330	Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C)	peg	gi|49175990|ref|NC_000913.2|_2922135_2921806		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	2922178	2922537	360										
-	2922757	2923302	546	Syd protein	peg	gi|49175990|ref|NC_000913.2|_2923302_2922757		Syd protein (SUKH-2).		CDS	protein syd		syd	
+	2923370	2924218	849	NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)	peg	gi|49175990|ref|NC_000913.2|_2923370_2924218		7-cyano-7-deazaguanine reductase	1.7.1.13	CDS	queuine synthase	1.7.1.13	queF	
+	2924330	2925694	1365	Decarboxylase family protein	peg	gi|49175990|ref|NC_000913.2|_2924330_2925694		Predicted Rossmann fold nucleotide-binding protein		CDS	putative lysine decarboxylase family protein			
+	2926251	2927540	1290	Serine transporter	peg	gi|49175990|ref|NC_000913.2|_2926251_2927540		serine transporter		CDS	serine transporter		sdaC	
+	2927598	2928965	1368	L-serine dehydratase (EC 4.3.1.17)	peg	gi|49175990|ref|NC_000913.2|_2927598_2928965		L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17	CDS	L-serine ammonia-lyase	4.3.1.17		
+	2929077	2929832	756	DNA polymerase I (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_2929077_2929832		5'-3' exonuclease (including N-terminal domain of PolI)		CDS	protein Xni		ygdG	
-	2929887	2931038	1152	Lactaldehyde reductase (EC 1.1.1.77)	peg	gi|49175990|ref|NC_000913.2|_2931038_2929887		lactaldehyde reductase	1.1.1.77	CDS	lactaldehyde reductase	1.1.1.77	fucO	
-	2931063	2931710	648	L-fuculose phosphate aldolase (EC 4.1.2.17)	peg	gi|49175990|ref|NC_000913.2|_2931710_2931063		L-fuculose 1-phosphate aldolase (EC 4.1.2.17)	4.1.2.17	CDS	L-fuculose phosphate aldolase	4.1.2.17	fucA	
+	2932257	2933573	1317	Fucose permease	peg	gi|49175990|ref|NC_000913.2|_2932257_2933573		L-fucose:H+ symporter permease		CDS	H+ symporter permease		fucP	
+	2933606	2935381	1776	L-fucose isomerase (EC 5.3.1.25)	peg	gi|49175990|ref|NC_000913.2|_2933606_2935381		L-fucose isomerase (EC 5.3.1.25)	5.3.1.25	CDS	L-fucose isomerase	5.3.1.25	fucI	
+	2935490	2936908	1419	L-fuculokinase (EC 2.7.1.51)	peg	gi|49175990|ref|NC_000913.2|_2935490_2936908		L-fuculokinase (EC 2.7.1.51)	2.7.1.51	CDS	L-fuculokinase	2.7.1.51	fucK	
+	2936910	2937332	423	L-fucose mutarotase	peg	gi|49175990|ref|NC_000913.2|_2936910_2937332		Fucose dissimilation pathway protein FucU	5.1.3.-	CDS	L-fucose mutarotase	5.1.3.n2	fucU	
+	2937390	2938121	732	L-fucose operon activator	peg	gi|49175990|ref|NC_000913.2|_2937390_2938121		transcriptional regulator, DeoR family		CDS	deoR C terminal sensor domain protein			
-	2938165	2939265	1101	LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM	peg	gi|49175990|ref|NC_000913.2|_2939265_2938165		Predicted SAM-dependent methyltransferase	2.1.1.186	CDS	ribosomal RNA large subunit methyltransferase M	2.1.1.-	rlmM	
-	2939258	2939653	396	COG2363	peg	gi|49175990|ref|NC_000913.2|_2939653_2939258		Uncharacterized small membrane protein		CDS	conserved hypothetical protein			
-	2939672	2940589	918	Glycine cleavage system transcriptional activator GcvA	peg	gi|49175990|ref|NC_000913.2|_2940589_2939672		Transcriptional regulator		CDS	glycine cleavage system transcriptional activator		gcvA	
+	2940718	2940923	206										
-	2940940	2941167	228	probable lipoprotein	peg	gi|49175990|ref|NC_000913.2|_2941167_2940940		Bacterial protein of unknown function (DUF903).		CDS	conserved hypothetical protein			
+	2941359	2942564	1206	"Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA"	peg	gi|49175990|ref|NC_000913.2|_2941359_2942564		cysteine desulfurase, catalytic subunit CsdA	4.4.1.-	CDS	cysteine desulfurase, catalytic subunit CsdA	2.8.1.7	csdA	
+	2942564	2943007	444	"Cysteine desulfurase CsdA-CsdE, sulfur acceptor protein CsdE"	peg	gi|49175990|ref|NC_000913.2|_2942564_2943007		cysteine desulfurase, sulfur acceptor subunit CsdE		CDS	cysteine desulfurase, sulfur acceptor subunit CsdE	2.8.1.7	csdE	
-	2943058	2943864	807	HesA/MoeB/ThiF family protein related to EC-YgdL	peg	gi|49175990|ref|NC_000913.2|_2943858_2943058		Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1		CDS	thiF family protein			
-	2944103	2945200	1098	Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_2945170_2944103		Membrane-bound lytic murein transglycosylase	3.2.1.-	CDS	membrane-bound lytic murein transglycosylase A	4.2.2.n1	mltA	
-	2945779	2947032	1254	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	peg	gi|49175990|ref|NC_000913.2|_2947032_2945779		N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase AmiC	3.5.1.28	amiC	
+	2947264	2948595	1332	N-acetylglutamate synthase (EC 2.3.1.1)	peg	gi|49175990|ref|NC_000913.2|_2947264_2948595		N-acetylglutamate synthase (EC 2.3.1.1)	2.3.1.1	CDS	amino-acid N-acetyltransferase	2.3.1.1	argA	
-	2948657	2950483	1827	Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)	peg	gi|49175990|ref|NC_000913.2|_2950483_2948657		DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5)	3.1.11.5	CDS	exodeoxyribonuclease V, alpha subunit	3.1.11.5	recD	
-	2950483	2954025	3543	Exodeoxyribonuclease V beta chain (EC 3.1.11.5)	peg	gi|49175990|ref|NC_000913.2|_2954025_2950483		DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5)	3.1.11.5	CDS	exodeoxyribonuclease V, beta subunit	3.1.11.5	recB	
-	2954018	2956906	2889	Protease III precursor (EC 3.4.24.55)	peg	gi|49175990|ref|NC_000913.2|_2956906_2954018		pitrilysin (EC:3.4.24.55). Metallo peptidase. MEROPS family M16A	3.4.24.55	CDS	protease 3	3.4.24.55	ptrA	
-	2957082	2960450	3369	Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)	peg	gi|49175990|ref|NC_000913.2|_2960450_2957082		DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5)	3.1.11.5	CDS	exodeoxyribonuclease V, gamma subunit	3.1.11.5	recC	
-	2960463	2960810	348	FIG004136: Prepilin peptidase dependent protein C precursor	peg	gi|49175990|ref|NC_000913.2|_2960810_2960463		prepilin-type N-terminal cleavage/methylation domain		CDS	prepilin-type N-terminal cleavage/methylation domain protein			
-	2960771	2961178	408	FIG006270: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2961178_2960771		Protein of unknown function (DUF2509).		CDS	conserved hypothetical protein			
-	2961175	2961738	564	FIG004819: Prepilin peptidase dependent protein B precursor	peg	gi|49175990|ref|NC_000913.2|_2961738_2961175		prepilin-type N-terminal cleavage/methylation domain		CDS	prepilin-type N-terminal cleavage/methylation domain protein			
-	2961729	2962199	471	Prepilin peptidase dependent protein A precursor	peg	gi|49175990|ref|NC_000913.2|_2962199_2961729		prepilin-type N-terminal cleavage/methylation domain		CDS	prepilin-type N-terminal cleavage/methylation domain protein			
+	2962209	2962382	174	FIG102772: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2962209_2962382					conserved hypothetical protein			
-	2962383	2963177	795	Thymidylate synthase (EC 2.1.1.45)	peg	gi|49175990|ref|NC_000913.2|_2963177_2962383		thymidylate synthase (EC 2.1.1.45)	2.1.1.45	CDS	thymidylate synthase	2.1.1.45	thyA	
-	2963184	2964059	876	Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)	peg	gi|49175990|ref|NC_000913.2|_2964059_2963184		Prolipoprotein diacylglyceryl transferase	2.-	CDS	prolipoprotein diacylglyceryl transferase	2.4.99.-	lgt	
-	2964210	2966456	2247	"FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated"	peg	gi|49175990|ref|NC_000913.2|_2966456_2964210		phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	CDS	phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	ptsP	
-	2966469	2966999	531	Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_2966999_2966469		NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-	CDS	RNA pyrophosphohydrolase	3.6.1.-	rppH	
+	2967444	2967605	162	FIG00644768: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2967444_2967605					conserved hypothetical protein			
+	2967684	2968373	690	DNA mismatch repair endonuclease MutH	peg	gi|49175990|ref|NC_000913.2|_2967684_2968373		DNA mismatch repair protein MutH		CDS	DNA mismatch repair endonuclease MutH		mutH	
+	2968442	2969155	714	FIG003462: membrane protein	peg	gi|49175990|ref|NC_000913.2|_2968442_2969155		Membrane protein TerC, possibly involved in tellurium resistance		CDS	conserved hypothetical protein			
+	2969293	2969511	219	Hypothetical lipoprotein ygdR precursor	peg	gi|49175990|ref|NC_000913.2|_2969293_2969511		Bacterial protein of unknown function (DUF903).		CDS	conserved hypothetical protein			
+	2969619	2970659	1041	"Oxidoreductase, aldo/keto reductase family"	peg	gi|49175990|ref|NC_000913.2|_2969619_2970659		Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	protein tas		tas	
-	2970691	2971884	1194	Lysophospholipid transporter LplT	peg	gi|49175990|ref|NC_000913.2|_2971839_2970691		Major Facilitator Superfamily.		CDS	lysophospholipid transporter lplT		lplT	
-	2971877	2974036	2160	2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) / Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20)	peg	gi|49175990|ref|NC_000913.2|_2974036_2971877		Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	2.3.1.40, 6.2.1.20	CDS	bifunctional protein aas	6.2.1.20	aas	
+	2974621	2975652	1032	"Galactose operon repressor, GalR-LacI family of transcriptional regulators"	peg	gi|49175990|ref|NC_000913.2|_2974621_2975652		transcriptional regulator, LacI family		CDS	bacterial regulatory s, lacI family protein			
-	2975659	2976921	1263	Diaminopimelate decarboxylase (EC 4.1.1.20)	peg	gi|49175990|ref|NC_000913.2|_2976921_2975659		diaminopimelate decarboxylase	4.1.1.20	CDS	diaminopimelate decarboxylase	4.1.1.20	lysA	
-	2977965	2978657	693	Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family	peg	gi|49175990|ref|NC_000913.2|_2978657_2977965		aspartate racemase		CDS	conserved hypothetical protein			
+	2977043	2977978	936	Transcriptional activator protein LysR	peg	gi|49175990|ref|NC_000913.2|_2977043_2977978		Transcriptional regulator		CDS	transcriptional activator protein lysR		lysR	
-	2978786	2980204	1419	Arabinose-proton symporter	peg	gi|49175990|ref|NC_000913.2|_2980204_2978786		MFS transporter, sugar porter (SP) family		CDS	galactose-proton symporter		galP	
-	2980519	2981280	762	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	peg	gi|49175990|ref|NC_000913.2|_2981280_2980519		2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	1.1.1.125	CDS	2-deoxy-D-gluconate 3-dehydrogenase	1.1.1.125	kduD	
-	2981310	2982146	837	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	peg	gi|49175990|ref|NC_000913.2|_2982146_2981310		4-deoxy-L-threo-5-hexulose uronate isomerase	5.3.1.17	CDS	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase	5.3.1.17	kduI	
-	2982433	2983614	1182	Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg	gi|49175990|ref|NC_000913.2|_2983614_2982433		acetyl-CoA acetyltransferase (EC 2.3.1.9)	2.3.1.9	CDS	acetyl-CoA C-acetyltransferase family protein			
+	2983869	2985098	1230	Serine transporter	peg	gi|49175990|ref|NC_000913.2|_2983869_2985098		Amino acid permeases		CDS	inner membrane transport protein YqeG		yqeG	
+	2985558	2986190	633	Uncharacterized protein YqeH	peg	gi|49175990|ref|NC_000913.2|_2985621_2986190		DNA-binding HTH domain-containing proteins		CDS	bacterial regulatory s, luxR family protein			
+	2986524	2987333	810	Putative sensory transducer	peg	gi|49175990|ref|NC_000913.2|_2986524_2987333		DNA-binding winged-HTH domains		CDS	transcriptional regulatory , C terminal family protein			
+	2987326	2987808	483	YqeJ protein	peg	gi|49175990|ref|NC_000913.2|_2987326_2987808		hypothetical protein		CDS	putative predicted protein			
-	2987957	2988382	426				hypothetical protein		CDS				
+	2988576	2989022	447				hypothetical protein		CDS				
+	2989290	2989781	492	Type III secretion chaperone protein for YopD (SycD)	peg	gi|49175990|ref|NC_000913.2|_2989290_2989781		Tetratricopeptide repeat.		CDS	tetratricopeptide repeat family protein			
+	2990116	2991492	1377	Putative invasion protein	peg	gi|49175990|ref|NC_000913.2|_2990116_2991492		DNA-binding winged-HTH domains		CDS	conserved hypothetical protein			
+	2991660	2991878	219				hypothetical protein		CDS	conserved hypothetical protein			
-	2991945	2992115	171	FIG00640522: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2992115_2991945					conserved hypothetical protein			
+	2992063	2992437	375				Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)		CDS	transglycosylase SLT domain protein			
-	2992482	2992925	444				two component transcriptional regulator, LuxR family		CDS				
-	2992959	2993114	156	Hypothetical response regulatory protein ygeK	peg	gi|49175990|ref|NC_000913.2|_2993114_2992959		hypothetical protein		CDS	response regulator			
-	2993336	2993767	432	Putative uncharacterized protein ygeN	peg	gi|49175990|ref|NC_000913.2|_2993767_2993336		hypothetical protein		CDS	conserved hypothetical protein			
-	2993770	2994042	273	FIG00638587: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_2994042_2993770		hypothetical protein		CDS	conserved hypothetical protein			
-	2994394	2995299	906	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2995299_2994394		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	2995257	2995622	366	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_2995622_2995257		Transposase and inactivated derivatives		CDS	transposase family protein			
-	2996056	2996850	795	Uncharacterized protein YgeP	peg	gi|49175990|ref|NC_000913.2|_2996850_2996056		hypothetical protein		CDS	putative lipoprotein			
-	2997158	2997913	756	Uncharacterized lipoprotein YgeR precursor	peg	gi|49175990|ref|NC_000913.2|_2997913_2997158		Membrane proteins related to metalloendopeptidases		CDS	lysM domain protein			
+	2998328	3000625	2298	"Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)"	peg	gi|49175990|ref|NC_000913.2|_2998328_3000625		Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs	1.17.1.4	CDS	molybdopterin-binding domain of aldehyde dehydrogenase family protein			
+	3000636	3001514	879	"Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4)"	peg	gi|49175990|ref|NC_000913.2|_3000636_3001514		Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs	1.17.1.4	CDS	FAD binding domain in molybdopterin dehydrogenase family protein			
+	3001511	3001990	480	Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4)	peg	gi|49175990|ref|NC_000913.2|_3001511_3001990		Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs		CDS	2Fe-2S iron-sulfur cluster binding domain protein			
-	3002030	3003808	1779	Uncharacterized sigma-54-dependent transcriptional regulator YgeV	peg	gi|49175990|ref|NC_000913.2|_3003808_3002030		Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains		CDS	bacterial regulatory , Fis family protein			
+	3004284	3005474	1191	Aspartate/ornithine carbamoyltransferase family protein protein YgeW	peg	gi|49175990|ref|NC_000913.2|_3004284_3005474		probable carbamoyltransferase YgeW		CDS	conserved hypothetical protein			
+	3005532	3006728	1197	Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)	peg	gi|49175990|ref|NC_000913.2|_3005532_3006728		diaminopropionate ammonia-lyase (EC 4.3.1.15)	4.3.1.15	CDS	diaminopropionate ammonia-lyase	4.3.1.15	dpaL	
+	3006786	3007997	1212	Putative deacetylase YgeY	peg	gi|49175990|ref|NC_000913.2|_3006786_3007997		putative selenium metabolism hydrolase		CDS	peptidase M20/M25/M40 family protein			
+	3008050	3009435	1386	COG0044: Dihydroorotase and related cyclic amidohydrolases	peg	gi|49175990|ref|NC_000913.2|_3008050_3009435		dihydropyrimidinase (EC 3.5.2.2)	3.5.2.2	CDS	dihydropyrimidinase	3.5.2.2	hydA	
+	3009483	3010415	933	Carbamate kinase-like protein YqeA	peg	gi|49175990|ref|NC_000913.2|_3009483_3010415		carbamate kinase	2.7.2.2	CDS	carbamate kinase	2.7.2.2	arcC	
-	3010636	3012261	1626	"Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family / Selenium-dependent molybdenum hydroxylase system protein YqeB"	peg	gi|49175990|ref|NC_000913.2|_3012261_3010636		predicted molybdenum cofactor sulfurylase		CDS	conserved hypothetical protein			
-	3012309	3013079	771	Accessory protein YqeC in selenium-dependent molybdenum hydroxylase maturation	peg	gi|49175990|ref|NC_000913.2|_3013079_3012309		probable selenium-dependent hydroxylase accessory protein YqeC		CDS	putative selenium-dependent hydroxylase accessory protein YqeC			
+	3013182	3013760	579	CTP:molybdopterin cytidylyltransferase	peg	gi|49175990|ref|NC_000913.2|_3013182_3013760		molybdenum cofactor cytidylyltransferase (EC 2.7.7.76)		CDS	molybdenum hydroxylase accessory protein, YgfJ family		ygfJ	
+	3014082	3017180	3099	"Predicted oxidoreductase, Fe-S subunit"	peg	gi|49175990|ref|NC_000913.2|_3014082_3017180		selenate reductase, Fe-S subunit	1.97.1.9	CDS	putative selenate reductase, YgfK subunit			
+	3017183	3018511	1329	SsnA protein	peg	gi|49175990|ref|NC_000913.2|_3017183_3018511		putative selenium metabolism protein SsnA		CDS	protein SsnA		ssnA	
+	3018562	3019341	780	Uncharacterized protein YgfM	peg	gi|49175990|ref|NC_000913.2|_3018562_3019341		selenate reductase, FAD-binding subunit		CDS	FAD binding domain in molybdopterin dehydrogenase family protein			
+	3019338	3022208	2871	Possible hypoxanthine oxidase XdhD (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_3019338_3022208		selenate reductase, molybdenum-binding subunit apoprotein		CDS	molybdopterin-binding domain of aldehyde dehydrogenase family protein			
+	3022373	3023773	1401	Putative purine permease YgfO	peg	gi|49175990|ref|NC_000913.2|_3022373_3023773		uracil-xanthine permease		CDS	uracil-xanthine permease family protein			
+	3023791	3025107	1317	Guanine deaminase (EC 3.5.4.3)	peg	gi|49175990|ref|NC_000913.2|_3023791_3025107		guanine deaminase (EC 3.5.4.3)	3.5.4.3	CDS	guanine deaminase	3.5.4.3	guaD	
+	3025143	3026510	1368	Xanthine/uracil/thiamine/ascorbate permease family protein	peg	gi|49175990|ref|NC_000913.2|_3025143_3026510		Permeases		CDS	putative permease yjcD			
-	3026546	3027034	489	"Predicted oxidoreductase, Fe-S subunit"	peg	gi|49175990|ref|NC_000913.2|_3027034_3026546		Fe-S-cluster-containing hydrogenase components 2		CDS	4Fe-4S binding domain protein			
-	3027034	3028968	1935	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	peg	gi|49175990|ref|NC_000913.2|_3028968_3027034		glutamate synthase small subunit family protein, proteobacterial		CDS	glutamate synthase, small subunit domain protein			
+	3029389	3030837	1449	Putative permease	peg	gi|49175990|ref|NC_000913.2|_3029539_3030837		xanthine permease		CDS	putative purine permease ygfU			
+	3031087	3031635	549	Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	peg	gi|49175990|ref|NC_000913.2|_3031087_3031635		isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	5.3.3.2	CDS	isopentenyl-diphosphate delta-isomerase	5.3.3.2	idi	
-	3031679	3033196	1518	Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	peg	gi|49175990|ref|NC_000913.2|_3033196_3031679		lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	lysine--tRNA ligase	6.1.1.6	lysS	
-	3033206	3034087	882	Peptide chain release factor 2; programmed frameshift-containing	peg	gi|49175990|ref|NC_000913.2|_3034087_3033206		bacterial peptide chain release factor 2 (bRF-2)		CDS	peptide chain release factor 2		prfB	
+	3034088	3034243	156	FIG00638342: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3034088_3034243					conserved hypothetical protein			
-	3034395	3036128	1734	Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	peg	gi|49175990|ref|NC_000913.2|_3036128_3034395		single-stranded-DNA-specific exonuclease RecJ	3.1.-	CDS	single-stranded-DNA-specific exonuclease RecJ	3.1.-.-	recJ	
-	3036134	3036844	711	Thiol:disulfide interchange protein DsbC	peg	gi|49175990|ref|NC_000913.2|_3036844_3036134		Thiol:disulfide interchange protein DsbC	5.3.4.1	CDS	DSBA-like thioredoxin domain protein			
-	3036869	3037765	897	Tyrosine recombinase XerD	peg	gi|49175990|ref|NC_000913.2|_3037765_3036869		tyrosine recombinase XerD		CDS	tyrosine recombinase XerD		xerD	
+	3037877	3038398	522	Flavodoxin 2	peg	gi|49175990|ref|NC_000913.2|_3037877_3038398		flavodoxin, long chain		CDS	flavodoxin			
-	3038438	3038845	408	FIG00622612: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3038845_3038438		Protein of unknown function (DUF1434).		CDS	conserved hypothetical protein			
-	3038826	3039092	267	YgfY COG2938	peg	gi|49175990|ref|NC_000913.2|_3039092_3038826		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	3039335	3040315	981	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress	peg	gi|49175990|ref|NC_000913.2|_3039335_3040315		folate-binding protein YgfZ		CDS	tRNA-modifying protein ygfZ		ygfZ	
-	3040511	3041170	660	COG1272: Predicted membrane protein hemolysin III homolog	peg	gi|49175990|ref|NC_000913.2|_3041170_3040511		channel protein, hemolysin III family		CDS	conserved hypothetical protein			
-	3041334	3041645	312	Protein HI1394	peg	gi|49175990|ref|NC_000913.2|_3041645_3041334		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	3041684	3043123	1440	6-phospho-beta-glucosidase (EC 3.2.1.86)	peg	gi|49175990|ref|NC_000913.2|_3041684_3043123		Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86	CDS	glycosyl hydrolase 1 family protein			
-	3043180	3043923	744	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_3043908_3043180		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	conserved hypothetical protein			
-	3044190	3047063	2874	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	peg	gi|49175990|ref|NC_000913.2|_3047063_3044190		glycine dehydrogenase (decarboxylating) alpha subunit (EC 1.4.4.2)/glycine dehydrogenase (decarboxylating) beta subunit (EC 1.4.4.2)	1.4.4.2	CDS	glycine dehydrogenase	1.4.4.2	gcvP	
-	3047182	3047571	390	Glycine cleavage system H protein	peg	gi|49175990|ref|NC_000913.2|_3047571_3047182		glycine cleavage system H protein		CDS	glycine cleavage system H protein		gcvH	
-	3047595	3048689	1095	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	peg	gi|49175990|ref|NC_000913.2|_3048689_3047595		glycine cleavage system T protein	2.1.2.10	CDS	glycine cleavage system T protein	2.1.2.10	gcvT	
-	3049137	3050339	1203	"2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)"	peg	gi|49175990|ref|NC_000913.2|_3050339_3049137		2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)		CDS	ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family protein	1.14.13.-		
-	3050362	3051540	1179	2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)	peg	gi|49175990|ref|NC_000913.2|_3051540_3050362		2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)/2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)	1.14.13.-	CDS	2-polyprenyl-6-methoxyphenol 4-hydroxylase	1.14.13.-	ubiH	
-	3051537	3052862	1326	Xaa-Pro aminopeptidase (EC 3.4.11.9)	peg	gi|49175990|ref|NC_000913.2|_3052862_3051537		aminopeptidase P (EC:3.4.11.9). Metallo peptidase. MEROPS family M24B	3.4.11.9	CDS	xaa-Pro aminopeptidase	3.4.11.9	pepP	
-	3052888	3053466	579	UPF0149 exported protein YgfB	peg	gi|49175990|ref|NC_000913.2|_3053466_3052888		yecA family protein		CDS	conserved hypothetical protein			
+	3053634	3053963	330	Z-ring-associated protein ZapA	peg	gi|49175990|ref|NC_000913.2|_3053634_3053963		cell division protein ZapA		CDS	cell division ZapA family protein			
+	3054005	3054188	184										
+	3054209	3054811	603	5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)	peg	gi|49175990|ref|NC_000913.2|_3054209_3054811		5,10-methenyltetrahydrofolate synthetase	6.3.3.2	CDS	5-formyltetrahydrofolate cyclo-ligase	6.3.3.2		
+	3054837	3054987	151										
-	3055200	3056432	1233	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	peg	gi|49175990|ref|NC_000913.2|_3056432_3055200		D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	1.1.1.95	CDS	D-3-phosphoglycerate dehydrogenase	1.1.1.95	serA	
-	3056688	3057347	660	Ribose 5-phosphate isomerase A (EC 5.3.1.6)	peg	gi|49175990|ref|NC_000913.2|_3057347_3056688		ribose-5-phosphate isomerase (EC 5.3.1.6)	5.3.1.6	CDS	ribose 5-phosphate isomerase A	5.3.1.6	rpiA	
-	3057403	3057633	231	FIG00639909: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3057633_3057403		LysR substrate binding domain.		CDS	lysR substrate binding domain protein			
+	3057775	3058668	894	Chromosome initiation inhibitor	peg	gi|49175990|ref|NC_000913.2|_3057775_3058668		transcriptional regulator, ArgP family		CDS	chromosome initiation inhibitor		iciA	
+	3058872	3061016	2145	Methylmalonyl-CoA mutase (EC 5.4.99.2)	peg	gi|49175990|ref|NC_000913.2|_3058872_3061016		methylmalonyl-CoA mutase C-terminal domain/methylmalonyl-CoA mutase N-terminal domain	5.4.99.2	CDS	methylmalonyl-CoA mutase N-terminal domain protein	5.4.99.-		
+	3061009	3062004	996	putative periplasmic protein kinase ArgK and related GTPases of G3E family	peg	gi|49175990|ref|NC_000913.2|_3061009_3062004		LAO/AO transport system ATPase	2.7.-	CDS	LAO/AO transport system ATPase	2.7.-.-		
+	3062015	3062800	786	Methylmalonyl-CoA decarboxylase (EC 4.1.1.41)	peg	gi|49175990|ref|NC_000913.2|_3062015_3062800		methylmalonyl-CoA decarboxylase, homohexamer (EC 4.1.1.41)	4.1.1.41	CDS	enoyl-CoA hydratase/isomerase family protein			
-	3064299	3065195	897	COG0583: Transcriptional regulator	peg	gi|49175990|ref|NC_000913.2|_3065195_3064299		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	3062824	3064302	1479	Propionyl-CoA:succinyl-CoA transferase	peg	gi|49175990|ref|NC_000913.2|_3062824_3064302		succinate CoA transferases		CDS	acetyl-CoA hydrolase/transferase family protein			
-	3065362	3066102	741	Protein of unknown function DUF541	peg	gi|49175990|ref|NC_000913.2|_3066102_3065362		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	3066195	3066830	636	"Transporter, LysE family"	peg	gi|49175990|ref|NC_000913.2|_3066788_3066195		L-lysine exporter		CDS	arginine exporter protein ArgO		argO	
-	3066969	3067829	861	Protein involved in stability of MscS mechanosensitive channel	peg	gi|49175990|ref|NC_000913.2|_3067829_3066969		Small-conductance mechanosensitive channel		CDS	small-conductance mechanosensitive channel		mscS	
-	3068187	3069266	1080	Fructose-bisphosphate aldolase class II (EC 4.1.2.13)	peg	gi|49175990|ref|NC_000913.2|_3069266_3068187		fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13	CDS	fructose-bisphosphate aldolase, class II	4.1.2.13	fbaA	
-	3069481	3070644	1164	Phosphoglycerate kinase (EC 2.7.2.3)	peg	gi|49175990|ref|NC_000913.2|_3070644_3069481		phosphoglycerate kinase (EC 2.7.2.3)	2.7.2.3	CDS	phosphoglycerate kinase	2.7.2.3	pgk	
-	3070694	3071713	1020	D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72)	peg	gi|49175990|ref|NC_000913.2|_3071713_3070694		erythrose 4-phosphate dehydrogenase (EC 1.2.1.72)	1.2.1.72	CDS	erythrose-4-phosphate dehydrogenase	1.2.1.72	epd	
-	3071998	3072711	714	Uridine kinase family protein YggC homolog	peg	gi|49175990|ref|NC_000913.2|_3072711_3071998		Panthothenate kinase		CDS	conserved hypothetical protein			
-	3072708	3073217	510	Putative transcriptional regulator	peg	gi|49175990|ref|NC_000913.2|_3073217_3072708		Transcriptional regulator		CDS	putative transcriptional regulator			
-	3073239	3074204	966	"Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)"	peg	gi|49175990|ref|NC_000913.2|_3074204_3073239		fructose-1,6-bisphosphatase, class II		CDS	fructose-1,6-bisphosphatase, class II	3.1.3.11	glpX	
-	3074201	3075478	1278	Putative oxidoreductase linked to yggC	peg	gi|49175990|ref|NC_000913.2|_3075478_3074201		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	zinc-binding dehydrogenase family protein			
-	3075493	3076881	1389	"COG2213: Phosphotransferase system, mannitol-specific IIBC component"	peg	gi|49175990|ref|NC_000913.2|_3076881_3075493		PTS system D-mannitol-specific IIB component, Fru family (TC 4.A.2.1.5)/PTS system D-mannitol-specific IIC component, Fru family (TC 4.A.2.1.5)		CDS	PTS system mannitol-specific cryptic EIICB component	2.7.1.69	cmtA	
-	3076909	3077352	444	"PTS system, mannitol-specific enzyme II component, cryptic"	peg	gi|49175990|ref|NC_000913.2|_3077352_3076909		PTS system IIA component, Fru family (TC 4.A.2)		CDS	mannitol-specific cryptic phosphotransferase enzyme IIA component	2.7.1.-	cmtB	
-	3077666	3079657	1992	Transketolase (EC 2.2.1.1)	peg	gi|49175990|ref|NC_000913.2|_3079657_3077666		transketolase (EC 2.2.1.1)	2.2.1.1	CDS	transketolase	2.2.1.1	tkt	
+	3079935	3080693	759	Putative metalloprotease yggG (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_3079935_3080693		Zn-dependent protease with chaperone function	3.4.24.-	CDS	conserved hypothetical protein			
-	3080899	3081819	921	Agmatinase (EC 3.5.3.11)	peg	gi|49175990|ref|NC_000913.2|_3081819_3080899		agmatinase (EC 3.5.3.11)	3.5.3.11	CDS	agmatinase	3.5.3.11	speB	
-	3081957	3083933	1977	Biosynthetic arginine decarboxylase (EC 4.1.1.19)	peg	gi|49175990|ref|NC_000913.2|_3083855_3081957		arginine decarboxylase (EC 4.1.1.19)	4.1.1.19	CDS	arginine decarboxylase	4.1.1.19	speA	
-	3084421	3084672	252				Protein of unknown function (DUF2684).		CDS				
+	3084728	3085882	1155	S-adenosylmethionine synthetase (EC 2.5.1.6)	peg	gi|49175990|ref|NC_000913.2|_3084728_3085882		methionine adenosyltransferase (EC 2.5.1.6)	2.5.1.6	CDS	methionine adenosyltransferase	2.5.1.6	metK	
+	3086306	3087700	1395	Arabinose-proton symporter	peg	gi|49175990|ref|NC_000913.2|_3086306_3087700		MFS transporter, sugar porter (SP) family		CDS	galactose-proton symporter		galP	
+	3087777	3088274	498	Protein sprT	peg	gi|49175990|ref|NC_000913.2|_3087819_3088274		Uncharacterized protein conserved in bacteria		CDS	sprT-like family protein			
+	3088369	3089076	708	endonuclease I precursor( EC:3.1.21.1 )	peg	gi|49175990|ref|NC_000913.2|_3088369_3089076		Endonuclease I	3.1.21.1	CDS	endonuclease-1	3.1.21.1	endA	
+	3089156	3089887	732	Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_3089156_3089887		16S rRNA m(3)U-1498 methyltransferase (EC 2.1.1.193)	2.1.1.193	CDS	ribosomal RNA small subunit methyltransferase E	2.1.1.193	rsmE	
+	3089900	3090850	951	Glutathione synthetase (EC 6.3.2.3)	peg	gi|49175990|ref|NC_000913.2|_3089900_3090850		glutathione synthase (EC 6.3.2.3)	6.3.2.3	CDS	glutathione synthase	6.3.2.3	gshB	
+	3090887	3091522	636	UPF0301 protein YqgE	peg	gi|49175990|ref|NC_000913.2|_3090959_3091522		Putative transcriptional regulator		CDS	conserved hypothetical protein			
+	3091522	3091938	417	Putative Holliday junction resolvase YggF	peg	gi|49175990|ref|NC_000913.2|_3091522_3091938		RNAse H-fold protein YqgF	3.1.-	CDS	putative Holliday junction resolvase			
-	3092122	3093102	981	Twitching motility protein PilT	peg	gi|49175990|ref|NC_000913.2|_3093003_3092122		pilus retraction protein PilT		CDS	conserved hypothetical protein			
+	3093120	3093824	705	"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"	peg	gi|49175990|ref|NC_000913.2|_3093120_3093824		pyridoxal phosphate enzyme, YggS family		CDS	conserved hypothetical protein			
+	3093842	3094408	567	"Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)"	peg	gi|49175990|ref|NC_000913.2|_3093842_3094408		Predicted integral membrane protein		CDS	YGGT family protein			
+	3094405	3094695	291	UPF0235 protein VC0458	peg	gi|49175990|ref|NC_000913.2|_3094405_3094695		TIGR00251 family protein		CDS	conserved hypothetical protein			
+	3094703	3095296	594	"Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15)"	peg	gi|49175990|ref|NC_000913.2|_3094703_3095296		non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.19	CDS	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.-	rdgB	
+	3095289	3096425	1137	"Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB"	peg	gi|49175990|ref|NC_000913.2|_3095289_3096425		coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22)	1.3.99.22	CDS	radical SAM superfamily protein			
-	3096580	3097587	1008	Putative alpha helix chain	peg	gi|49175990|ref|NC_000913.2|_3097587_3096580		Protein of unknown function (DUF1202).		CDS	conserved hypothetical protein			
-	3097704	3098750	1047	L-asparaginase (EC 3.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_3098750_3097704		L-asparaginases, type II	3.5.1.1	CDS	L-asparaginase 2	3.5.1.1	ansB	
-	3098926	3099645	720	FIG004016: Uncharacterized protein YggN	peg	gi|49175990|ref|NC_000913.2|_3099645_3098926		Protein of unknown function (DUF2884).		CDS	conserved hypothetical protein			
-	3099829	3100155	327	FIG002060: uncharacterized protein YggL	peg	gi|49175990|ref|NC_000913.2|_3100155_3099829		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3100155	3100874	720	tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33)	peg	gi|49175990|ref|NC_000913.2|_3100874_3100155		tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)	2.1.1.33	CDS	tRNA (guanine-N(7)-)-methyltransferase	2.1.1.33	trmB	
+	3101035	3102087	1053	A/G-specific adenine glycosylase (EC 3.2.2.-)	peg	gi|49175990|ref|NC_000913.2|_3101035_3102087		A/G-specific DNA-adenine glycosylase (EC 3.2.2.-)	3.2.2.-	CDS	A/G-specific adenine glycosylase	3.2.2.-	mutY	
+	3102115	3102390	276	FIG001341: Probable Fe(2+)-trafficking protein YggX	peg	gi|49175990|ref|NC_000913.2|_3102115_3102390		Fe-S cluster protector protein		CDS	putative Fe(2+)-trafficking protein			
+	3102455	3103534	1080	Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_3102455_3103534		Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	conserved hypothetical protein			
+	3103736	3104992	1257	Nucleoside permease NupG	peg	gi|49175990|ref|NC_000913.2|_3103736_3104992		nucleoside transporter		CDS	nucleoside permease nupG		nupG	
-	3105042	3107177	2136	Ornithine decarboxylase (EC 4.1.1.17)	peg	gi|49175990|ref|NC_000913.2|_3107177_3105042		Arginine/lysine/ornithine decarboxylases	4.1.1.17	CDS	ornithine decarboxylase, constitutive	4.1.1.17	speC	
+	3107575	3108282	708	Putative inner membrane protein YqgA	peg	gi|49175990|ref|NC_000913.2|_3107575_3108282		Uncharacterized membrane protein, possible Na+ channel or pump		CDS	conserved hypothetical protein			
-	3108612	3109148	537	General secretion pathway protein M	peg	gi|49175990|ref|NC_000913.2|_3109148_3108612		Type II secretory pathway, component PulM		CDS	type II secretion system (T2SS), M family protein			
-	3109150	3110043	894	General secretion pathway protein L	peg	gi|49175990|ref|NC_000913.2|_3110043_3109150		type II secretion system protein L (GspL)		CDS	type II secretion system protein L		gspL	
-	3110076	3111071	996	General secretion pathway protein C	peg	gi|49175990|ref|NC_000913.2|_3111071_3110076		type II secretion system protein C (GspC)		CDS	type II secretion system protein C		gspC	
-	3111089	3111499	411	Hypothetical lipoprotein yghG precursor	peg	gi|49175990|ref|NC_000913.2|_3111499_3111089		hypothetical protein		CDS	putative lipoprotein			
-	3111565	3112497	933	Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_3112497_3111565		Type II secretory pathway, prepilin signal peptidase PulO and related peptidases	2.1.1.-, 3.4.23.43	CDS	leader peptidase pppA		pppA	
-	3112572	3117134	4563	Accessory colonization factor AcfD precursor	peg	gi|49175990|ref|NC_000913.2|_3117134_3112572		Peptidase M60-like family./Domain of unknown function (DUF4092).		CDS	conserved hypothetical protein			
+	3117285	3117467	183	FIG00641808: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3117285_3117467					conserved hypothetical protein			
-	3117619	3119301	1683	Glycolate permease	peg	gi|49175990|ref|NC_000913.2|_3119283_3117619		L-lactate transport		CDS	glycolate permease glcA		glcA	
+	3119380	3119601	222										
-	3119656	3121827	2172	Malate synthase G (EC 2.3.3.9)	peg	gi|49175990|ref|NC_000913.2|_3121827_3119656		malate synthase (EC 2.3.3.9)	2.3.3.9	CDS	malate synthase G	2.3.3.9	glcB	
-	3121849	3122253	405	Hypothetical protein GlcG in glycolate utilization operon	peg	gi|49175990|ref|NC_000913.2|_3122253_3121849		Uncharacterized protein, possibly involved in utilization of glycolate and propanediol		CDS	conserved hypothetical protein			
-	3122258	3123481	1224	"Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF"	peg	gi|49175990|ref|NC_000913.2|_3123481_3122258		Fe-S oxidoreductase		CDS	4Fe-4S binding domain protein			
-	3123492	3124544	1053	"Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE"	peg	gi|49175990|ref|NC_000913.2|_3124544_3123492		FAD/FMN-containing dehydrogenases		CDS	FAD binding domain protein			
-	3124544	3126043	1500	"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD"	peg	gi|49175990|ref|NC_000913.2|_3126034_3124544		glycolate oxidase, subunit GlcD	1.1.3.15	CDS	glycolate oxidase, subunit GlcD		glcD	
+	3126294	3127058	765	Glycolate utilization operon transcriptional activator GlcC	peg	gi|49175990|ref|NC_000913.2|_3126294_3127058		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
-	3127065	3128201	1137	FIG010505: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3128201_3127065		hypothetical protein		CDS	putative dNA-binding transcriptional regulator domain protein			
+	3128200	3129216	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3128200_3129216		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
-	3129363	3130430	1068	"Inner membrane protein YghQ, probably involved in polysaccharide biosynthesis"	peg	gi|49175990|ref|NC_000913.2|_3130430_3129363		Membrane protein involved in the export of O-antigen and teichoic acid		CDS	inner membrane protein yghQ		yghQ	
-	3130476	3131234	759	"Conserved protein YghR, with nucleoside triphosphate hydrolase domain"	peg	gi|49175990|ref|NC_000913.2|_3131234_3130476		Thymidylate kinase		CDS	thymidylate kinase family protein			
-	3131266	3131964	699	Conserved ATP-binding protein YghS	peg	gi|49175990|ref|NC_000913.2|_3131964_3131266		hypothetical protein		CDS	molybdopterin guanine dinucleotide synthesis B family protein			
+	3132153	3132845	693	"Conserved protein YghT, with nucleoside triphosphate hydrolase domain"	peg	gi|49175990|ref|NC_000913.2|_3132153_3132845		Thymidylate kinase		CDS	conserved hypothetical protein			
-	3132894	3134393	1500	Low-affinity inorganic phosphate transporter	peg	gi|49175990|ref|NC_000913.2|_3134393_3132894		Phosphate/sulphate permeases		CDS	low-affinity inorganic phosphate transporter 1		pitA	
-	3134685	3136544	1860	Glutathionylspermidine synthase (EC 6.3.1.8) / Glutathionylspermidine amidohydrolase (EC 3.5.1.78)	peg	gi|49175990|ref|NC_000913.2|_3136544_3134685		Glutathionylspermidine synthase	3.5.1.78, 6.3.1.8	CDS	bifunctional glutathionylspermidine synthetase/amidase	3.5.1.78	gsp	
+	3136749	3137615	867	Uncharacterized GST-like protein yghU associated with glutathionylspermidine synthetase/amidase	peg	gi|49175990|ref|NC_000913.2|_3136749_3137615		Glutathione S-transferase		CDS	glutathione S-transferase, C-terminal domain protein			
-	3137738	3137986	249	[NiFe] hydrogenase metallocenter assembly protein HybG	peg	gi|49175990|ref|NC_000913.2|_3137986_3137738		Hydrogenase 2 accessory protein HybG		CDS	hydrogenase assembly chaperone HypC/HupF		hypC	
-	3137999	3138340	342	[NiFe] hydrogenase nickel incorporation protein HybF	peg	gi|49175990|ref|NC_000913.2|_3138340_3137999		hydrogenase nickel insertion protein HypA		CDS	hydrogenase nickel insertion protein HypA		hypA	
-	3138333	3138821	489	Hydrogenase-2 operon protein hybE	peg	gi|49175990|ref|NC_000913.2|_3138821_3138333		Tat proofreading chaperone HybE		CDS	hydrogenase-2 operon protein hybE		hybE	
-	3138814	3139308	495	Hydrogenase maturation protease (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_3139308_3138814		Hydrogenase 2 maturation peptidase. Aspartic peptidase. MEROPS family A31	3.4.24.-	CDS	hydrogenase expression/formation protein	3.4.23.-	hybD	
-	3139308	3141011	1704	Uptake hydrogenase large subunit (EC 1.12.99.6)	peg	gi|49175990|ref|NC_000913.2|_3141011_3139308		[NiFe]-hydrogenase II apoprotein, large subunit	1.12.99.6	CDS	hydrogenase-2 large chain	1.12.99.6	hybC	
-	3141008	3142186	1179	Ni/Fe-hydrogenase 2 B-type cytochrome subunit	peg	gi|49175990|ref|NC_000913.2|_3142186_3141008		[NiFe]-hydrogenase II apocytochrome b subunit		CDS	polysulphide reductase, NrfD family protein			
-	3142176	3143162	987	Hydrogenase-2 operon protein hybA precursor	peg	gi|49175990|ref|NC_000913.2|_3143162_3142176		[NiFe]-hydrogenase II apoprotein, ferredoxin-type subunit		CDS	tat (twin-arginine translocation) pathway signal sequence domain protein			
-	3143165	3144283	1119	Uptake hydrogenase small subunit precursor (EC 1.12.99.6)	peg	gi|49175990|ref|NC_000913.2|_3144283_3143165		hydrogenase (NiFe) small subunit (hydA)	1.12.99.6	CDS	hydrogenase-2 small chain	1.12.99.6	hybO	
-	3144472	3144759	288	FIG00638753: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3144759_3144472		Protein of unknown function (DUF2623).		CDS	conserved hypothetical protein			
-	3144878	3145288	411	Dienelactone hydrolase family	peg	gi|49175990|ref|NC_000913.2|_3145288_3144878		Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	prolyl oligopeptidase family protein			
-	3145288	3145641	354	COG0412: Dienelactone hydrolase and related enzymes	peg	gi|49175990|ref|NC_000913.2|_3145641_3145288		Dienelactone hydrolase and related enzymes		CDS	dienelactone hydrolase family protein			
+	3145919	3146959	1041	Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)	peg	gi|49175990|ref|NC_000913.2|_3145919_3146959		Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	aldo/keto reductase family protein			
-	3146999	3147493	495	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_3147493_3146999		TIGR00645 family protein		CDS	conserved hypothetical protein			
+	3147684	3148568	885	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_3147684_3148568		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	conserved hypothetical protein			
-	3148840	3149265	426	Biopolymer transport protein ExbD/TolR	peg	gi|49175990|ref|NC_000913.2|_3149265_3148840		outer membrane transport energization protein ExbD (TC 2.C.1.1.1)		CDS	tonB system transport protein ExbD		exbD	
-	3149272	3150006	735	MotA/TolQ/ExbB proton channel family protein	peg	gi|49175990|ref|NC_000913.2|_3150006_3149272		outer membrane transport energization protein ExbB (TC 2.C.1.1.1)		CDS	tonB-system energizer ExbB		exbB	
+	3150258	3151445	1188	Cystathionine beta-lyase (EC 4.4.1.8)	peg	gi|49175990|ref|NC_000913.2|_3150258_3151445		cystathionine beta-lyase, bacterial	4.4.1.8	CDS	cystathionine beta-lyase	4.4.1.8	metC	
+	3151585	3152244	660	DedA family inner membrane protein YghB	peg	gi|49175990|ref|NC_000913.2|_3151585_3152244		Uncharacterized membrane-associated protein		CDS	inner membrane protein YghB		yghB	
-	3152284	3153240	957	"Transcriptional regulator YqhC, positively regulates YqhD and DkgA"	peg	gi|49175990|ref|NC_000913.2|_3153183_3152284		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
+	3153377	3154540	1164	NADPH-dependent broad range aldehyde dehydrogenase YqhD	peg	gi|49175990|ref|NC_000913.2|_3153377_3154540		Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family	1.1.-	CDS	alcohol dehydrogenase YqhD	1.1.1.-	yqhD	
+	3154645	3155472	828	"Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconate reductase A (EC 1.1.1.274)"	peg	gi|49175990|ref|NC_000913.2|_3154645_3155472		Aldo/keto reductases, related to diketogulonate reductase	1.1.1.274	CDS	2,5-diketo-D-gluconic acid reductase A	1.1.1.274	dkgA	
+	3155672	3156598	927	Uncharacterized protein yqhG precursor	peg	gi|49175990|ref|NC_000913.2|_3155672_3156598		Protein of unknown function (DUF3828)./Lumazine-binding domain.		CDS	conserved hypothetical protein			
+	3156649	3156906	258	FIG00638009: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3156649_3156906		Murein lipoprotein		CDS	major outer membrane lipoprotein Lpp		lpp	
-	3156949	3159168	2220	UPF0313 protein ygiQ	peg	gi|49175990|ref|NC_000913.2|_3159168_3156949		uncharacterized radical SAM protein YgiQ		CDS	radical SAM superfamily protein			
-	3159279	3160691	1413	Putative cell division protein precursor	peg	gi|49175990|ref|NC_000913.2|_3160691_3159279		cell division protein SufI		CDS	protein SufI		sufI	
-	3160766	3161503	738	1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	peg	gi|49175990|ref|NC_000913.2|_3161503_3160766		1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51)	2.3.1.51	CDS	1-acyl-sn-glycerol-3-phosphate acyltransferase		plsC	
-	3161737	3163995	2259	Topoisomerase IV subunit A (EC 5.99.1.-)	peg	gi|49175990|ref|NC_000913.2|_3163995_3161737		DNA topoisomerase IV subunit A (EC 5.99.1.3)	5.99.1.-	CDS	DNA topoisomerase IV, A subunit	5.99.1.-	parC	
-	3164133	3165740	1608	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"	peg	gi|49175990|ref|NC_000913.2|_3165740_3164133		ABC-type oligopeptide transport system, periplasmic component		CDS	putative binding protein ygiS			
-	3165873	3166268	396	Antitoxin YgiT	peg	gi|49175990|ref|NC_000913.2|_3166268_3165873		putative zinc finger/helix-turn-helix protein, YgiT family		CDS	antitoxin MqsA		mqsA	
-	3166270	3166566	297				hypothetical protein		CDS				
-	3166771	3167253	483	Uncharacterized protein ygiV	peg	gi|49175990|ref|NC_000913.2|_3167253_3166771		DNA gyrase inhibitor		CDS	gyrI-like small molecule binding domain protein			
-	3167306	3167698	393	Protein ygiW precursor	peg	gi|49175990|ref|NC_000913.2|_3167698_3167306		TIGR00156 family protein		CDS	protein ygiW		ygiW	
+	3167850	3168509	660	Two-component system response regulator QseB	peg	gi|49175990|ref|NC_000913.2|_3167850_3168509		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	response regulator			
+	3168506	3169855	1350	Sensory histidine kinase QseC	peg	gi|49175990|ref|NC_000913.2|_3168506_3169855		Signal transduction histidine kinase	2.7.13.3	CDS	sensor protein qseC	2.7.13.3	qseC	
+	3170552	3171133	582	Modulator of drug activity B	peg	gi|49175990|ref|NC_000913.2|_3170552_3171133		Putative NADPH-quinone reductase (modulator of drug activity B)		CDS	flavodoxin-like fold family protein			
+	3171164	3171478	315	FIG00896075: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3171164_3171478		Uncharacterized conserved protein		CDS	putative quinol monooxygenase ygiN			
-	3171526	3173418	1893	Topoisomerase IV subunit B (EC 5.99.1.-)	peg	gi|49175990|ref|NC_000913.2|_3173418_3171526		DNA topoisomerase IV subunit B (EC 5.99.1.3)	5.99.1.-	CDS	DNA topoisomerase IV, B subunit	5.99.1.-	parE	
-	3173447	3174028	582	"Putative esterase, FIGfam005057"	peg	gi|49175990|ref|NC_000913.2|_3174028_3173447		Predicted esterase		CDS	conserved hypothetical protein			
-	3174028	3174855	828	"3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)"	peg	gi|49175990|ref|NC_000913.2|_3174855_3174028		Predicted phosphohydrolases		CDS	calcineurin-like phosphoesterase family protein			
-	3174880	3175302	423	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_3175302_3174880		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3175303	3175932	630	ADP-ribose pyrophosphatase (EC 3.6.1.13)	peg	gi|49175990|ref|NC_000913.2|_3175932_3175303		nudix-type nucleoside diphosphatase, YffH/AdpP family	3.6.1.13	CDS	ADP-ribose pyrophosphatase	3.6.1.13	nudF	
+	3176137	3177618	1482	"Type I secretion outer membrane protein, TolC precursor"	peg	gi|49175990|ref|NC_000913.2|_3176137_3177618		outer membrane protein tolC (1.B.17.1.1)		CDS	outer membrane protein tolC		tolC	
+	3177766	3178437	672	Possible lipoprotein	peg	gi|49175990|ref|NC_000913.2|_3177862_3178437		Predicted integral membrane protein		CDS	conserved hypothetical protein			
+	3178443	3179603	1161	"Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1"	peg	gi|49175990|ref|NC_000913.2|_3178443_3179603		Glutathionylspermidine synthase		CDS	glutathionylspermidine synthase preATP-grasp family protein			
-	3179641	3180456	816	Uncharacterized protein ygiD	peg	gi|49175990|ref|NC_000913.2|_3180456_3179641		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	3180572	3181345	774	Zinc transporter ZupT	peg	gi|49175990|ref|NC_000913.2|_3180572_3181345		Predicted divalent heavy-metal cations transporter		CDS	zinc transporter ZupT		zupT	
-	3181403	3181573	171	FIG00638054: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3181573_3181403		Protein of unknown function (DUF4051).		CDS	conserved hypothetical protein			
-	3181835	3182488	654	"3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)"	peg	gi|49175990|ref|NC_000913.2|_3182488_3181835		3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	4.1.99.12	CDS	3,4-dihydroxy-2-butanone 4-phosphate synthase	4.1.99.12	ribB	
+	3182862	3183152	291	FIG01200701: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3182862_3183152		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	3183436	3183987	552	Uncharacterized fimbrial-like protein ygiL precursor	peg	gi|49175990|ref|NC_000913.2|_3183436_3183987		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	3184209	3184574	366	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3184209_3184574		Transposase and inactivated derivatives		CDS	transposase family protein			
+	3184532	3185437	906	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3184532_3185437		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	3185422	3187887	2466	Uncharacterized outer membrane usher protein yqiG precursor	peg	gi|49175990|ref|NC_000913.2|_3185422_3187887		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
+	3187903	3188652	750	Hypothetical fimbrial chaperone yqiH	peg	gi|49175990|ref|NC_000913.2|_3187903_3188652		P pilus assembly protein, chaperone PapD		CDS	gram-negative pili assembly chaperone, C-terminal domain protein			
+	3188654	3189718	1065	FIG00639456: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3188654_3189718		Fimbrial protein.		CDS	fimbrial family protein			
-	3189761	3189961	201	glycogen synthesis protein GlgS	peg	gi|49175990|ref|NC_000913.2|_3189961_3189761		Glycogen synthesis protein.		CDS	glycogen synthesis protein glgS		glgS	
+	3190230	3190859	630	FIG00637968: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3190230_3190859		Protein of unknown function (DUF1449).		CDS	inner membrane protein yqiJ		yqiJ	
+	3190886	3192547	1662	Inner membrane protein YqiK	peg	gi|49175990|ref|NC_000913.2|_3190886_3192547		Uncharacterized protein conserved in bacteria		CDS	inner membrane protein yqiK		yqiK	
-	3193342	3194775	1434	ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase	peg	gi|49175990|ref|NC_000913.2|_3194775_3193342		D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC 2.7.1.167)/D-beta-D-heptose 1-phosphate adenylyltransferase (EC 2.7.7.70)	2.7.7.70, 2.7.1.167	CDS	bifunctional protein RfaE, domain I	2.7.1.-	rfaE	
-	3194823	3197663	2841	Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)	peg	gi|49175990|ref|NC_000913.2|_3197663_3194823		Glutamine synthetase adenylyltransferase	2.7.7.42	CDS	glnD PII-uridylyltransferase family protein			
-	3197686	3198987	1302	Adenylate cyclase (EC 4.6.1.1)	peg	gi|49175990|ref|NC_000913.2|_3198987_3197686		Uncharacterized conserved protein		CDS	CYTH domain protein			
-	3199004	3199189	186	FIG00642543: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3199189_3199004								
+	3199229	3199849	621	COG3103: SH3 domain protein	peg	gi|49175990|ref|NC_000913.2|_3199229_3199849		SH3 domain protein		CDS	bacterial SH3 domain protein			
+	3199913	3201151	1239	tRNA nucleotidyltransferase (EC 2.7.7.21) (EC 2.7.7.25)	peg	gi|49175990|ref|NC_000913.2|_3199913_3201151		tRNA nucleotidyltransferase/poly(A) polymerase	2.7.7.72, 3.1.4.-, 3.1.3.-	CDS	multifunctional CCA protein	3.1.3.-	cca	
-	3201332	3202153	822	Undecaprenyl-diphosphatase (EC 3.6.1.27)	peg	gi|49175990|ref|NC_000913.2|_3202144_3201332		undecaprenyl-diphosphatase UppP	3.6.1.27	CDS	undecaprenyl-diphosphatase UppP	3.6.1.27	uppP	
-	3202243	3202611	369	Dihydroneopterin aldolase (EC 4.1.2.25)	peg	gi|49175990|ref|NC_000913.2|_3202611_3202243		dihydroneopterin aldolase	4.1.2.25	CDS	dihydroneopterin aldolase	4.1.2.25	folB	
+	3202716	3203333	618	Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY	peg	gi|49175990|ref|NC_000913.2|_3202716_3203333		acyl-phosphate glycerol-3-phosphate acyltransferase	2.3.1.15	CDS	acyl-phosphate glycerol 3-phosphate acyltransferase	2.3.1.-	plsY	
-	3203346	3204278	933	LysR family transcriptional regulator YgiP	peg	gi|49175990|ref|NC_000913.2|_3204278_3203346		transcriptional regulator, LysR family		CDS	HTH-type transcriptional regulator DmlR		dmlR	
+	3204485	3205396	912	L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32)	peg	gi|49175990|ref|NC_000913.2|_3204485_3205396		hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region	4.2.1.32	CDS	L(+)-tartrate dehydratase subunit alpha	4.2.1.32	ttdA	
+	3205393	3205998	606	L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32)	peg	gi|49175990|ref|NC_000913.2|_3205393_3205998		hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region	4.2.1.32	CDS	L(+)-tartrate dehydratase subunit beta	4.2.1.32	ttdB	
+	3206046	3207509	1464	Citrate Succinate antiporter (TC 2.A.47.3.2)	peg	gi|49175990|ref|NC_000913.2|_3206046_3207509		anion transporter		CDS	L-tartrate/succinate antiporter		ttdT	
-	3207552	3208565	1014	"TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA"	peg	gi|49175990|ref|NC_000913.2|_3208565_3207552		O-sialoglycoprotein endopeptidase (EC 3.4.24.57)	3.4.24.57	CDS	putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp			
+	3208803	3209018	216	SSU ribosomal protein S21p	peg	gi|49175990|ref|NC_000913.2|_3208803_3209018		SSU ribosomal protein S21P		CDS	ribosomal protein S21		rpsU	
+	3209129	3210874	1746	DNA primase (EC 2.7.7.-)	peg	gi|49175990|ref|NC_000913.2|_3209129_3210874		DNA primase (EC 2.7.7.-)	2.7.7.-	CDS	DNA primase	2.7.7.-	dnaG	
+	3211069	3212910	1842	RNA polymerase sigma factor RpoD	peg	gi|49175990|ref|NC_000913.2|_3211069_3212910		RNA polymerase, sigma 70 subunit, RpoD		CDS	RNA polymerase sigma factor rpoD		rpoD	
-	3212989	3213495	507	G:T/U mismatch-specific uracil/thymine DNA-glycosylase	peg	gi|49175990|ref|NC_000913.2|_3213495_3212989		G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-)	3.2.2.-	CDS	G/U mismatch-specific DNA glycosylase	3.2.2.28	mug	
-	3213749	3214513	765	iron-chelator utilization protein	peg	gi|49175990|ref|NC_000913.2|_3214513_3213749		Siderophore-interacting protein		CDS	siderophore-interacting FAD-binding domain protein			
+	3214801	3215424	624	"Transcriptional regulator, PadR family"	peg	gi|49175990|ref|NC_000913.2|_3214801_3215424		transcriptional regulator, PadR family		CDS	transcriptional regulator PadR-like family protein			
-	3215578	3217098	1521	Aerotaxis sensor receptor protein	peg	gi|49175990|ref|NC_000913.2|_3217098_3215578		methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor		CDS	aerotaxis receptor		aer	
+	3217405	3218895	1491	Putrescine aminotransferase (EC 2.6.1.82)	peg	gi|49175990|ref|NC_000913.2|_3217516_3218895		diamine aminotransferase apoenzyme (EC 2.6.1.29)	2.6.1.82	CDS	putrescine aminotransferase	2.6.1.82	ygjG	
-	3218937	3219269	333	tRNA-binding protein YgjH	peg	gi|49175990|ref|NC_000913.2|_3219269_3218937		EMAP domain		CDS	putative tRNA binding domain protein			
+	3219488	3220471	984	Evolved beta-D-galactosidase transcriptional repressor	peg	gi|49175990|ref|NC_000913.2|_3219488_3220471		transcriptional regulator, LacI family		CDS	periplasmic binding s and sugar binding domain of LacI family protein			
+	3220655	3223747	3093	"Evolved beta-D-galactosidase, alpha subunit"	peg	gi|49175990|ref|NC_000913.2|_3220655_3223747		Beta-galactosidase/beta-glucuronidase	3.2.1.23	CDS	evolved beta-galactosidase subunit alpha	3.2.1.23	ebgA	
+	3223744	3224193	450	"Evolved beta-D-galactosidase, beta subunit"	peg	gi|49175990|ref|NC_000913.2|_3223744_3224193		Beta-galactosidase, beta subunit		CDS	conserved hypothetical protein			
+	3224256	3225689	1434	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_3224256_3225689		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	inner membrane transporter ygjI		ygjI	
+	3225823	3226893	1071	FIG00639150: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3225823_3226893		hypothetical protein		CDS	conserved hypothetical protein			
+	3226910	3229261	2352	Putative isomerase	peg	gi|49175990|ref|NC_000913.2|_3226910_3229261		Glycogen debranching enzyme		CDS	conserved hypothetical protein			
+	3229687	3231705	2019	"2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)"	peg	gi|49175990|ref|NC_000913.2|_3229687_3231705		2,4-dienoyl-CoA reductase (EC 1.3.1.34)	1.3.1.34	CDS	2,4-dienoyl-CoA reductase [NADPH]	1.3.1.34	fadH	
-	3231750	3232166	417	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_3232166_3231750		Predicted transcription regulator containing HTH domain		CDS	antitoxin HigA		higA	
-	3232163	3232477	315	FIG00639506: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3232477_3232163		Uncharacterized protein conserved in bacteria		CDS	mRNA interferase HigB	3.1.-.-	higB	
-	3232761	3233897	1137	23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_3233897_3232761		16S RNA G1207 methylase RsmC	2.1.1.174	CDS	ribosomal RNA large subunit methyltransferase G	2.1.1.174	rlmG	
+	3233982	3234485	504	COG1451: Predicted metal-dependent hydrolase	peg	gi|49175990|ref|NC_000913.2|_3233982_3234485		Predicted metal-dependent hydrolase		CDS	conserved hypothetical protein			
+	3234562	3235254	693	SanA protein	peg	gi|49175990|ref|NC_000913.2|_3234562_3235254		Uncharacterized membrane protein		CDS	conserved hypothetical protein			
+	3235333	3236319	987	Possible oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_3235333_3236319		Predicted dehydrogenases and related proteins		CDS	oxidoreductase , NAD-binding Rossmann fold family protein			
+	3236602	3237567	966	Integral membrane protein TerC	peg	gi|49175990|ref|NC_000913.2|_3236602_3237567		integral membrane protein, TerC family		CDS	integral membrane , TerC family protein			
+	3237966	3239210	1245	Sodium:dicarboxylate symporter	peg	gi|49175990|ref|NC_000913.2|_3237966_3239210		Na+/serine symporter		CDS	sodium:dicarboxylate symporter family protein			
-	3239215	3239766	552	Inner membrane protein ygjV	peg	gi|49175990|ref|NC_000913.2|_3239766_3239215		Bacterial inner membrane protein.		CDS	inner membrane protein ygjV		ygjV	
-	3239849	3241336	1488	Altronate hydrolase (EC 4.2.1.7)	peg	gi|49175990|ref|NC_000913.2|_3241336_3239849		D-altronate dehydratase (EC 4.2.1.7)	4.2.1.7	CDS	altronate hydrolase		uxaA	
-	3241351	3242763	1413	Uronate isomerase (EC 5.3.1.12)	peg	gi|49175990|ref|NC_000913.2|_3242763_3241351		D-glucuronate isomerase (EC 5.3.1.12)	5.3.1.12	CDS	glucuronate isomerase family protein			
+	3243246	3244544	1299	Hexuronate transporter	peg	gi|49175990|ref|NC_000913.2|_3243246_3244544		D-galactonate transporter		CDS	hexuronate transporter		exuT	
+	3244674	3245450	777	Hexuronate utilization operon transcriptional repressor ExuR	peg	gi|49175990|ref|NC_000913.2|_3244674_3245450		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	3245795	3246457	663	DedA family inner membrane protein YqjA	peg	gi|49175990|ref|NC_000913.2|_3245795_3246457		Uncharacterized membrane-associated protein		CDS	inner membrane protein YqjA		yqjA	
+	3246461	3246844	384	Uncharacterized protein YqjB	peg	gi|49175990|ref|NC_000913.2|_3246476_3246844		SecD export protein N-terminal TM region.		CDS	secD export N-terminal TM region family protein			
+	3246991	3247359	369	Periplasmic protein YqjC	peg	gi|49175990|ref|NC_000913.2|_3246991_3247359		Valyl-tRNA synthetase		CDS	protein yqjC		yqjC	
+	3247397	3247702	306	Uncharacterized membrane protein YqjD	peg	gi|49175990|ref|NC_000913.2|_3247397_3247702		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	3247705	3248109	405	Inner membrane protein YqjE	peg	gi|49175990|ref|NC_000913.2|_3247705_3248109		Predicted membrane protein		CDS	inner membrane protein yqjE		yqjE	
+	3248099	3248398	300	Inner membrane protein YqjK	peg	gi|49175990|ref|NC_000913.2|_3248099_3248398		YqjK-like protein.		CDS	yqjK-like family protein			
+	3248494	3248976	483	Inner membrane protein YqjF	peg	gi|49175990|ref|NC_000913.2|_3248494_3248976		Predicted membrane protein		CDS	inner membrane protein yqjF		yqjF	
+	3249046	3250032	987	"Glutathione S-transferase, omega (EC 2.5.1.18)"	peg	gi|49175990|ref|NC_000913.2|_3249046_3250032		Predicted glutathione S-transferase		CDS	glutathione S-transferase, C-terminal domain protein			
+	3250326	3250691	366	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3250326_3250691		Predicted membrane protein		CDS	inner membrane protein yhaH		yhaH	
+	3250933	3251289	357	Inner membrane protein YhaI	peg	gi|49175990|ref|NC_000913.2|_3250933_3251289		Predicted membrane protein		CDS	inner membrane protein yhaI		yhaI	
-	3251340	3252236	897	LysR-family transcriptional regulator YhaJ	peg	gi|49175990|ref|NC_000913.2|_3252236_3251340		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	3252341	3253042	702	Pirin-like protein YhaK	peg	gi|49175990|ref|NC_000913.2|_3252440_3253042		Pirin-related protein		CDS	pirin-like protein yhaK		yhaK	
+	3253062	3253229	168	Uncharacterized protein YhaL	peg	gi|49175990|ref|NC_000913.2|_3253062_3253229		hypothetical protein		CDS	conserved hypothetical protein			
-	3253363	3254673	1311	Inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_3254673_3253363		Uncharacterized conserved protein		CDS	serine dehydratase alpha chain family protein			
-	3254701	3256032	1332	Serine transporter	peg	gi|49175990|ref|NC_000913.2|_3256032_3254701		Amino acid permeases		CDS	inner membrane transport protein YhaO		yhaO	
-	3256307	3257671	1365	L-serine dehydratase (EC 4.3.1.17)	peg	gi|49175990|ref|NC_000913.2|_3257671_3256307		L-serine dehydratase, iron-sulfur-dependent, single chain form	4.3.1.17	CDS	L-serine ammonia-lyase	4.3.1.17		
-	3257743	3258132	390	Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate	peg	gi|49175990|ref|NC_000913.2|_3258132_3257743		endoribonuclease L-PSP, putative		CDS	protein tdcF		tdcF	
-	3258146	3260440	2295	2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)	peg	gi|49175990|ref|NC_000913.2|_3260440_3258146		keto acid formate lyase (EC 2.3.1.-)	2.3.1.54	CDS	formate acetyltransferase	2.3.1.54	pflB	
-	3260474	3261682	1209	Acetate kinase (EC 2.7.2.1) @ Propionate kinase (EC 2.7.2.15)	peg	gi|49175990|ref|NC_000913.2|_3261682_3260474		propanoate kinase (EC 2.7.2.-)/acetate kinase (EC 2.7.2.1)	2.7.2.15	CDS	acetate kinase	2.7.2.1	ackA	
-	3261708	3263039	1332	"L-threonine transporter, anaerobically inducible"	peg	gi|49175990|ref|NC_000913.2|_3263039_3261708		serine transporter		CDS	serine transporter		sdaC	
-	3263061	3264050	990	"Threonine dehydratase, catabolic (EC 4.3.1.19)"	peg	gi|49175990|ref|NC_000913.2|_3264050_3263061		L-threonine ammonia-lyase (EC 4.3.1.19)	4.3.1.19	CDS	threonine ammonia-lyase	4.3.1.19	ilvA	
-	3264149	3265087	939	Threonine catabolic operon transcriptional activator TdcA	peg	gi|49175990|ref|NC_000913.2|_3265087_3264149		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	3265876	3266415	540	"orf, hypothetical protein"	peg	gi|49175990|ref|NC_000913.2|_3265876_3266415		hypothetical protein		CDS	conserved hypothetical protein			
+	3266437	3267624	1188	FIG00638045: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3266437_3267624		hypothetical protein		CDS	conserved hypothetical protein			
-	3267704	3267856	153	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3267856_3267704								
-	3268238	3268614	377										
-	3268647	3269792	1146	Glycerate-2-kinase (EC 2.7.1.165)	peg	gi|49175990|ref|NC_000913.2|_3269792_3268647		glycerate kinase	2.7.1.31	CDS	glycerate kinase 2	2.7.1.31	garK	
-	3269889	3270788	900	2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)	peg	gi|49175990|ref|NC_000913.2|_3270788_3269889		tartronate semialdehyde reductase (EC 1.1.1.60)	1.1.1.60	CDS	2-hydroxy-3-oxopropionate reductase	1.1.1.60		
-	3270809	3271579	771	2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)	peg	gi|49175990|ref|NC_000913.2|_3271579_3270809		5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20)	4.1.2.20	CDS	2-dehydro-3-deoxyglucarate aldolase	4.1.2.20	garL	
-	3271595	3272929	1335	D-galactarate permease @ D-glucarate permease	peg	gi|49175990|ref|NC_000913.2|_3272929_3271595		D-galactonate transporter		CDS	putative galactarate transporter			
+	3273304	3274875	1572	D-galactarate dehydratase (EC 4.2.1.42)	peg	gi|49175990|ref|NC_000913.2|_3273304_3274875		galactarate dehydratase (EC 4.2.1.42)	4.2.1.42	CDS	galactarate dehydratase	4.2.1.42	garD	
+	3275024	3275359	336	HtrA suppressor protein	peg	gi|49175990|ref|NC_000913.2|_3275219_3275359		transcriptional regulator, AbrB family		CDS	antitoxin PrlF		sohA	
+	3275359	3275823	465	Uncharacterized protein yhaV	peg	gi|49175990|ref|NC_000913.2|_3275359_3275823		Toxin with endonuclease activity YhaV.		CDS	toxin YhaV	3.1.-.-	yhaV	
-	3275878	3276687	810	Transcriptional repressor of aga operon	peg	gi|49175990|ref|NC_000913.2|_3276687_3275878		transcriptional regulator, DeoR family		CDS	deoR-like helix-turn-helix domain protein			
+	3276936	3278216	1281	Tagatose-6-phosphate kinase AgaZ (EC 2.7.1.144)	peg	gi|49175990|ref|NC_000913.2|_3276936_3278216		tagatose-bisphosphate aldolase noncatalytic subunit	2.7.1.144	CDS	D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit	4.1.2.40		
+	3278239	3278712	474	"PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3278239_3278712		PTS system N-acetylgalactosamine-specific EIIB component, Man family (TC 4.A.6.1.4)	2.7.1.69	CDS	PTS system, mannose/fructose/sorbose , IIB component family protein	2.7.1.69		
+	3278723	3279124	402	"PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3278723_3279124		Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC		CDS	PTS system sorbose-specific iic component family protein			
+	3279144	3279647	504	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	peg	gi|49175990|ref|NC_000913.2|_3279144_3279647		N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25	CDS	amidohydrolase family protein			
+	3279998	3281152	1155	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_3279998_3281152		galactosamine 6-phosphate isomerase AgaS	5.-	CDS	putative tagatose-6-phosphate ketose/aldose isomerase			
+	3281165	3282025	861	"Tagatose 1,6-bisphosphate aldolase (EC 4.1.2.40)"	peg	gi|49175990|ref|NC_000913.2|_3281165_3282025		tagatose-bisphosphate aldolase catalytic subunit	4.1.2.40	CDS	class II aldolase, tagatose bisphosphate family	4.1.2.-		
+	3282192	3282668	477	"PTS system, galactosamine-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3282192_3282668		PTS system D-galactosamine-specific EIIB component, Man family (TC 4.A.6.1.5)	2.7.1.69	CDS	galactosamine-specific PTS system enzyme IIB component		agaB	
+	3282707	3283510	804	"PTS system, galactosamine-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3282707_3283510		PTS system D-galactosamine-specific EIIC component, Man family (TC 4.A.6.1.5)		CDS	PTS system, mannose/fructose/sorbose , IIC component family protein			
+	3283500	3284291	792	"PTS system, galactosamine-specific IID component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3283500_3284291		PTS system D-galactosamine-specific EIID component, Man family (TC 4.A.6.1.5)		CDS	PTS system, mannose/fructose/sorbose , IID component family protein			
+	3284346	3285047	702	Galactosamine-6-phosphate isomerase (galactosamine-6-phosphate deaminase) (EC 5.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_3284346_3285047		galactosamine 6-phosphate isomerase AgaI	5.3.1.-	CDS	glucosamine-6-phosphate isomerases/6-phosphogluconolactonase family protein			
+	3285448	3286032	585	Putative fimbrial-like protein	peg	gi|49175990|ref|NC_000913.2|_3285448_3286032		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	3286112	3286807	696	Chaperone protein fimC precursor	peg	gi|49175990|ref|NC_000913.2|_3286112_3286807		P pilus assembly protein, chaperone PapD		CDS	gram-negative pili assembly chaperone, C-terminal domain protein			
+	3286761	3289352	2592	type 1 fimbriae anchoring protein FimD	peg	gi|49175990|ref|NC_000913.2|_3286761_3289352		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
+	3289363	3290454	1092	FIG085450: fimbrial protein	peg	gi|49175990|ref|NC_000913.2|_3289363_3290454		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
-	3290497	3291357	861	rRNA small subunit methyltransferase I	peg	gi|49175990|ref|NC_000913.2|_3291357_3290497		probable S-adenosylmethionine-dependent methyltransferase, YraL family	2.1.1.198	CDS	ribosomal RNA small subunit methyltransferase I	2.1.1.198	rsmI	
+	3291422	3293458	2037	LppC putative lipoprotein	peg	gi|49175990|ref|NC_000913.2|_3291422_3293458		Putative lipoprotein		CDS	penicillin-binding protein activator LpoA		lpoA	
+	3293416	3293811	396	Predicted endonuclease distantly related to archaeal Holliday junction resolvase	peg	gi|49175990|ref|NC_000913.2|_3293416_3293811		TIGR00252 family protein		CDS	conserved hypothetical protein			
+	3293831	3294421	591	Phosphoheptose isomerase (EC 5.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_3293831_3294421		DnaA-interacting protein DiaA		CDS	SIS domain protein			
+	3294431	3295006	576	21 kDa hemolysin precursor	peg	gi|49175990|ref|NC_000913.2|_3294431_3295006		Predicted periplasmic or secreted lipoprotein		CDS	BON domain protein			
-	3295120	3296160	1041	FIG006303: protein yraQ	peg	gi|49175990|ref|NC_000913.2|_3296160_3295120		Predicted permeases		CDS	putative permease family protein			
-	3296233	3296868	636	Oxidoreductase (EC 1.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_3296868_3296233		Predicted nucleoside-diphosphate-sugar epimerases		CDS	NAD dependent epimerase/dehydratase family protein			
-	3297494	3297937	444	FIG01219785: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3297937_3297494		Uncharacterized protein conserved in bacteria		CDS	putative uPF0306 protein yhbP			
+	3296996	3297514	519	General stress protein 18	peg	gi|49175990|ref|NC_000913.2|_3296996_3297514		intracellular protease, PfpI family	3.2.-	CDS	general stress protein 18	3.2.-.-	yfkM	
-	3298277	3298780	504	FIG002208: Acetyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_3298780_3298277		Predicted acetyltransferase	2.3.1.-	CDS	acetyltransferase family protein			
+	3297988	3298290	303	FIG137864: putative endonuclease containing a URI domain	peg	gi|49175990|ref|NC_000913.2|_3298009_3298290		Predicted endonuclease containing a URI domain		CDS	GIY-YIG catalytic domain protein			
-	3298774	3299298	525	FIG138517: Putative lipid carrier protein	peg	gi|49175990|ref|NC_000913.2|_3299298_3298774		Putative lipid carrier protein		CDS	conserved hypothetical protein			
+	3299507	3300502	996	FIG139552: Putative protease	peg	gi|49175990|ref|NC_000913.2|_3299507_3300502		Collagenase and related proteases	3.4.-	CDS	conserved hypothetical protein			
+	3300511	3301389	879	FIG139928: Putative protease	peg	gi|49175990|ref|NC_000913.2|_3300511_3301389		Collagenase and related proteases		CDS	peptidase U32 family protein			
+	3301470	3302477	1008	Luciferase-like monooxygenase (EC 1.14.-.-)	peg	gi|49175990|ref|NC_000913.2|_3301470_3302477		luciferase family oxidoreductase, group 1		CDS	luciferase oxidoreductase, group 1 family protein	1.-.-.-		
-	3302595	3303839	1245	Tryptophan-specific transport protein	peg	gi|49175990|ref|NC_000913.2|_3303839_3302595		aromatic amino acid transport protein		CDS	tryptophan-specific transport protein		mtr	
-	3303993	3305882	1890	Cold-shock DEAD-box protein A	peg	gi|49175990|ref|NC_000913.2|_3305882_3303993		ATP-dependent RNA helicase CsdA (EC 5.99.1.-)	3.6.4.13	CDS	cold-shock DEAD box protein A	3.6.4.13	deaD	
-	3306062	3306946	885	Lipoprotein nlpI precursor	peg	gi|49175990|ref|NC_000913.2|_3306946_3306062		Lipoprotein NlpI, contains TPR repeats		CDS	lipoprotein nlpI		nlpI	
-	3307055	3309190	2136	Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)	peg	gi|49175990|ref|NC_000913.2|_3309190_3307055		polyribonucleotide nucleotidyltransferase	2.7.7.8	CDS	polyribonucleotide nucleotidyltransferase	2.7.7.8	pnp	
+	3309249	3309420	172										
-	3309437	3309706	270	SSU ribosomal protein S15p (S13e)	peg	gi|49175990|ref|NC_000913.2|_3309706_3309437		SSU ribosomal protein S15P		CDS	ribosomal protein S15		rpsO	
-	3309855	3310799	945	tRNA pseudouridine synthase B (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_3310799_3309855		tRNA pseudouridine synthase B (EC 4.2.1.70)	5.4.99.25	CDS	tRNA pseudouridine(55) synthase	5.4.99.25	truB	
-	3310799	3311200	402	Ribosome-binding factor A	peg	gi|49175990|ref|NC_000913.2|_3311200_3310799		ribosome-binding factor A		CDS	ribosome-binding factor A		rbfA	
-	3311364	3314036	2673	Translation initiation factor 2	peg	gi|49175990|ref|NC_000913.2|_3314036_3311364		bacterial translation initiation factor 2 (bIF-2)		CDS	translation initiation factor IF-2		infB	
-	3314061	3315548	1488	Transcription termination protein NusA	peg	gi|49175990|ref|NC_000913.2|_3315548_3314061		NusA antitermination factor		CDS	transcription elongation protein nusA		nusA	
-	3315576	3316028	453	FIG000325: clustered with transcription termination protein NusA	peg	gi|49175990|ref|NC_000913.2|_3315998_3315576		Uncharacterized protein conserved in bacteria		CDS	ribosome maturation factor rimP		rimP	
+	3316659	3318002	1344	Argininosuccinate synthase (EC 6.3.4.5)	peg	gi|49175990|ref|NC_000913.2|_3316659_3318002		argininosuccinate synthase (EC 6.3.4.5)	6.3.4.5	CDS	argininosuccinate synthase	6.3.4.5	argG	
-	3318010	3319527	1518	Outer-membrane protein yhbX precursor	peg	gi|49175990|ref|NC_000913.2|_3319527_3318010		Predicted membrane-associated, metal-dependent hydrolase		CDS	putative phosphoethanolamine transferase yhbX			
-	3320195	3320527	333	Preprotein translocase subunit SecG (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_3320527_3320195		protein translocase subunit secG		CDS	preprotein translocase, SecG subunit		secG	
-	3320755	3322092	1338	Phosphoglucosamine mutase (EC 5.4.2.10)	peg	gi|49175990|ref|NC_000913.2|_3322092_3320755		phosphoglucosamine mutase (EC 5.4.2.10)	5.4.2.10	CDS	phosphoglucosamine mutase	5.4.2.10	glmM	
-	3322085	3322933	849	Dihydropteroate synthase (EC 2.5.1.15)	peg	gi|49175990|ref|NC_000913.2|_3322933_3322085		Dihydropteroate synthase (EC 2.5.1.15)	2.5.1.15	CDS	dihydropteroate synthase	2.5.1.15	folP	
-	3323023	3324966	1944	Cell division protein FtsH (EC 3.4.24.-)	peg	gi|49175990|ref|NC_000913.2|_3324957_3323023		membrane protease FtsH catalytic subunit (EC 3.4.24.-)	3.4.24.-	CDS	ATP-dependent zinc metalloprotease FtsH	3.4.24.-	ftsH	
-	3325057	3325686	630	Cell division protein FtsJ / Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) ## LSU rRNA Um2552	peg	gi|49175990|ref|NC_000913.2|_3325686_3325057		23S rRNA Um-2552 2'-O-methyltransferase (EC 2.1.1.166)	2.1.1.166	CDS	ribosomal RNA large subunit methyltransferase J	2.1.1.166	rrmJ	
+	3325812	3326105	294	FIG004454: RNA binding protein	peg	gi|49175990|ref|NC_000913.2|_3325812_3326105		putative RNA-binding protein, YhbY family		CDS	RNA-binding protein YhbY		yhbY	
-	3326261	3326737	477	Transcription elongation factor GreA	peg	gi|49175990|ref|NC_000913.2|_3326737_3326261		transcription elongation factor GreA		CDS	transcription elongation factor greA		greA	
+	3326985	3328418	1434	D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)	peg	gi|49175990|ref|NC_000913.2|_3326985_3328418		D-Ala-D-Ala peptidase C. Serine peptidase. MEROPS family S13	3.4.16.4, 3.4.21.-	CDS	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	3.4.16.4	dacB	
-	3328604	3329776	1173	GTP-binding protein Obg	peg	gi|49175990|ref|NC_000913.2|_3329776_3328604		Obg family GTPase CgtA		CDS	obg family GTPase CgtA		cgtA	
-	3329792	3330757	966	Permease of the drug/metabolite transporter (DMT) superfamily	peg	gi|49175990|ref|NC_000913.2|_3330757_3329792		Predicted permeases		CDS	conserved hypothetical protein			
-	3330884	3331141	258	LSU ribosomal protein L27p	peg	gi|49175990|ref|NC_000913.2|_3331141_3330884		LSU ribosomal protein L27P		CDS	ribosomal protein L27		rpmA	
-	3331162	3331473	312	LSU ribosomal protein L21p	peg	gi|49175990|ref|NC_000913.2|_3331473_3331162		LSU ribosomal protein L21P		CDS	ribosomal protein L21		rplU	
+	3331732	3332703	972	COG0142: Geranylgeranyl pyrophosphate synthase	peg	gi|49175990|ref|NC_000913.2|_3331732_3332703		Geranylgeranyl pyrophosphate synthase	2.5.1.90	CDS	octaprenyl-diphosphate synthase	2.5.1.90	ispB	
+	3332931	3333209	279	Ner-like regulatory protein	peg	gi|49175990|ref|NC_000913.2|_3332931_3333209		transcriptional regulator, Nlp family		CDS	winged helix-turn-helix DNA-binding family protein			
-	3333257	3334516	1260	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	peg	gi|49175990|ref|NC_000913.2|_3334516_3333257		UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	2.5.1.7	CDS	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	2.5.1.7	murA	
-	3334571	3334840	270	YrbA protein	peg	gi|49175990|ref|NC_000913.2|_3334840_3334571		Predicted transcriptional regulator, BolA superfamily		CDS	bolA-like family protein			
-	3334985	3335278	294	Uncharacterized protein YrbB	peg	gi|49175990|ref|NC_000913.2|_3335278_3334985		Predicted NTP binding protein (contains STAS domain)		CDS	putative phospholipid ABC transporter-binding protein mlaB			
-	3335278	3335913	636	"Uncharacterized ABC transporter, auxiliary component YrbC"	peg	gi|49175990|ref|NC_000913.2|_3335913_3335278		ABC-type transport system involved in resistance to organic solvents, auxiliary component		CDS	putative phospholipid-binding protein mlaC			
-	3335932	3336483	552	"Uncharacterized ABC transporter, periplasmic component YrbD"	peg	gi|49175990|ref|NC_000913.2|_3336483_3335932		ABC-type transport system involved in resistance to organic solvents, periplasmic component		CDS	putative phospholipid ABC transporter-binding protein mlaD			
-	3336488	3337270	783	"Uncharacterized ABC transporter, permease component YrbE"	peg	gi|49175990|ref|NC_000913.2|_3337270_3336488		conserved hypothetical integral membrane protein		CDS	putative phospholipid ABC transporter permease protein mlaE			
-	3337278	3338087	810	"Uncharacterized ABC transporter, ATP-binding protein YrbF"	peg	gi|49175990|ref|NC_000913.2|_3338087_3337278		ABC-type transport system involved in resistance to organic solvents, ATPase component		CDS	putative phospholipid import ATP-binding protein MlaF			
+	3338297	3339274	978	"Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter"	peg	gi|49175990|ref|NC_000913.2|_3338297_3339274		K+-dependent Na+/Ca+ exchanger related-protein		CDS	inner membrane protein yrbG		yrbG	
+	3339288	3340274	987	Arabinose 5-phosphate isomerase (EC 5.3.1.13)	peg	gi|49175990|ref|NC_000913.2|_3339288_3340274		KpsF/GutQ family protein	5.3.1.13	CDS	arabinose 5-phosphate isomerase KdsD	5.3.1.13	kdsD	
+	3340295	3340861	567	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45)	peg	gi|49175990|ref|NC_000913.2|_3340295_3340861		3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family	3.1.3.45	CDS	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC	3.1.3.45	kdsC	
+	3340858	3341433	576	Uncharacterized protein YrbK clustered with lipopolysaccharide transporters	peg	gi|49175990|ref|NC_000913.2|_3340858_3341433		Uncharacterized protein conserved in bacteria		CDS	lipopolysaccharide export system protein lptC		lptC	
+	3341402	3341959	558	"LptA, protein essential for LPS transport across the periplasm"	peg	gi|49175990|ref|NC_000913.2|_3341402_3341959		lipopolysaccharide transport periplasmic protein LptA		CDS	lipopolysaccharide transport periplasmic protein LptA		lptA	
+	3341966	3342691	726	"Lipopolysaccharide ABC transporter, ATP-binding protein LptB"	peg	gi|49175990|ref|NC_000913.2|_3341966_3342691		ABC-type (unclassified) transport system, ATPase component	3.6.3.-	CDS	lipopolysaccharide export system ATP-binding protein LptB	3.6.3.-	lptB	
+	3342739	3344172	1434	RNA polymerase sigma-54 factor RpoN	peg	gi|49175990|ref|NC_000913.2|_3342739_3344172		RNA polymerase, sigma 54 subunit, RpoN/SigL		CDS	RNA polymerase sigma-54 factor		rpoN	
+	3344195	3344482	288	Ribosome hibernation protein YhbH	peg	gi|49175990|ref|NC_000913.2|_3344195_3344482		ribosomal subunit interface protein		CDS	ribosomal subunit interface protein		raiA	
+	3344600	3345091	492	PTS IIA-like nitrogen-regulatory protein PtsN	peg	gi|49175990|ref|NC_000913.2|_3344600_3345091		PTS IIA-like nitrogen-regulatory protein PtsN	2.7.1.69	CDS	PTS IIA-like nitrogen-regulatory protein PtsN		ptsN	
+	3345137	3345991	855	FIG000506: Predicted P-loop-containing kinase	peg	gi|49175990|ref|NC_000913.2|_3345137_3345991		Predicted P-loop-containing kinase		CDS	conserved hypothetical protein			
+	3345988	3346260	273	"Phosphocarrier protein, nitrogen regulation associated"	peg	gi|49175990|ref|NC_000913.2|_3346048_3346260		HPr-like nitrogen-regulatory protein NPr		CDS	phosphocarrier protein NPr	2.7.11.-	ptsO	
-	3347103	3347831	729	Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)	peg	gi|49175990|ref|NC_000913.2|_3347831_3347103		monofunctional biosynthetic peptidoglycan transglycosylase	2.4.1.-	CDS	monofunctional biosynthetic peptidoglycan transglycosylase	2.4.2.-	mtgA	
+	3346474	3347106	633	Putative uncharacterized protein YrbL	peg	gi|49175990|ref|NC_000913.2|_3346474_3347106		PhoP regulatory network protein YrbL.		CDS	phoP regulatory network YrbL family protein			
-	3347828	3348481	654	Sigma cross-reacting protein 27A	peg	gi|49175990|ref|NC_000913.2|_3348481_3347828		Uncharacterized protein involved in an early stage of isoprenoid biosynthesis		CDS	enhancing lycopene biosynthesis protein 2		elbB	
-	3348711	3351047	2337	Aerobic respiration control sensor protein arcB (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_3351047_3348711		PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	aerobic respiration control sensor protein ArcB	2.7.13.3	arcB	
-	3351143	3352072	930	COG1242: Predicted Fe-S oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_3352072_3351143		radical SAM protein, TIGR01212 family		CDS	radical SAM superfamily protein			
+	3352654	3357207	4554	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	peg	gi|49175990|ref|NC_000913.2|_3352654_3357207		glutamate synthase (NADPH) large subunit (EC 1.4.1.13)	1.4.1.14, 1.4.1.13	CDS	glutamate synthase [NADPH] large chain	1.4.1.13	gltB	
+	3357220	3358638	1419	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	peg	gi|49175990|ref|NC_000913.2|_3357220_3358638		glutamate synthase (NADPH) small subunit (EC 1.4.1.13)	1.4.1.14, 1.4.1.13	CDS	glutamate synthase [NADPH] small chain	1.4.1.13	gltD	
+	3359198	3359962	765	Beta-fimbriae probable major subunit	peg	gi|49175990|ref|NC_000913.2|_3359198_3359962		Protein of unknown function (DUF1120).		CDS	conserved hypothetical protein			
+	3360134	3360808	675	Beta-fimbriae chaperone protein	peg	gi|49175990|ref|NC_000913.2|_3360134_3360808		P pilus assembly protein, chaperone PapD		CDS	conserved hypothetical protein			
+	3360829	3363210	2382	Beta-fimbriae usher protein	peg	gi|49175990|ref|NC_000913.2|_3360829_3363210		P pilus assembly protein, porin PapC		CDS	type VII secretion system (T7SS), usher family protein			
+	3363207	3363686	480	"PTS system, mannitol-specific IIABC component (EIIABC-Mtl) (Mannitol- permease IIABC component) (Phosphotransferase enzyme II, ABC component) (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3363207_3363686		hypothetical protein		CDS	secF domain protein			
-	3363724	3364740	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3364740_3363724		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
+	3364706	3364951	246	Uncharacterized protein yhcE	peg	gi|49175990|ref|NC_000913.2|_3364805_3364951		hypothetical protein		CDS	conserved hypothetical protein			
+	3364948	3365664	717	Beta-fimbriae probable major subunit	peg	gi|49175990|ref|NC_000913.2|_3364948_3365664		Protein of unknown function (DUF1120).		CDS	fimbrial family protein			
+	3365849	3366976	1128	Putative uncharacterized protein YhcG	peg	gi|49175990|ref|NC_000913.2|_3365849_3366976		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	3367036	3367500	465	Putative sugar isomerase involved in processing of exogenous sialic acid	peg	gi|49175990|ref|NC_000913.2|_3367500_3367036		uncharacterized protein, YhcH/YjgK/YiaL family		CDS	conserved hypothetical protein			
-	3367497	3368372	876	N-acetylmannosamine kinase (EC 2.7.1.60)	peg	gi|49175990|ref|NC_000913.2|_3368372_3367497		N-acetylmannosamine kinase (EC 2.7.1.60)	2.7.1.60	CDS	ROK family protein			
-	3368369	3369058	690	N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)	peg	gi|49175990|ref|NC_000913.2|_3369058_3368369		Putative N-acetylmannosamine-6-phosphate epimerase	5.1.3.9	CDS	putative N-acetylmannosamine-6-phosphate 2-epimerase			
-	3369106	3370596	1491	Sialic acid transporter (permease) NanT	peg	gi|49175990|ref|NC_000913.2|_3370596_3369106		putative sialic acid transporter		CDS	putative sialic acid transporter			
-	3370705	3371598	894	N-acetylneuraminate lyase (EC 4.1.3.3)	peg	gi|49175990|ref|NC_000913.2|_3371598_3370705		N-acetylneuraminate lyase	4.1.3.3	CDS	N-acetylneuraminate lyase	4.1.3.3	nanA	
-	3371720	3372511	792	Transcriptional regulator NanR	peg	gi|49175990|ref|NC_000913.2|_3372502_3371720		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	3372891	3374258	1368	Putative cryptic C4-dicarboxylate transporter DcuD	peg	gi|49175990|ref|NC_000913.2|_3372891_3374258		c4-dicarboxylate anaerobic carrier family protein		CDS	putative cryptic C4-dicarboxylate transporter DcuD			
-	3374301	3374798	498	ClpXP protease specificity-enhancing factor / Stringent starvation protein B	peg	gi|49175990|ref|NC_000913.2|_3374798_3374301		Stringent starvation protein B		CDS	stringent starvation protein B		sspB	
-	3374804	3375442	639	Stringent starvation protein A	peg	gi|49175990|ref|NC_000913.2|_3375442_3374804		Glutathione S-transferase		CDS	glutathione S-transferase, C-terminal domain protein			
-	3375837	3376229	393	SSU ribosomal protein S9p (S16e)	peg	gi|49175990|ref|NC_000913.2|_3376229_3375837		SSU ribosomal protein S9P		CDS	30S ribosomal protein S9		rpsI	
-	3376245	3376673	429	LSU ribosomal protein L13p (L13Ae)	peg	gi|49175990|ref|NC_000913.2|_3376673_3376245		LSU ribosomal protein L13P		CDS	ribosomal protein L13		rplM	
-	3376892	3378019	1128	"ATPase, AFG1 family"	peg	gi|49175990|ref|NC_000913.2|_3378019_3376892		Predicted ATPase		CDS	conserved hypothetical protein			
+	3378213	3378611	399	Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III)	peg	gi|49175990|ref|NC_000913.2|_3378213_3378611		Uncharacterized protein conserved in bacteria		CDS	putative cytochrome d ubiquinol oxidase subunit 3			
+	3378765	3380132	1368	"Outer membrane stress sensor protease DegQ, serine protease"	peg	gi|49175990|ref|NC_000913.2|_3378765_3380132		DegQ peptidase. Serine peptidase. MEROPS family S01B	3.4.21.-	CDS	protease degQ	3.4.21.-	degQ	
+	3380222	3381289	1068	Outer membrane stress sensor protease DegS	peg	gi|49175990|ref|NC_000913.2|_3380222_3381289		DegS peptidase. Serine peptidase. MEROPS family S01B	3.4.21.-	CDS	periplasmic serine peptidase DegS	3.4.21.-	degS	
-	3381352	3382290	939	Malate dehydrogenase (EC 1.1.1.37)	peg	gi|49175990|ref|NC_000913.2|_3382290_3381352		malate dehydrogenase (NAD) (EC 1.1.1.37)	1.1.1.37	CDS	malate dehydrogenase, NAD-dependent	1.1.1.37	mdh	
+	3382725	3383195	471	"Arginine pathway regulatory protein ArgR, repressor of arg regulon"	peg	gi|49175990|ref|NC_000913.2|_3382725_3383195		transcriptional regulator, ArgR family		CDS	arginine repressor		argR	
+	3383560	3383823	264	probable exported protein YPO3518	peg	gi|49175990|ref|NC_000913.2|_3383560_3383823		Protein of unknown function (DUF1471).		CDS	conserved hypothetical protein			
-	3383879	3384151	273	probable ribonuclease inhibitor YPO3690	peg	gi|49175990|ref|NC_000913.2|_3384151_3383879		Barstar, RNAse (barnase) inhibitor		CDS	conserved hypothetical protein			
-	3384243	3386210	1968	FUSARIC ACID RESISTANCE PROTEIN FUSB / FUSARIC ACID RESISTANCE PROTEIN FUSC	peg	gi|49175990|ref|NC_000913.2|_3386210_3384243		Predicted membrane protein		CDS	p-hydroxybenzoic acid efflux pump subunit AaeB		aaeB	
-	3386216	3387148	933	Fusaric acid resistance protein fusE	peg	gi|49175990|ref|NC_000913.2|_3387148_3386216		RND family efflux transporter, MFP subunit		CDS	efflux transporter, RND family, MFP subunit			
-	3387156	3387428	273	probable membrane protein YPO3684	peg	gi|49175990|ref|NC_000913.2|_3387428_3387156		Protein of unknown function (DUF1656).		CDS	conserved hypothetical protein			
+	3387542	3388471	930	Putative transcriptional regulator LYSR-type	peg	gi|49175990|ref|NC_000913.2|_3387560_3388471		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	3388605	3390050	1446	"TldD protein, part of TldE/TldD proteolytic complex"	peg	gi|49175990|ref|NC_000913.2|_3390050_3388605		microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62		CDS	modulator of DNA gyrase family protein			
-	3390480	3394280	3801	FIG005080: Possible exported protein	peg	gi|49175990|ref|NC_000913.2|_3394232_3390480		TIGR02099 family protein		CDS	conserved hypothetical protein			
-	3394348	3395817	1470	Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)	peg	gi|49175990|ref|NC_000913.2|_3395817_3394348		RNAse G (EC 3.1.4.-)	3.1.26.-	CDS	ribonuclease G	3.1.26.-	rng	
-	3395807	3396400	594	Septum formation protein Maf	peg	gi|49175990|ref|NC_000913.2|_3396400_3395807		MAF protein		CDS	septum formation protein Maf		maf	
-	3396409	3396897	489	Rod shape-determining protein MreD	peg	gi|49175990|ref|NC_000913.2|_3396897_3396409		rod shape-determining protein MreD		CDS	rod shape-determining protein MreD		mreD	
-	3396897	3398000	1104	Rod shape-determining protein MreC	peg	gi|49175990|ref|NC_000913.2|_3398000_3396897		rod shape-determining protein MreC		CDS	rod shape-determining protein MreC		mreC	
-	3398066	3399109	1044	Rod shape-determining protein MreB	peg	gi|49175990|ref|NC_000913.2|_3399109_3398066		rod shape-determining protein MreB		CDS	rod shape-determining protein mreB		mreB	
-	3399414	3401354	1941	Putative lipoprotein	peg	gi|49175990|ref|NC_000913.2|_3401354_3399414		diguanylate cyclase/phosphodiesterase		CDS	RNase E specificity factor CsrD		csrD	
+	3401506	3402480	975	"YhdH, a putative quinone oxidoreductase"	peg	gi|49175990|ref|NC_000913.2|_3401506_3402480		putative quinone oxidoreductase, YhdH/YhfP family		CDS	putative quinone oxidoreductase YhdH			
+	3402517	3402681	165	FIG00639877: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3402517_3402681					conserved hypothetical protein			
+	3403458	3403928	471	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	peg	gi|49175990|ref|NC_000913.2|_3403458_3403928		biotin carboxyl carrier protein		CDS	acetyl-CoA carboxylase, biotin carboxyl carrier protein		accB	
+	3403939	3405288	1350	Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14)	peg	gi|49175990|ref|NC_000913.2|_3403939_3405288		acetyl-CoA carboxylase, biotin carboxylase subunit	6.4.1.2, 6.3.4.14	CDS	acetyl-CoA carboxylase, biotin carboxylase subunit	6.3.4.14	accC	
+	3405397	3405639	243	FIG003021: Membrane protein	peg	gi|49175990|ref|NC_000913.2|_3405397_3405639		Predicted membrane protein		CDS	conserved hypothetical protein			
+	3405629	3407080	1452	Pantothenate:Na+ symporter (TC 2.A.21.1.1)	peg	gi|49175990|ref|NC_000913.2|_3405629_3407080		sodium/pantothenate symporter		CDS	sodium/pantothenate symporter		panF	
+	3407092	3407973	882	Ribosomal protein L11 methyltransferase (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_3407092_3407973		[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC 2.1.1.-)	2.1.1.-	CDS	ribosomal protein L11 methyltransferase	2.1.1.-	prmA	
+	3408302	3409267	966	tRNA dihydrouridine synthase B (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_3408422_3409267		tRNA-U20-dihydrouridine synthase	1.-	CDS	tRNA-dihydrouridine synthase B	1.-.-.-	dusB	
+	3409293	3409589	297	DNA-binding protein Fis	peg	gi|49175990|ref|NC_000913.2|_3409293_3409589		DNA-binding protein Fis		CDS	DNA-binding protein fis		fis	
+	3409675	3410559	885	Adenine-specific methyltransferase (EC 2.1.1.72)	peg	gi|49175990|ref|NC_000913.2|_3409675_3410559		DNA modification methylase	2.1.1.72	CDS	DNA adenine methyltransferase YhdJ	2.1.1.72	yhdJ	
+	3410643	3410822	180	Putative periplasmic protein	peg	gi|49175990|ref|NC_000913.2|_3410709_3410822		Protein of unknown function (DUF2556).		CDS	conserved hypothetical protein			
-	3410825	3411487	663	"Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family"	peg	gi|49175990|ref|NC_000913.2|_3411487_3410825		transcriptional regulator, TetR family		CDS	putative acrEF/envCD operon repressor			
+	3411886	3413043	1158	Acriflavine resistance protein E (AcrE)	peg	gi|49175990|ref|NC_000913.2|_3411886_3413043		RND family efflux transporter, MFP subunit		CDS	acriflavine resistance protein A		acrA	
-	3416016	3416306	291				hypothetical protein		CDS				
+	3413055	3416159	3105	"RND efflux system, inner membrane transporter CmeB"	peg	gi|49175990|ref|NC_000913.2|_3413055_3416159		The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	RND transporter, hydrophobe/amphiphile efflux-1 family protein			
+	3416412	3416633	222	probable lipoprotein	peg	gi|49175990|ref|NC_000913.2|_3416412_3416633		hypothetical protein		CDS	conserved hypothetical protein			
+	3417064	3417300	237	FIG00642917: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3417064_3417300		hypothetical protein		CDS	putative membrane protein			
+	3417297	3418088	792	Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_3417297_3418088		amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)		CDS	bacterial extracellular solute-binding s, 3 family protein			
+	3418156	3419337	1182	Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_3418156_3419337		amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-)		CDS	amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein			
+	3419347	3420450	1104	Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_3419347_3420450		amino acid ABC transporter membrane protein 2, PAAT family (TC 3.A.1.3.-)		CDS	inner membrane amino-acid ABC transporter permease protein yhdY		yhdY	
+	3420458	3421216	759	"ABC-type polar amino acid transport system, ATPase component"	peg	gi|49175990|ref|NC_000913.2|_3420458_3421216		amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-)	3.6.3.-	CDS	conserved hypothetical protein			
-	3421882	3424805	2924										
-	3421903	3424802	2900										
-	3425243	3426784	1542										
-	3425343	3426766	1424										
-	3427788	3428045	258	FIG034389 (not subsystem-based): hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3427961_3427788		Protein of unknown function (DUF1488).		CDS	conserved hypothetical protein			
+	3427258	3427812	555	"carbonic anhydrase, family 3"	peg	gi|49175990|ref|NC_000913.2|_3427258_3427812		Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily		CDS	protein YrdA		yrdA	
-	3428042	3428860	819	Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)	peg	gi|49175990|ref|NC_000913.2|_3428860_3428042		shikimate dehydrogenase (EC 1.1.1.25)	1.1.1.25	CDS	shikimate dehydrogenase	1.1.1.25	aroE	
-	3428865	3429437	573	TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA	peg	gi|49175990|ref|NC_000913.2|_3429437_3428865		translation factor SUA5		CDS	tRNA threonylcarbamoyladenosine biosynthesis protein RimN		rimN	
-	3429442	3429984	543				Zn-finger domain associated with topoisomerase type I		CDS				
+	3429532	3429768	237	FIG00640137: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3429532_3429768								
-	3430013	3430486	474	Protein of unknown function Smg	peg	gi|49175990|ref|NC_000913.2|_3430486_3430013		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3430458	3431582	1125	Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	peg	gi|49175990|ref|NC_000913.2|_3431582_3430458		DNA protecting protein DprA		CDS	DNA protecting protein DprA		dprA	
+	3431712	3432221	510	Peptide deformylase (EC 3.5.1.88)	peg	gi|49175990|ref|NC_000913.2|_3431712_3432221		peptide deformylase (EC 3.5.1.88)	3.5.1.88	CDS	peptide deformylase	3.5.1.88	def	
+	3432236	3433183	948	Methionyl-tRNA formyltransferase (EC 2.1.2.9)	peg	gi|49175990|ref|NC_000913.2|_3432236_3433183		methionyl-tRNA formyltransferase (EC 2.1.2.9)	2.1.2.9	CDS	methionyl-tRNA formyltransferase	2.1.2.9	fmt	
+	3433229	3434518	1290	16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967	peg	gi|49175990|ref|NC_000913.2|_3433229_3434518		16S rRNA m(5)C-967 methyltransferase (EC 2.1.1.176)	2.1.1.176	CDS	ribosomal RNA small subunit methyltransferase B	2.1.1.-	sun	
+	3434540	3435916	1377	Trk system potassium uptake protein TrkA	peg	gi|49175990|ref|NC_000913.2|_3434540_3435916		K+ transport systems, NAD-binding component		CDS	trk system potassium uptake protein trkA		trkA	
-	3436453	3436671	219				Uncharacterized protein conserved in bacteria		CDS				
+	3436046	3436456	411	Large-conductance mechanosensitive channel	peg	gi|49175990|ref|NC_000913.2|_3436046_3436456		large conductance mechanosensitive channel protein		CDS	large conductance mechanosensitive channel protein		mscL	
-	3436727	3437152	426	HTH-type transcriptional regulator zntR	peg	gi|49175990|ref|NC_000913.2|_3437152_3436727		Zn(II)-responsive transcriptional regulator		CDS	zn(II)-responsive transcriptional regulator		zntR	
-	3437163	3437531	369	FIG004614: Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_3437531_3437163		Domain of unknown function (DUF1992).		CDS	conserved hypothetical protein			
-	3437638	3438021	384	LSU ribosomal protein L17p	peg	gi|49175990|ref|NC_000913.2|_3438021_3437638		LSU ribosomal protein L17P		CDS	ribosomal protein L17		rplQ	
-	3438062	3439051	990	DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6)	peg	gi|49175990|ref|NC_000913.2|_3439051_3438062		DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase, alpha subunit	2.7.7.6	rpoA	
-	3439077	3439697	621	SSU ribosomal protein S4p (S9e)	peg	gi|49175990|ref|NC_000913.2|_3439685_3439077		SSU ribosomal protein S4P		CDS	ribosomal protein S4		rpsD	
-	3439731	3440120	390	SSU ribosomal protein S11p (S14e)	peg	gi|49175990|ref|NC_000913.2|_3440120_3439731		SSU ribosomal protein S11P		CDS	30S ribosomal protein S11		rpsK	
-	3440137	3440493	357	SSU ribosomal protein S13p (S18e)	peg	gi|49175990|ref|NC_000913.2|_3440493_3440137		SSU ribosomal protein S13P		CDS	30S ribosomal protein S13		rpsM	
-	3440788	3442119	1332	Preprotein translocase secY subunit (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_3442119_3440788		protein translocase subunit secY/sec61 alpha		CDS	preprotein translocase, SecY subunit		secY	
-	3442127	3442561	435	LSU ribosomal protein L15p (L27Ae)	peg	gi|49175990|ref|NC_000913.2|_3442561_3442127		LSU ribosomal protein L15P		CDS	ribosomal protein L15		rplO	
-	3442565	3442744	180	LSU ribosomal protein L30p (L7e)	peg	gi|49175990|ref|NC_000913.2|_3442744_3442565		LSU ribosomal protein L30P		CDS	ribosomal protein L30		rpmD	
-	3442748	3443251	504	SSU ribosomal protein S5p (S2e)	peg	gi|49175990|ref|NC_000913.2|_3443251_3442748		SSU ribosomal protein S5P		CDS	ribosomal protein S5		rpsE	
-	3443266	3443619	354	LSU ribosomal protein L18p (L5e)	peg	gi|49175990|ref|NC_000913.2|_3443619_3443266		LSU ribosomal protein L18P		CDS	ribosomal protein L18		rplR	
-	3443629	3444162	534	LSU ribosomal protein L6p (L9e)	peg	gi|49175990|ref|NC_000913.2|_3444162_3443629		LSU ribosomal protein L6P		CDS	ribosomal protein L6		rplF	
-	3444175	3444567	393	SSU ribosomal protein S8p (S15Ae)	peg	gi|49175990|ref|NC_000913.2|_3444567_3444175		Ribosomal protein S8		CDS	30S ribosomal protein S8		rpsH	
-	3444601	3444906	306	"SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent"	peg	gi|49175990|ref|NC_000913.2|_3444906_3444601		SSU ribosomal protein S14P		CDS	ribosomal S14p/S29e family protein			
-	3444921	3445460	540	LSU ribosomal protein L5p (L11e)	peg	gi|49175990|ref|NC_000913.2|_3445460_3444921		LSU ribosomal protein L5P		CDS	50S ribosomal protein L5		rplE	
-	3445475	3445789	315	LSU ribosomal protein L24p (L26e)	peg	gi|49175990|ref|NC_000913.2|_3445789_3445475		LSU ribosomal protein L24P		CDS	ribosomal protein L24		rplX	
-	3445800	3446171	372	LSU ribosomal protein L14p (L23e)	peg	gi|49175990|ref|NC_000913.2|_3446153_3445800		LSU ribosomal protein L14P		CDS	ribosomal protein L14		rplN	
-	3446336	3446590	255	SSU ribosomal protein S17p (S11e)	peg	gi|49175990|ref|NC_000913.2|_3446590_3446336		SSU ribosomal protein S17P		CDS	30S ribosomal protein S17		rpsQ	
-	3446590	3446781	192	LSU ribosomal protein L29p (L35e)	peg	gi|49175990|ref|NC_000913.2|_3446781_3446590		LSU ribosomal protein L29P		CDS	ribosomal protein L29		rpmC	
-	3446781	3447191	411	LSU ribosomal protein L16p (L10e)	peg	gi|49175990|ref|NC_000913.2|_3447191_3446781		LSU ribosomal protein L16P		CDS	ribosomal protein L16		rplP	
-	3447204	3447905	702	SSU ribosomal protein S3p (S3e)	peg	gi|49175990|ref|NC_000913.2|_3447905_3447204		SSU ribosomal protein S3P		CDS	ribosomal protein S3		rpsC	
-	3447923	3448255	333	LSU ribosomal protein L22p (L17e)	peg	gi|49175990|ref|NC_000913.2|_3448255_3447923		LSU ribosomal protein L22P		CDS	ribosomal protein L22		rplV	
-	3448270	3448548	279	SSU ribosomal protein S19p (S15e)	peg	gi|49175990|ref|NC_000913.2|_3448419_3448270		SSU ribosomal protein S19P		CDS	30S ribosomal protein S19		rpsS	
-	3448565	3449386	822	LSU ribosomal protein L2p (L8e)	peg	gi|49175990|ref|NC_000913.2|_3449386_3448565		LSU ribosomal protein L2P		CDS	ribosomal protein L2		rplB	
-	3449404	3449706	303	LSU ribosomal protein L23p (L23Ae)	peg	gi|49175990|ref|NC_000913.2|_3449706_3449404		LSU ribosomal protein L23P		CDS	50S ribosomal protein L23		rplW	
-	3449703	3450308	606	LSU ribosomal protein L4p (L1e)	peg	gi|49175990|ref|NC_000913.2|_3450308_3449703		LSU ribosomal protein L4P		CDS	50S ribosomal protein L4		rplD	
-	3450319	3450948	630	LSU ribosomal protein L3p (L3e)	peg	gi|49175990|ref|NC_000913.2|_3450948_3450319		LSU ribosomal protein L3P		CDS	50S ribosomal protein L3		rplC	
-	3450981	3451292	312	SSU ribosomal protein S10p (S20e)	peg	gi|49175990|ref|NC_000913.2|_3451292_3450981		SSU ribosomal protein S10P		CDS	ribosomal protein S10		rpsJ	
-	3451530	3451949	420	PioO protein	peg	gi|49175990|ref|NC_000913.2|_3451949_3451530		type II secretion system protein B		CDS	protein pioO		pioO	
-	3451951	3453420	1470	General secretion pathway protein A	peg	gi|49175990|ref|NC_000913.2|_3453420_3451951		type II secretion system protein A		CDS	putative general secretion pathway protein A			
+	3453600	3454415	816	General secretion pathway protein C	peg	gi|49175990|ref|NC_000913.2|_3453600_3454415		type II secretion system protein C (GspC)		CDS	type II secretion system protein C		gspC	
+	3454387	3456351	1965	General secretion pathway protein D	peg	gi|49175990|ref|NC_000913.2|_3454387_3456351		type II secretion system protein D (GspD)		CDS	type II secretion system protein D		gspD	
+	3456361	3457842	1482	General secretion pathway protein E	peg	gi|49175990|ref|NC_000913.2|_3456361_3457842		general secretory pathway protein E		CDS	type II secretion system protein E		gspE	
+	3457839	3459035	1197	General secretion pathway protein F	peg	gi|49175990|ref|NC_000913.2|_3457839_3459035		type II secretion system protein F (GspF)		CDS	type II secretion system protein F		gspF	
+	3459045	3459482	438	General secretion pathway protein G	peg	gi|49175990|ref|NC_000913.2|_3459045_3459482		type II secretion system protein G (GspG)		CDS	type II secretion system protein G		gspG	
+	3459490	3459999	510	General secretion pathway protein H	peg	gi|49175990|ref|NC_000913.2|_3459490_3459999		type II secretion system protein H (GspH)		CDS	type II secretion system protein H		gspH	
+	3459996	3460373	378	General secretion pathway protein I	peg	gi|49175990|ref|NC_000913.2|_3459996_3460373		type II secretion system protein I (GspI)		CDS	type II secretion system protein I		gspI	
+	3460366	3460953	588	General secretion pathway protein J	peg	gi|49175990|ref|NC_000913.2|_3460366_3460953		type II secretion system protein J (GspJ)		CDS	prepilin-type N-terminal cleavage/methylation domain protein			
+	3460946	3461929	984	General secretion pathway protein K	peg	gi|49175990|ref|NC_000913.2|_3460946_3461929		type II secretion system protein K (GspK)		CDS	type II secretion system (T2SS), K family protein			
+	3461944	3463107	1164	General secretion pathway protein L	peg	gi|49175990|ref|NC_000913.2|_3461944_3463107		type II secretion system protein L (GspL)		CDS	type II secretion system protein L		gspL	
+	3463104	3463565	462	General secretion pathway protein M	peg	gi|49175990|ref|NC_000913.2|_3463104_3463565		type II secretion system protein M (GspM)		CDS	type II secretion system (T2SS), M family protein			
+	3463565	3464242	678	Leader peptidase HopD	peg	gi|49175990|ref|NC_000913.2|_3463565_3464242		type 4 prepilin peptidase 1 (EC:3.4.23.43). Aspartic peptidase. MEROPS family A24A	3.4.23.43, 2.1.1.-	CDS	type 4 prepilin-like proteins leader peptide-processing enzyme	2.1.1.-	hofD	
-	3464271	3464747	477	Bacterioferritin	peg	gi|49175990|ref|NC_000913.2|_3464747_3464271		bacterioferritin		CDS	bacterioferritin		bfr	
-	3464819	3465013	195	Bacterioferritin-associated ferredoxin	peg	gi|49175990|ref|NC_000913.2|_3465013_3464819		Bacterioferritin-associated ferredoxin		CDS	bacterioferritin-associated ferredoxin		bfd	
-	3465182	3467875	2694	Chitinase (EC 3.2.1.14)	peg	gi|49175990|ref|NC_000913.2|_3467875_3465182		Carbohydrate binding domain.	3.2.1.14, 3.2.1.17	CDS	putative bifunctional chitinase/lysozyme			
-	3468167	3469351	1185	Translation elongation factor Tu	peg	gi|49175990|ref|NC_000913.2|_3469351_3468167		translation elongation factor TU		CDS	translation elongation factor Tu		tuf	
-	3469422	3471536	2115	Translation elongation factor G	peg	gi|49175990|ref|NC_000913.2|_3471536_3469422		translation elongation factor 2 (EF-2/EF-G)		CDS	translation elongation factor G		fusA	
-	3471564	3472103	540	SSU ribosomal protein S7p (S5e)	peg	gi|49175990|ref|NC_000913.2|_3472103_3471564		SSU ribosomal protein S7P		CDS	ribosomal protein S7		rpsG	
-	3472200	3472574	375	SSU ribosomal protein S12p (S23e)	peg	gi|49175990|ref|NC_000913.2|_3472574_3472200		SSU ribosomal protein S12P		CDS	ribosomal protein S12		rpsL	
-	3472700	3472987	288	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	peg	gi|49175990|ref|NC_000913.2|_3472987_3472700		sulfur relay protein TusB/DsrH		CDS	sulfur relay protein TusB/DsrH	2.8.-.-	dsrH	
-	3472995	3473354	360	tRNA 5-methylaminomethyl-2-thiouridine synthase TusC	peg	gi|49175990|ref|NC_000913.2|_3473354_3472995		sulfur relay protein TusC/DsrF		CDS	sulfur relay protein TusC/DsrF		tusC	
-	3473354	3473740	387	tRNA 5-methylaminomethyl-2-thiouridine synthase TusD	peg	gi|49175990|ref|NC_000913.2|_3473740_3473354		sulfur relay protein TusD/DsrE	2.8.1.-	CDS	sulfurtransferase TusD	2.8.1.-	tusD	
-	3473740	3474462	723	YheO-like PAS domain	peg	gi|49175990|ref|NC_000913.2|_3474462_3473740		Uncharacterized protein conserved in bacteria		CDS	sensory box protein			
-	3474629	3475441	813	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_3475441_3474629		FKBP-type peptidyl-prolyl cis-trans isomerases 1	5.2.1.8	CDS	FKBP-type peptidyl-prolyl cis-trans isomerase fkpA	5.2.1.8	fkpA	
+	3475662	3475880	219	Protein slyX	peg	gi|49175990|ref|NC_000913.2|_3475677_3475880		Uncharacterized protein conserved in bacteria		CDS	slyX family protein			
-	3475929	3476519	591	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_3476519_3475929		FKBP-type peptidyl prolyl cis-trans isomerase/Apo-metallochaperone SlyD	5.2.1.8	CDS	FKBP-type peptidyl-prolyl cis-trans isomerase slyD	5.2.1.8	slyD	
-	3476614	3476814	201	"Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux"	peg	gi|49175990|ref|NC_000913.2|_3476814_3476614		conserved hypothetical metal-binding protein		CDS	conserved hypothetical protein			
-	3476824	3478629	1806	Glutathione-regulated potassium-efflux system protein KefB	peg	gi|49175990|ref|NC_000913.2|_3478629_3476824		Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1)		CDS	glutathione-regulated potassium-efflux system protein kefB		kefB	
-	3478629	3479180	552	Glutathione-regulated potassium-efflux system ancillary protein KefG	peg	gi|49175990|ref|NC_000913.2|_3479180_3478629		Kef-type potassium/proton antiporter accessory protein, CPA2 family (TC 2.A.37.1)		CDS	flavodoxin-like fold family protein			
+	3479311	3481224	1914	Glutathione-regulated potassium-efflux system ATP-binding protein	peg	gi|49175990|ref|NC_000913.2|_3479311_3481224		ATPase components of ABC transporters with duplicated ATPase domains		CDS	conserved hypothetical protein			
+	3481224	3482246	1023	"Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase"	peg	gi|49175990|ref|NC_000913.2|_3481224_3482246		Predicted hydrolase of the alpha/beta-hydrolase fold		CDS	alpha/beta hydrolase fold family protein			
+	3482240	3482458	219	FIG01199774: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3482240_3482458		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	3482512	3483381	870	"Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown"	peg	gi|49175990|ref|NC_000913.2|_3482512_3483381		Phosphoribulokinase	2.7.1.19	CDS	phosphoribulokinase / Uridine kinase family protein			
-	3483436	3483840	405	OsmC/Ohr family protein	peg	gi|49175990|ref|NC_000913.2|_3483840_3483436		Predicted redox protein, regulator of disulfide bond formation		CDS	protein yhfA		yhfA	
+	3484142	3484774	633	Cyclic AMP receptor protein	peg	gi|49175990|ref|NC_000913.2|_3484142_3484774		cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	bacterial regulatory s, crp family protein			
+	3484825	3486915	2091	FIG00638035: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3484825_3486915		integral membrane protein, YccS/YhfK family		CDS	integral membrane , YccS/YhfK family protein			
-	3486982	3488202	1221	"Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17)"	peg	gi|49175990|ref|NC_000913.2|_3488202_3486982		acetylornithine and succinylornithine transaminases/succinylornithine transaminase family	2.6.1.11, 2.6.1.17	CDS	acetylornithine/succinyldiaminopimelate aminotransferase	2.6.1.17	argD	
-	3488288	3488851	564	"Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # PabAb"	peg	gi|49175990|ref|NC_000913.2|_3488851_3488288		aminodeoxychorismate synthase, glutamine amidotransferase subunit (EC 2.6.1.85)		CDS	para-aminobenzoate synthase glutamine amidotransferase component II	2.6.1.85	pabA	
-	3488883	3489485	603	Cell filamentation protein fic	peg	gi|49175990|ref|NC_000913.2|_3489485_3488883		Protein involved in cell division		CDS	putative adenosine monophosphate-protein transferase fic			
-	3489475	3489642	168	FIG01045643: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3489642_3489475		Protein of unknown function (DUF2559).		CDS	conserved hypothetical protein			
-	3489747	3490319	573	Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_3490319_3489747		Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	peptidyl-prolyl cis-trans isomerase A	5.2.1.8	ppiA	
+	3490590	3491771	1182	TsgA protein homolog	peg	gi|49175990|ref|NC_000913.2|_3490590_3491771		Major Facilitator Superfamily.		CDS	protein tsgA		tsgA	
+	3492033	3494576	2544	Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)	peg	gi|49175990|ref|NC_000913.2|_3492033_3494576		assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4)	1.7.1.4	CDS	nitrite reductase [NAD(P)H], large subunit	1.7.1.4	nirB	
+	3494573	3494899	327	Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)	peg	gi|49175990|ref|NC_000913.2|_3494573_3494899		assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4)	1.7.1.4	CDS	nitrite reductase [NAD(P)H] small subunit	1.7.1.4	nirD	
+	3495025	3495831	807	Nitrite transporter NirC	peg	gi|49175990|ref|NC_000913.2|_3495025_3495831		formate/nitrite transporter		CDS	putative nitrite transporter			
+	3495850	3497223	1374	Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	peg	gi|49175990|ref|NC_000913.2|_3495850_3497223		uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107)/precorrin-2 dehydrogenase (EC 1.3.1.76)	1.3.1.76, 2.1.1.107, 4.99.1.4	CDS	siroheme synthase	4.99.1.4	cysG	
+	3497470	3497637	168	putative outer membrane lipoprotein	peg	gi|49175990|ref|NC_000913.2|_3497470_3497637		Protein of unknown function (DUF4223).		CDS	conserved hypothetical protein			
+	3497932	3499269	1338	"Fructoselysine transporter FrlA, cationic amino acid permease"	peg	gi|49175990|ref|NC_000913.2|_3497932_3499269		fructoselysine transporter, APC superfamily (TC 2.A.3)		CDS	amino acid permease family protein			
+	3499290	3500312	1023	Fructoselysine 6-phosphate deglycase (EC 3.5.-.-)	peg	gi|49175990|ref|NC_000913.2|_3499290_3500312		Predicted phosphosugar isomerases		CDS	SIS domain protein			
+	3500362	3501192	831	Fructoselysine 3-epimerase	peg	gi|49175990|ref|NC_000913.2|_3500362_3501192		Sugar phosphate isomerases/epimerases		CDS	xylose isomerase-like TIM barrel family protein			
+	3501189	3501974	786	Fructoselysine kinase (EC 2.7.1.-)	peg	gi|49175990|ref|NC_000913.2|_3501189_3501974		Sugar kinases, ribokinase family	2.7.1.-	CDS	pfkB carbohydrate kinase family protein			
+	3502074	3502805	732	Transcriptional regulator of fructoselysine utilization operon FrlR	peg	gi|49175990|ref|NC_000913.2|_3502074_3502805		transcriptional regulator, GntR family		CDS	HTH-type transcriptional regulator frlR		frlR	
-	3502957	3504042	1086	Aspartate aminotransferase family	peg	gi|49175990|ref|NC_000913.2|_3504042_3502957		Aminotransferase class I and II.		CDS	aminotransferase class-V family protein			
-	3504054	3505358	1305	FIG006427: Putative transport system permease protein	peg	gi|49175990|ref|NC_000913.2|_3505358_3504054		Signal transduction histidine kinase, glucose-6-phosphate specific		CDS	conserved hypothetical protein			
-	3505370	3505723	354	FIG128630: Hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3505723_3505370		Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain		CDS	conserved hypothetical protein			
-	3505734	3506612	879	Phosphotriesterase like protein	peg	gi|49175990|ref|NC_000913.2|_3506612_3505734		Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	conserved hypothetical protein			
-	3506609	3507835	1227	Phosphopentomutase like (EC 5.4.2.7)	peg	gi|49175990|ref|NC_000913.2|_3507835_3506609		Phosphopentomutase		CDS	type I phosphodiesterase / nucleotide pyrophosphatase family protein			
-	3507835	3508998	1164	Protein containing an Alanine Racemase Domain	peg	gi|49175990|ref|NC_000913.2|_3508998_3507835		Predicted amino acid racemase		CDS	alanine racemase, N-terminal domain protein			
-	3509082	3509444	363	Protein containing PTS-regulatory domain	peg	gi|49175990|ref|NC_000913.2|_3509444_3509082		PRD domain.		CDS	PRD domain protein			
-	3509461	3510366	906	Hypothetical protein YhfZ	peg	gi|49175990|ref|NC_000913.2|_3510366_3509461		hypothetical protein		CDS	conserved hypothetical protein			
-	3510392	3510637	246	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3510637_3510392								
-	3510656	3511660	1005	Tryptophanyl-tRNA synthetase (EC 6.1.1.2)	peg	gi|49175990|ref|NC_000913.2|_3511660_3510656		tryptophanyl-tRNA synthetase (EC 6.1.1.2)	6.1.1.2	CDS	tryptophan--tRNA ligase	6.1.1.2	trpS	
-	3511653	3512411	759	Phosphoglycolate phosphatase (EC 3.1.3.18)	peg	gi|49175990|ref|NC_000913.2|_3512411_3511653		phosphoglycolate phosphatase	3.1.3.18	CDS	phosphoglycolate phosphatase, bacterial	3.1.3.18	gph	
-	3512404	3513081	678	Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	peg	gi|49175990|ref|NC_000913.2|_3513081_3512404		ribulose-5-phosphate 3-epimerase (EC 5.1.3.1)	5.1.3.1	CDS	ribulose-phosphate 3-epimerase	5.1.3.1	rpe	
-	3513099	3513935	837	Methyl-directed repair DNA adenine methylase (EC 2.1.1.72)	peg	gi|49175990|ref|NC_000913.2|_3513935_3513099		DNA adenine methylase Dam	2.1.1.72	CDS	DNA adenine methylase	2.1.1.72	dam	
-	3514042	3515328	1287	"DamX, an inner membrane protein involved in bile resistance"	peg	gi|49175990|ref|NC_000913.2|_3515328_3514042		Uncharacterized protein conserved in bacteria		CDS	protein damX		damX	
-	3515420	3516508	1089	3-dehydroquinate synthase (EC 4.2.3.4)	peg	gi|49175990|ref|NC_000913.2|_3516508_3515420		3-dehydroquinate synthase (EC 4.2.3.4)	4.2.3.4	CDS	3-dehydroquinate synthase	4.2.3.4	aroB	
-	3516565	3517086	522	Shikimate kinase I (EC 2.7.1.71)	peg	gi|49175990|ref|NC_000913.2|_3517050_3516565		shikimate kinase (EC 2.7.1.71)	2.7.1.71	CDS	shikimate kinase 1	2.7.1.71	aroK	
-	3517487	3518695	1209	Type IV pilus biogenesis protein PilQ	peg	gi|49175990|ref|NC_000913.2|_3518647_3517487		type IV pilus secretin (or competence protein) PilQ		CDS	type IV pilus secretin PilQ family protein		pilQ	
-	3518637	3519041	405	Type IV pilus biogenesis protein PilP	peg	gi|49175990|ref|NC_000913.2|_3519041_3518637		Protein of unknown function (DUF2531).		CDS	conserved hypothetical protein			
-	3519031	3519471	441	Type IV pilus biogenesis protein PilO	peg	gi|49175990|ref|NC_000913.2|_3519471_3519031		hypothetical protein		CDS	putative protein involved in utilization of DNA as a carbon source			
-	3519455	3519994	540	Type IV pilus biogenesis protein PilN	peg	gi|49175990|ref|NC_000913.2|_3519994_3519455		Tfp pilus assembly protein PilN		CDS	fimbrial assembly family protein			
-	3519994	3520773	780	Type IV pilus biogenesis protein PilM	peg	gi|49175990|ref|NC_000913.2|_3520773_3519994		hypothetical protein		CDS	conserved hypothetical protein			
+	3520893	3523445	2553	Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)	peg	gi|49175990|ref|NC_000913.2|_3520893_3523445		penicillin-binding protein, 1A family	2.4.1.-, 3.4.-	CDS	penicillin-binding protein 1A	3.4.-.-	mrcA	
-	3523611	3524171	561	ADP compounds hydrolase NudE (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_3524171_3523611		NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.-	CDS	ADP compounds hydrolase nudE	3.6.1.-	nudE	
+	3524491	3526626	2136	IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system	peg	gi|49175990|ref|NC_000913.2|_3524491_3526626		Intracellular growth attenuator protein IgaA.		CDS	conserved hypothetical protein			
+	3526691	3527359	669	FIG001957: putative hydrolase	peg	gi|49175990|ref|NC_000913.2|_3526691_3527359		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	HAD hydrolase, IA, variant 3 family protein			
+	3527370	3527771	402	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)	peg	gi|49175990|ref|NC_000913.2|_3527370_3527771		heat shock protein Hsp15		CDS	heat shock protein 15		hslR	
+	3527790	3528674	885	33 kDa chaperonin (Heat shock protein 33) (HSP33)	peg	gi|49175990|ref|NC_000913.2|_3527790_3528674		Disulfide bond chaperones of the HSP33 family		CDS	33 kDa chaperonin		hslO	
-	3528737	3530461	1725	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_3530461_3528737		Predicted membrane-associated, metal-dependent hydrolase		CDS	conserved hypothetical protein			
+	3530840	3532462	1623	Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	peg	gi|49175990|ref|NC_000913.2|_3530840_3532462		phosphoenolpyruvate carboxykinase (ATP)	4.1.1.49	CDS	phosphoenolpyruvate carboxykinase	4.1.1.49	pckA	
-	3532538	3533890	1353	Osmolarity sensory histidine kinase EnvZ	peg	gi|49175990|ref|NC_000913.2|_3533890_3532538		Signal transduction histidine kinase	2.7.13.3	CDS	osmolarity sensor protein envZ	2.7.13.3	envZ	
-	3533887	3534606	720	Two-component system response regulator OmpR	peg	gi|49175990|ref|NC_000913.2|_3534606_3533887		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory protein ompR		ompR	
+	3534834	3535310	477	Transcription elongation factor GreB	peg	gi|49175990|ref|NC_000913.2|_3534834_3535310		transcription elongation factor GreB		CDS	transcription elongation factor GreB		greB	
+	3535407	3537728	2322	Transcription accessory protein (S1 RNA-binding domain)	peg	gi|49175990|ref|NC_000913.2|_3535407_3537728		Transcriptional accessory protein		CDS	protein yhgF		yhgF	
+	3538185	3538412	228	Ferrous iron transport protein A	peg	gi|49175990|ref|NC_000913.2|_3538185_3538412		Fe2+ transport system protein A		CDS	ferrous iron transport protein A		feoA	
+	3538429	3540750	2322	Ferrous iron transport protein B	peg	gi|49175990|ref|NC_000913.2|_3538429_3540750		ferrous iron transporter FeoB		CDS	ferrous iron transport protein B		feoB	
+	3540750	3540986	237	Ferrous iron-sensisng transcriptional regulator FeoC	peg	gi|49175990|ref|NC_000913.2|_3540750_3540986		Predicted transcriptional regulators		CDS	ferrous iron transport protein C		feoC	
+	3541189	3542067	879	"Putative transposase, YhgA family protein"	peg	gi|49175990|ref|NC_000913.2|_3541189_3542067		conserved hypothetical protein (putative transposase or invertase)		CDS	conserved hypothetical family protein			
-	3542096	3542866	771	Biotin synthesis protein BioH	peg	gi|49175990|ref|NC_000913.2|_3542785_3542096		carboxylesterase BioH (pimeloyl-CoA synthesis) (EC 3.1.1.85)		CDS	pimelyl-[acyl-carrier protein] methyl ester esterase		bioH	
+	3542904	3543587	684	"Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy"	peg	gi|49175990|ref|NC_000913.2|_3542940_3543587		comF family protein		CDS	comF family protein			
+	3543646	3544221	576	NfuA Fe-S protein maturation	peg	gi|49175990|ref|NC_000913.2|_3543646_3544221		IscR-regulated protein YhgI		CDS	fe/S biogenesis protein nfuA		nfuA	
+	3544581	3545897	1317	High-affinity gluconate transporter GntT	peg	gi|49175990|ref|NC_000913.2|_3544581_3545897		gluconate permease GntT (TC 2.A.8.1.4)		CDS	high-affinity gluconate transporter		gntT	
-	3546008	3548092	2085	4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)	peg	gi|49175990|ref|NC_000913.2|_3548092_3546008		4-alpha-glucanotransferase	2.4.1.25	CDS	4-alpha-glucanotransferase	2.4.1.25	malQ	
-	3548102	3550495	2394	Maltodextrin phosphorylase (EC 2.4.1.1)	peg	gi|49175990|ref|NC_000913.2|_3550495_3548102		glycogen/starch/alpha-glucan phosphorylases	2.4.1.1	CDS	maltodextrin phosphorylase	2.4.1.1	malP	
+	3551107	3553812	2706	"Transcriptional activator of maltose regulon, MalT"	peg	gi|49175990|ref|NC_000913.2|_3551107_3553812		ATP-dependent transcriptional regulator		CDS	HTH-type transcriptional regulator malT		malT	
-	3553855	3554871	1017	RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)	peg	gi|49175990|ref|NC_000913.2|_3554871_3553855		RNA 3'-phosphate cyclase	6.5.1.4	CDS	RNA 3'-phosphate cyclase	6.5.1.4	rtcA	
-	3554875	3556101	1227	"RNA-2',3'-PO4:RNA-5'-OH ligase"	peg	gi|49175990|ref|NC_000913.2|_3556101_3554875		Uncharacterized conserved protein	6.5.1.3	CDS	RNA-splicing ligase RtcB	6.5.1.-	rtcB	
-	3557870	3558628	759	"Glycerol-3-phosphate regulon repressor, DeoR family"	peg	gi|49175990|ref|NC_000913.2|_3558628_3557870		transcriptional regulator, DeoR family		CDS	glycerol-3-phosphate regulon repressor		glpR	
+	3556290	3557888	1599	Transcriptional regulatory protein RtcR	peg	gi|49175990|ref|NC_000913.2|_3556290_3557888		Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain		CDS	sigma-54 interaction domain protein			
-	3558645	3559475	831	GlpG protein (membrane protein of glp regulon)	peg	gi|49175990|ref|NC_000913.2|_3559475_3558645		Uncharacterized membrane protein (homolog of Drosophila rhomboid)		CDS	rhomboid family protease GlpG	3.4.21.105	glpG	
-	3559520	3559846	327	Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1)	peg	gi|49175990|ref|NC_000913.2|_3559846_3559520		thiosulfate sulfurtransferase (EC 2.8.1.1)	2.8.1.1	CDS	thiosulfate sulfurtransferase glpE	2.8.1.1	glpE	
+	3560036	3561541	1506	Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_3560036_3561541		homodimeric glycerol 3-phosphate dehydrogenase (quinone) (EC 1.1.5.3)	1.1.5.3	CDS	aerobic glycerol-3-phosphate dehydrogenase	1.1.5.3	glpD	
-	3561747	3562028	282	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3561938_3561747		hypothetical protein		CDS	putative transmembrane protein			
-	3562157	3564604	2448	Glycogen phosphorylase (EC 2.4.1.1)	peg	gi|49175990|ref|NC_000913.2|_3564604_3562157		glycogen/starch/alpha-glucan phosphorylases	2.4.1.1	CDS	glycogen/starch/alpha-glucan phosphorylases family protein	2.4.1.1	glgP	
-	3564623	3566056	1434	"Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)"	peg	gi|49175990|ref|NC_000913.2|_3566056_3564623		glycogen synthase (ADP-glucose)	2.4.1.21	CDS	glycogen synthase	2.4.1.21	glgA	
-	3566056	3567351	1296	Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)	peg	gi|49175990|ref|NC_000913.2|_3567351_3566056		glucose-1-phosphate adenylyltransferase	2.7.7.27	CDS	glucose-1-phosphate adenylyltransferase	2.7.7.27	glgC	
-	3567369	3569342	1974	Glycogen debranching enzyme (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_3569342_3567369		glycogen debranching enzyme GlgX	3.2.1.-	CDS	glycogen debranching enzyme GlgX	3.2.1.-	glgX	
-	3569339	3571525	2187	"1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)"	peg	gi|49175990|ref|NC_000913.2|_3571525_3569339		alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	2.4.1.18	CDS	1,4-alpha-glucan branching enzyme	2.4.1.18	glgB	
-	3571798	3572901	1104	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	peg	gi|49175990|ref|NC_000913.2|_3572901_3571798		aspartate semialdehyde dehydrogenase (EC 1.2.1.11)	1.2.1.11	CDS	aspartate-semialdehyde dehydrogenase	1.2.1.11	asd	
+	3573094	3573687	594	Multiple antibiotic resistance protein marC	peg	gi|49175990|ref|NC_000913.2|_3573094_3573687		membrane protein, MarC family		CDS	conserved hypothetical protein			
-	3573744	3575084	1341	Low-affinity gluconate/H+ symporter GntU	peg	gi|49175990|ref|NC_000913.2|_3575084_3573744		gluconate transporter		CDS	low-affinity gluconate transporter		gntU	
-	3575088	3575615	528	Gluconokinase (EC 2.7.1.12)	peg	gi|49175990|ref|NC_000913.2|_3575576_3575088		carbohydrate kinase, thermoresistant glucokinase family	2.7.1.12	CDS	thermoresistant gluconokinase	2.7.1.12	gntK	
-	3575754	3576749	996	Gluconate utilization system Gnt-I transcriptional repressor	peg	gi|49175990|ref|NC_000913.2|_3576749_3575754		transcriptional regulator, LacI family		CDS	HTH-type transcriptional regulator gntR		gntR	
-	3576973	3577668	696	"Qercetin 2,3-dioxygenase"	peg	gi|49175990|ref|NC_000913.2|_3577668_3576973		Pirin-related protein		CDS	putative quercetin 2,3-dioxygenase yhhW			
-	3577791	3578828	1038	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_3578828_3577791		Predicted dehydrogenases and related proteins		CDS	conserved hypothetical protein			
+	3579161	3579649	489	Putative acetyltransferase	peg	gi|49175990|ref|NC_000913.2|_3579278_3579649		Acetyltransferases, including N-acetylases of ribosomal proteins	2.3.1.-	CDS	acetyltransferase family protein			
+	3579886	3581064	1179	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3579886_3581064		type VI secretion system effector, Hcp1 family		CDS	type VI secretion system effector, Hcp1 family protein			
+	3581061	3581477	417	Hypothetical protein yrhA	peg	gi|49175990|ref|NC_000913.2|_3581268_3581477		hypothetical protein		CDS	putative conserved protein			
+	3581506	3581781	276				Transposase and inactivated derivatives		CDS				
+	3581700	3582203	504	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3581700_3582203		Transposase and inactivated derivatives, IS1 family		CDS	putative transposase			
+	3582427	3582582	156				hypothetical protein		CDS				
+	3582782	3583066	285	Hypothetical protein yrhB	peg	gi|49175990|ref|NC_000913.2|_3582782_3583066		hypothetical protein		CDS	conserved hypothetical protein			
-	3583104	3584846	1743	Gamma-glutamyltranspeptidase (EC 2.3.2.2)	peg	gi|49175990|ref|NC_000913.2|_3584846_3583104		gamma-glutamyltransferase 1 (EC:2.3.2.2). Threonine peptidase. MEROPS family T03	2.3.2.2	CDS	gamma-glutamyltransferase	2.3.2.2	ggt	
-	3585393	3586136	744	Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)	peg	gi|49175990|ref|NC_000913.2|_3586136_3585393		Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	glycerophosphoryl diester phosphodiesterase	3.1.4.46	ugpQ	
+	3584966	3585406	441	FIG00638953: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3584966_3585406		Protein of unknown function (DUF2756).		CDS	conserved hypothetical protein			
-	3586133	3587203	1071	"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)"	peg	gi|49175990|ref|NC_000913.2|_3587203_3586133		glycerol 3-phosphate ABC transporter ATP-binding protein	3.6.3.20	CDS	sn-glycerol-3-phosphate import ATP-binding protein UgpC	3.6.3.20	ugpC	
-	3587205	3588050	846	"Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)"	peg	gi|49175990|ref|NC_000913.2|_3588050_3587205		glycerol 3-phosphate ABC transporter membrane protein		CDS	binding--dependent transport system inner membrane component family protein			
-	3588047	3588934	888	"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)"	peg	gi|49175990|ref|NC_000913.2|_3588934_3588047		glycerol 3-phosphate ABC transporter membrane protein		CDS	binding--dependent transport system inner membrane component family protein			
-	3589032	3590348	1317	"Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)"	peg	gi|49175990|ref|NC_000913.2|_3590348_3589032		glycerol 3-phosphate-binding protein		CDS	bacterial extracellular solute-binding family protein			
-	3590747	3591460	714	Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)	peg	gi|49175990|ref|NC_000913.2|_3591460_3590747		L-leucine ABC transporter ATP-binding protein/L-isoleucine ABC transporter ATP-binding protein/L-valine ABC transporter ATP-binding protein		CDS	high-affinity branched-chain amino acid transport ATP-binding protein LivF		livF	
-	3591462	3592229	768	Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)	peg	gi|49175990|ref|NC_000913.2|_3592229_3591462		L-leucine ABC transporter ATP-binding protein/L-isoleucine ABC transporter ATP-binding protein/L-valine ABC transporter ATP-binding protein		CDS	ABC transporter family protein			
-	3592226	3593503	1278	Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)	peg	gi|49175990|ref|NC_000913.2|_3593503_3592226		L-leucine ABC transporter membrane protein/L-isoleucine ABC transporter membrane protein/L-valine ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
-	3593500	3594426	927	High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)	peg	gi|49175990|ref|NC_000913.2|_3594426_3593500		L-leucine ABC transporter membrane protein/L-isoleucine ABC transporter membrane protein/L-valine ABC transporter membrane protein		CDS	high-affinity branched-chain amino acid transport system permease protein livH		livH	
-	3594474	3595583	1110	"High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1)"	peg	gi|49175990|ref|NC_000913.2|_3595583_3594474		L-leucine-binding protein		CDS	leucine-specific-binding protein		livK	
+	3596007	3596390	384	probable acetyltransferase YPO3809	peg	gi|49175990|ref|NC_000913.2|_3596007_3596390		Acetyltransferase (GNAT) domain.		CDS	conserved hypothetical protein			
-	3596578	3597681	1104	"Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)"	peg	gi|49175990|ref|NC_000913.2|_3597681_3596578		L-leucine-binding protein/L-isoleucine-binding protein/L-valine-binding protein		CDS	leu/Ile/Val/Thr-binding protein		livJ	
-	3597952	3598806	855	RNA polymerase sigma factor RpoH	peg	gi|49175990|ref|NC_000913.2|_3598806_3597952		RNA polymerase, sigma 32 subunit, RpoH		CDS	alternative sigma factor RpoH		rpoH	
-	3599051	3600109	1059	Cell division protein FtsX	peg	gi|49175990|ref|NC_000913.2|_3600109_3599051		cell division protein FtsX		CDS	putative protein insertion permease FtsX			
-	3600102	3600770	669	"Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)"	peg	gi|49175990|ref|NC_000913.2|_3600770_3600102		cell division ATP-binding protein FtsE		CDS	cell division ATP-binding protein FtsE		ftsE	
-	3600773	3602266	1494	Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_3602266_3600773		signal recognition particle-docking protein FtsY		CDS	signal recognition particle-docking protein FtsY		ftsY	
+	3602416	3603012	597	putative methylase YhhF( EC:2.1.1.- )	peg	gi|49175990|ref|NC_000913.2|_3602416_3603012		16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52)	2.1.1.171	CDS	RNA methyltransferase, RsmD family	2.1.1.-		
+	3603002	3603271	270	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_3603002_3603271		Predicted membrane protein		CDS	conserved hypothetical protein			
-	3603274	3603633	360	Putative receptor	peg	gi|49175990|ref|NC_000913.2|_3603633_3603274		Protein of unknown function (DUF2500).		CDS	conserved hypothetical protein			
+	3603774	3604400	627	probable enzyme yhhN	peg	gi|49175990|ref|NC_000913.2|_3603774_3604400		Predicted membrane protein		CDS	yhhN-like family protein			
+	3604474	3606672	2199	"Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)"	peg	gi|49175990|ref|NC_000913.2|_3604474_3606672		heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	3.6.3.3, 3.6.3.5	CDS	cadmium-translocating P-type ATPase	3.6.3.3	cadA	
-	3606774	3607019	246	tRNA 5-methylaminomethyl-2-thiouridine synthase TusA	peg	gi|49175990|ref|NC_000913.2|_3607019_3606774		Predicted redox protein, regulator of disulfide bond formation	2.8.1.-	CDS	sulfurtransferase TusA	2.8.1.-	tusA	
+	3607240	3607905	666	Putative preQ0 transporter	peg	gi|49175990|ref|NC_000913.2|_3607240_3607905		conserved hypothetical integral membrane protein		CDS	inner membrane protein yhhQ		yhhQ	
+	3607978	3608535	558	DcrB protein precursor	peg	gi|49175990|ref|NC_000913.2|_3607978_3608535		Domain of unknown function (DUF1795).		CDS	protein dcrB		dcrB	
-	3608539	3609789	1251	"Transporter, putative"	peg	gi|49175990|ref|NC_000913.2|_3609789_3608539		Arabinose efflux permease		CDS	conserved hypothetical protein			
+	3609888	3610937	1050	Putative PerM family permease	peg	gi|49175990|ref|NC_000913.2|_3609888_3610937		Predicted permease		CDS	conserved hypothetical protein			
+	3610992	3611579	588	4'-phosphopantetheinyl transferase (EC 2.7.8.-)	peg	gi|49175990|ref|NC_000913.2|_3610992_3611579		Phosphopantetheinyl transferase	2.7.8.-	CDS	4'-phosphopantetheinyl transferase superfamily protein			
+	3611690	3613264	1575	"Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)"	peg	gi|49175990|ref|NC_000913.2|_3611690_3613264		nickel ABC transporter, nickel/metallophore periplasmic binding protein		CDS	nickel ABC transporter, nickel/metallophore periplasmic binding protein		nikA	
+	3613264	3614208	945	Nickel transport system permease protein NikB (TC 3.A.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_3613264_3614208		nickel ABC transporter, permease subunit NikB		CDS	nickel ABC transporter, permease subunit NikB	3.6.3.24	nikB	
+	3614205	3615038	834	Nickel transport system permease protein NikC (TC 3.A.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_3614205_3615038		nickel ABC transporter, permease subunit NikC		CDS	nickel ABC transporter, permease subunit NikC	3.6.3.24	nikC	
+	3615038	3615802	765	Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_3615038_3615802		nickel import ATP-binding protein NikD	3.6.3.24	CDS	nickel import ATP-binding protein NikD		nikD	
+	3615799	3616605	807	Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)	peg	gi|49175990|ref|NC_000913.2|_3615799_3616605		nickel import ATP-binding protein NikE	3.6.3.24	CDS	nickel import ATP-binding protein NikE	3.6.3.24	nikE	
+	3616611	3617012	402	Nickel responsive regulator NikR	peg	gi|49175990|ref|NC_000913.2|_3616611_3617012		transcriptional regulator, CopG family		CDS	nickel-responsive transcriptional regulator NikR		nikR	
+	3617215	3621450	4236	core protein	peg	gi|49175990|ref|NC_000913.2|_3617215_3621450		RHS repeat-associated core domain		CDS	RHS repeat-associated core domain protein			
+	3621422	3621805	384				hypothetical protein		CDS				
+	3621910	3622155	246				hypothetical protein		CDS				
+	3622401	3623537	1137	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3622401_3623537		Transposase		CDS	H repeat-associated protein yhhI		yhhI	
-	3623702	3624826	1125	Putative transporter	peg	gi|49175990|ref|NC_000913.2|_3624826_3623702		ABC-type multidrug transport system, permease component		CDS	inner membrane transport permease yhhJ		yhhJ	
-	3624826	3627561	2736	"ABC-type multidrug transport system, permease component"	peg	gi|49175990|ref|NC_000913.2|_3627561_3624826		ABC-type multidrug transport system, ATPase component		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
-	3627558	3628625	1068	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_3628625_3627558		hemolysin A secretion protein HlyD ( 8.A.1.3.1 )		CDS	efflux transporter, RND family, MFP subunit			
-	3628991	3630613	1623	FIG00637996: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3630613_3628991		Domain of unknown function (DUF4049).		CDS	conserved hypothetical protein			
-	3630875	3631246	372				Domain of unknown function (DUF4049).		CDS				
-	3631243	3632481	1239	FIG00638558: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3632250_3631243		Domain of unknown function (DUF4049).		CDS	conserved hypothetical protein			
+	3632864	3633916	1053	FIG00638244: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3632909_3633916		Protein of unknown function (DUF2776).		CDS	inner membrane protein yhiM		yhiM	
-	3634231	3635433	1203	NAD(FAD)-utilizing dehydrogenases	peg	gi|49175990|ref|NC_000913.2|_3635433_3634231		flavoprotein, HI0933 family		CDS	flavo, HI0933 family protein			
+	3635665	3637164	1500	Low-affinity inorganic phosphate transporter	peg	gi|49175990|ref|NC_000913.2|_3635665_3637164		Phosphate/sulphate permeases		CDS	low-affinity inorganic phosphate transporter 1		pitA	
-	3637408	3637743	336	Universal stress protein B	peg	gi|49175990|ref|NC_000913.2|_3637689_3637408		Universal stress protein B (UspB).		CDS	universal stress B family protein			
+	3638134	3638568	435	Universal stress protein A	peg	gi|49175990|ref|NC_000913.2|_3638134_3638568		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress protein A		uspA	
+	3638885	3640354	1470	Di/tripeptide permease DtpB	peg	gi|49175990|ref|NC_000913.2|_3638885_3640354		amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	dipeptide and tripeptide permease B		dtpB	
-	3640403	3641155	753	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3641155_3640403		Putative SAM-dependent methyltransferase.		CDS	SAM-dependent methyltransferase family protein			
-	3641163	3643205	2043	Oligopeptidase A (EC 3.4.24.70)	peg	gi|49175990|ref|NC_000913.2|_3643205_3641163		oligopeptidase A (EC:3.4.24.70). Metallo peptidase. MEROPS family M03A	3.4.24.70	CDS	oligopeptidase A	3.4.24.70	prlC	
+	3643408	3644250	843	Protein involved in catabolism of external DNA	peg	gi|49175990|ref|NC_000913.2|_3643408_3644250		Protein involved in catabolism of external DNA		CDS	conserved hypothetical protein			
+	3644322	3645674	1353	Glutathione reductase (EC 1.8.1.7)	peg	gi|49175990|ref|NC_000913.2|_3644322_3645674		NADPH-glutathione reductase (EC 1.8.1.7)	1.8.1.7	CDS	glutathione-disulfide reductase	1.8.1.7	gor	
+	3645839	3646012	174	FIG00638311: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3645839_3646012		hypothetical protein		CDS	conserved hypothetical protein			
+	3646551	3646904	354	Arsenical resistance operon repressor	peg	gi|49175990|ref|NC_000913.2|_3646551_3646904		transcriptional regulator, ArsR family		CDS	bacterial regulatory , arsR family protein			
+	3646958	3648247	1290	Arsenic efflux pump protein	peg	gi|49175990|ref|NC_000913.2|_3646958_3648247		arsenite efflux membrane protein ArsB (TC 3.A.4.1.1; TC 2.A.45.1.1)		CDS	arsenical pump membrane protein		arsB	
+	3648260	3648685	426	Arsenate reductase (EC 1.20.4.1)	peg	gi|49175990|ref|NC_000913.2|_3648260_3648685		arsenate reductase (glutaredoxin)	1.20.4.1	CDS	arsenate reductase	1.20.4.1	arsC	
+	3649314	3650096	783	FIG00638514: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3649314_3650096		hypothetical protein		CDS	putative predicted protein			
-	3650205	3651221	1017	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3651221_3650205		Transposase and inactivated derivatives, IS5 family		CDS	transposase DDE domain protein			
+	3651239	3651736	498	FIG00641106: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3651239_3651736								
+	3651984	3652550	567	Starvation lipoprotein Slp	peg	gi|49175990|ref|NC_000913.2|_3651984_3652550		outer membrane lipoprotein, Slp family		CDS	outer membrane protein slp		slp	
+	3652706	3653236	531	"Transcriptional regulator, ArsR family"	peg	gi|49175990|ref|NC_000913.2|_3652706_3653236		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	bacterial regulatory s, luxR family protein			
-	3653278	3653925	648	"Mg(2+) transport ATPase protein C / Putative membrane transporter ATPase,YhiD"	peg	gi|49175990|ref|NC_000913.2|_3653853_3653278		Uncharacterized membrane protein		CDS	mgtC family protein			
-	3653989	3654327	339	Chaperone HdeB	peg	gi|49175990|ref|NC_000913.2|_3654327_3653989		HdeA/HdeB family.		CDS	protein hdeB		hdeB	
-	3654431	3654763	333	Chaperone HdeA	peg	gi|49175990|ref|NC_000913.2|_3654763_3654431		HdeA/HdeB family.		CDS	chaperone-like protein hdeA		hdeA	
+	3655018	3655590	573	"Membrane transporter HdeD, H-NS repressed"	peg	gi|49175990|ref|NC_000913.2|_3655018_3655590		Uncharacterized conserved protein		CDS	protein hdeD		hdeD	
+	3656389	3656916	528	Transcriptional activator GadE	peg	gi|49175990|ref|NC_000913.2|_3656389_3656916		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	transcriptional regulator gadE		gadE	
-	3656917	3657195	279				hypothetical protein		CDS				
+	3657255	3658412	1158	Multidrug resistance protein MdtE	peg	gi|49175990|ref|NC_000913.2|_3657348_3658412		RND family efflux transporter, MFP subunit		CDS	multidrug resistance protein mdtE		mdtE	
+	3658437	3661550	3114	"RND efflux system, inner membrane transporter CmeB"	peg	gi|49175990|ref|NC_000913.2|_3658437_3661550		The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family		CDS	multidrug resistance protein MdtF		mdtF	
-	3661913	3662641	729	HTH-type transcriptional regulator gadW	peg	gi|49175990|ref|NC_000913.2|_3662641_3661913		transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator gadW		gadW	
-	3663009	3663833	825	HTH-type transcriptional regulator gadX	peg	gi|49175990|ref|NC_000913.2|_3663833_3663009		transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator gadX		gadX	
-	3664203	3665603	1401	Glutamate decarboxylase (EC 4.1.1.15)	peg	gi|49175990|ref|NC_000913.2|_3665603_3664203		glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15	CDS	glutamate decarboxylase	4.1.1.15		
-	3665814	3667211	1398	Cytochrome c551 peroxidase (EC 1.11.1.5)	peg	gi|49175990|ref|NC_000913.2|_3667211_3665814		Cytochrome c peroxidase	1.11.1.5	CDS	cytochrome c family protein			
+	3667615	3669264	1650	Cytoplasmic trehalase (EC 3.2.1.28)	peg	gi|49175990|ref|NC_000913.2|_3667615_3669264		Neutral trehalase	3.2.1.28	CDS	trehalase family protein			
-	3669315	3669917	603	Putative regulator	peg	gi|49175990|ref|NC_000913.2|_3669917_3669315		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	putative HTH-type transcriptional regulator yhjB			
+	3670365	3671336	972	LysR family transcriptional regulator YhjC	peg	gi|49175990|ref|NC_000913.2|_3670365_3671336		transcriptional regulator, LysR family		CDS	conserved hypothetical protein			
+	3671385	3672398	1014	Inner membrane protein YhjD	peg	gi|49175990|ref|NC_000913.2|_3671385_3672398		ribonuclease, putative		CDS	inner membrane protein YhjD		yhjD	
+	3672809	3674131	1323	Inner membrane metabolite transport protein YhjE	peg	gi|49175990|ref|NC_000913.2|_3672809_3674131		metabolite-proton symporter		CDS	inner membrane metabolite transport protein yhjE		yhjE	
-	3674313	3676373	2061	Uncharacterized protein YhjG	peg	gi|49175990|ref|NC_000913.2|_3676373_3674313		Uncharacterized protein involved in outer membrane biogenesis		CDS	asmA family protein			
-	3676443	3677210	768	GGDEF/EAL domain protein YhjH	peg	gi|49175990|ref|NC_000913.2|_3677057_3676443		FOG: EAL domain		CDS	cyclic di-GMP phosphodiesterase YhjH	3.1.4.52	yhjH	
+	3677442	3678371	930	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	peg	gi|49175990|ref|NC_000913.2|_3677442_3678371		2-keto-3-deoxygluconate kinase (EC 2.7.1.45)	2.7.1.45	CDS	pfkB carbohydrate kinase family protein			
-	3678467	3679963	1497	"Protein YhjJ, putative peptidase"	peg	gi|49175990|ref|NC_000913.2|_3679963_3678467		Predicted Zn-dependent peptidases		CDS	protein yhjJ		yhjJ	
-	3680184	3681470	1287	"Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate"	peg	gi|49175990|ref|NC_000913.2|_3681371_3680184		Na+/H+-dicarboxylate symporters		CDS	aerobic C4-dicarboxylate transport protein		dctA	
+	3681396	3681572	177	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3681396_3681572					putative predicted protein			
-	3681653	3683641	1989	Protein yhjK	peg	gi|49175990|ref|NC_000913.2|_3683608_3681653		diguanylate cyclase/phosphodiesterase		CDS	protein YhjK		yhjK	
-	3683723	3687196	3474	Cellulose synthase operon protein C	peg	gi|49175990|ref|NC_000913.2|_3687196_3683723		Flp pilus assembly protein TadD, contains TPR repeats		CDS	cellulose synthase operon protein C		bcsC	
-	3687178	3688284	1107	Endoglucanase precursor (EC 3.2.1.4)	peg	gi|49175990|ref|NC_000913.2|_3688254_3687178		Cellulase family 8 (EC 3.2.1.4)	3.2.1.4	CDS	endoglucanase	3.2.1.4	bcsZ	
-	3688291	3690630	2340	Cyclic di-GMP binding protein precursor	peg	gi|49175990|ref|NC_000913.2|_3690630_3688291		Bacterial cellulose synthase subunit.		CDS	cyclic di-GMP-binding protein		bcsB	
-	3690641	3693259	2619	Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12)	peg	gi|49175990|ref|NC_000913.2|_3693259_3690641		cellulose synthase catalytic subunit (UDP-forming)	2.4.1.12	CDS	cellulose synthase catalytic subunit [UDP-forming]	2.4.1.12	bcsA	
-	3693256	3693984	729	"Cellulose synthase, putative"	peg	gi|49175990|ref|NC_000913.2|_3693972_3693256		cell division protein YhjQ		CDS	cellulose synthase operon protein YhjQ		yhjQ	
-	3694020	3694208	189	FIG004405: Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_3694208_3694020		Protein of unknown function (DUF2629).		CDS	conserved hypothetical protein			
+	3694493	3696052	1560	FIG005274: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3694493_3696052		cellulose biosynthesis protein BcsE		CDS	cellulose biosynthesis protein BcsE		bcsE	
+	3696049	3696240	192	FIG005119: putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_3696049_3696240		celllulose biosynthesis operon protein BcsF/YhjT		CDS	celllulose biosynthesis operon protein BcsF/YhjT		bcsF	
+	3696237	3697916	1680	FIG002337: predicted inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_3696237_3697916		cellulose synthase operon protein YhjU		CDS	conserved hypothetical protein			
-	3698003	3698170	168	corresponds to STY4175 from Accession AL513382: Salmonella typhi CT18	peg	gi|49175990|ref|NC_000913.2|_3698170_3698003		Toxin Ldr, type I toxin-antitoxin system.		CDS	toxin Ldr, type I toxin-antitoxin system family protein			
+	3698586	3699857	1272	Serine transporter	peg	gi|49175990|ref|NC_000913.2|_3698586_3699857		Amino acid permeases		CDS	inner membrane transport protein YhjV		yhjV	
-	3699887	3700891	1005	Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)	peg	gi|49175990|ref|NC_000913.2|_3700891_3699887		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			
-	3700888	3701871	984	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)	peg	gi|49175990|ref|NC_000913.2|_3701871_3700888		oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein			
-	3701882	3702784	903	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)	peg	gi|49175990|ref|NC_000913.2|_3702784_3701882		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	dipeptide transport system permease protein dppC		dppC	
-	3702794	3703813	1020	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)	peg	gi|49175990|ref|NC_000913.2|_3703813_3702794		ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	binding--dependent transport system inner membrane component family protein			
+	3703908	3704120	213	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3703908_3704120								
-	3704121	3705728	1608	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)"	peg	gi|49175990|ref|NC_000913.2|_3705671_3704121		ABC-type dipeptide transport system, periplasmic component		CDS	bacterial extracellular solute-binding s, 5 Middle family protein			
-	3706080	3706235	156	FIG00638870: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3706235_3706080					conserved hypothetical protein			
-	3706807	3708498	1692	Phosphoethanolamine transferase specific for the outer Kdo residue of lipopolysaccharide	peg	gi|49175990|ref|NC_000913.2|_3708498_3706807		Predicted membrane-associated, metal-dependent hydrolase		CDS	phosphoethanolamine transferase eptB	2.7.-.-	eptB	
-	3708822	3710030	1209	Putative resistance protein	peg	gi|49175990|ref|NC_000913.2|_3710030_3708822		Oxalate/Formate Antiporter		CDS	inner membrane protein yhjX		yhjX	
-	3710259	3710957	699	Putative lipase	peg	gi|49175990|ref|NC_000913.2|_3710957_3710259		outer membrane autotransporter barrel domain		CDS	outer membrane autotransporter barrel domain protein			
+	3711115	3711678	564	DNA-3-methyladenine glycosylase (EC 3.2.2.20)	peg	gi|49175990|ref|NC_000913.2|_3711115_3711678		DNA-3-methyladenine glycosylase I (EC 3.2.2.20)	3.2.2.20	CDS	DNA-3-methyladenine glycosylase 1	3.2.2.20	tag	
-	3712084	3714417	2334	Biotin sulfoxide reductase (EC 1.-.-.-) / Free methionine-(S)-sulfoxide reductase	peg	gi|49175990|ref|NC_000913.2|_3714363_3712084		molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.-	CDS	molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein			
+	3711675	3712115	441	Acetyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_3711675_3712115		N-acetylglutamate synthase and related acetyltransferases	2.3.1.-	CDS	acetyltransferase family protein			
+	3714570	3715229	660	Outer membrane protein A precursor	peg	gi|49175990|ref|NC_000913.2|_3714570_3715229		Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	inner membrane lipoprotein yiaD		yiaD	
+	3715333	3716307	975	"2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)"	peg	gi|49175990|ref|NC_000913.2|_3715333_3716307		Lactate dehydrogenase and related dehydrogenases	1.1.1.215	CDS	glyoxylate/hydroxypyruvate reductase B	1.1.1.215	ghrB	
-	3716357	3717067	711	probable exported protein YPO4070	peg	gi|49175990|ref|NC_000913.2|_3717067_3716357		Protein of unknown function (DUF3053).		CDS	conserved hypothetical protein			
+	3717501	3717791	291	FIG00638451: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3717501_3717791		Predicted transcriptional regulator		CDS	helix-turn-helix family protein			
+	3718072	3718284	213	Cold shock protein CspA	peg	gi|49175990|ref|NC_000913.2|_3718072_3718284		cold-shock DNA-binding protein family		CDS	cold shock protein CspA		cspA	
+	3717912	3718339	428										
-	3718471	3718623	153	putative membrane permeability altering protein	peg	gi|49175990|ref|NC_000913.2|_3718623_3718471		Hok/gef family.		CDS	protein HokA		hokA	
+	3718703	3719224	522	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3718925_3719224		Transposase and inactivated derivatives		CDS	helix-turn-helix domain protein			
+	3719221	3720072	852	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_3719221_3720072		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	3720351	3722420	2070	Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	peg	gi|49175990|ref|NC_000913.2|_3722420_3720351		glycyl-tRNA synthetase beta chain (EC 6.1.1.14)	6.1.1.14	CDS	glycyl-tRNA synthetase beta subunit	6.1.1.14	glyS	
-	3722430	3723341	912	Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	peg	gi|49175990|ref|NC_000913.2|_3723341_3722430		glycyl-tRNA synthetase alpha chain (EC 6.1.1.14)	6.1.1.14	CDS	glycyl-tRNA synthetase alpha subunit	6.1.1.14	glyQ	
-	3723436	3723735	300	Uncharacterized lipoprotein YsaB precursor	peg	gi|49175990|ref|NC_000913.2|_3723735_3723436		YsaB-like lipoprotein.		CDS	ysaB-like lipofamily protein			
+	3723910	3724905	996	Inner membrane protein YiaH	peg	gi|49175990|ref|NC_000913.2|_3723961_3724905		Uncharacterized protein conserved in bacteria		CDS	inner membrane protein YiaH		yiaH	
-	3724947	3725384	438	Inner membrane protein YiaA	peg	gi|49175990|ref|NC_000913.2|_3725384_3724947		Predicted membrane protein		CDS	inner membrane protein yiaA		yiaA	
-	3725430	3725771	342	Inner membrane protein YiaB	peg	gi|49175990|ref|NC_000913.2|_3725771_3725430		Predicted membrane protein		CDS	inner membrane protein yiaB		yiaB	
-	3725940	3727394	1455	Xylulose kinase (EC 2.7.1.17)	peg	gi|49175990|ref|NC_000913.2|_3727394_3725940		xylulokinase (EC 2.7.1.17)	2.7.1.17	CDS	xylulokinase	2.7.1.17	xylB	
-	3727466	3728788	1323	Xylose isomerase (EC 5.3.1.5)	peg	gi|49175990|ref|NC_000913.2|_3728788_3727466		D-xylose isomerase (EC 5.3.1.5)	5.3.1.5	CDS	xylose isomerase	5.3.1.5	xylA	
+	3729154	3730146	993	"Xylose ABC transporter, periplasmic xylose-binding protein XylF"	peg	gi|49175990|ref|NC_000913.2|_3729154_3730146		xylose-binding protein		CDS	D-xylose ABC transporter, D-xylose-binding protein		xylF	
+	3730224	3731765	1542	D-xylose transport ATP-binding protein XylG	peg	gi|49175990|ref|NC_000913.2|_3730224_3731765		xylose ABC transporter ATP-binding protein	3.6.3.17	CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
+	3731743	3732924	1182	"Xylose ABC transporter, permease protein XylH"	peg	gi|49175990|ref|NC_000913.2|_3731743_3732924		xylose ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
+	3733002	3734180	1179	Xylose activator XylR (AraC family)	peg	gi|49175990|ref|NC_000913.2|_3733002_3734180		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	3734376	3735200	825	BAX protein	peg	gi|49175990|ref|NC_000913.2|_3734948_3734376		Uncharacterized FlgJ-related protein		CDS	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein			
+	3735520	3737550	2031	Periplasmic alpha-amylase (EC 3.2.1.1)	peg	gi|49175990|ref|NC_000913.2|_3735520_3737550		Glycosidases	3.2.1.1	CDS	alpha-amylase	3.2.1.1	malS	
+	3737728	3738981	1254	Valine--pyruvate aminotransferase (EC 2.6.1.66)	peg	gi|49175990|ref|NC_000913.2|_3737728_3738981		valine-pyruvate aminotransferase apoenzyme (EC 2.6.1.66)	2.6.1.66	CDS	aminotransferase class I and II family protein			
-	3739132	3739605	474	Putative electron transport protein YsaA	peg	gi|49175990|ref|NC_000913.2|_3739605_3739132		Fe-S-cluster-containing hydrogenase components 2		CDS	electron transport protein hydN		hydN	
-	3739707	3740555	849	"Transcriptional regulator, IclR family"	peg	gi|49175990|ref|NC_000913.2|_3740555_3739707		transcriptional regulator, IclR family		CDS	HTH-type transcriptional regulator yiaJ		yiaJ	
+	3740756	3741754	999	3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)	peg	gi|49175990|ref|NC_000913.2|_3740756_3741754		2,3-diketo-L-gulonate reductase (EC 1.1.1.130)	1.1.1.130	CDS	2,3-diketo-L-gulonate reductase	1.1.1.130	dlgD	
+	3741766	3742233	468	Putative sugar isomerase involved in processing of exogenous sialic acid	peg	gi|49175990|ref|NC_000913.2|_3741766_3742233		uncharacterized protein, YhcH/YjgK/YiaL family		CDS	conserved hypothetical protein			
+	3742351	3742824	474	"2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM"	peg	gi|49175990|ref|NC_000913.2|_3742351_3742824		TRAP-type C4-dicarboxylate transport system, small permease component		CDS	2,3-diketo-L-gulonate TRAP transporter small permease protein yiaM		yiaM	
+	3742827	3744104	1278	"2,3-diketo-L-gulonate TRAP transporter large permease protein yiaN"	peg	gi|49175990|ref|NC_000913.2|_3742827_3744104		TRAP transporter, DctM subunit		CDS	TRAP transporter, DctM subunit			
+	3744117	3745103	987	"2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor"	peg	gi|49175990|ref|NC_000913.2|_3744117_3745103		tripartite ATP-independent periplasmic transporter solute receptor, DctP family		CDS	2,3-diketo-L-gulonate-binding periplasmic protein yiaO		yiaO	
+	3745107	3746603	1497	L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)	peg	gi|49175990|ref|NC_000913.2|_3745107_3746603		3-keto-L-gulonate kinase (EC 2.7.1.-)/L-xylulose kinase (EC 2.7.1.53)	2.7.1.53	CDS	L-xylulose/3-keto-L-gulonate kinase	2.7.1.53	lyx	
+	3746600	3747262	663	3-keto-L-gulonate 6-phosphate decarboxylase homolog	peg	gi|49175990|ref|NC_000913.2|_3746600_3747262		3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	4.1.1.85	CDS	3-keto-L-gulonate-6-phosphate decarboxylase sgbH	4.1.1.85	sgbH	
+	3747255	3748115	861	L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.-) homolog	peg	gi|49175990|ref|NC_000913.2|_3747255_3748115		L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.22)	5.-	CDS	xylose isomerase-like TIM barrel family protein			
+	3748109	3748804	696	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	peg	gi|49175990|ref|NC_000913.2|_3748109_3748804		L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4	CDS	L-ribulose-5-phosphate 4-epimerase	5.1.3.4	araD	
-	3749151	3749891	741	Putative outer membrane protein yiaT precursor	peg	gi|49175990|ref|NC_000913.2|_3749891_3749151		Outer membrane protein V		CDS	mltA-interacting MipA family protein			
-	3750986	3752122	1137	Multidrug resistance protein A	peg	gi|49175990|ref|NC_000913.2|_3752122_3750986		Multidrug resistance efflux pump		CDS	inner membrane protein yiaV		yiaV	
+	3750015	3750989	975	LysR family transcriptional regulator YiaU	peg	gi|49175990|ref|NC_000913.2|_3750015_3750989		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
-	3752128	3752451	324	GTPase (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_3752451_3752128		Protein of unknown function (DUF3302).		CDS	inner membrane protein yiaW		yiaW	
+	3752565	3752777	213	FIG00638635: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3752622_3752777		hypothetical protein		CDS	conserved hypothetical protein			
-	3752996	3754534	1539	Aldehyde dehydrogenase B (EC 1.2.1.22)	peg	gi|49175990|ref|NC_000913.2|_3754534_3752996		NAD-dependent aldehyde dehydrogenases	1.2.1.-	CDS	aldehyde dehydrogenase B	1.2.1.-	aldB	
-	3754699	3755850	1152	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|49175990|ref|NC_000913.2|_3755850_3754699		Alcohol dehydrogenase, class IV	1.1.1.1	CDS	iron-containing alcohol dehydrogenase family protein			
-	3756040	3757884	1845	Selenocysteine-specific translation elongation factor	peg	gi|49175990|ref|NC_000913.2|_3757884_3756040		selenocysteine-specific translation elongation factor SelB		CDS	selenocysteine-specific translation elongation factor		selB	
-	3757881	3759272	1392	L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)	peg	gi|49175990|ref|NC_000913.2|_3759272_3757881		L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)	2.9.1.1	CDS	L-seryl-tRNA selenium transferase	2.9.1.1	selA	
-	3759370	3759978	609	Uncharacterized GST-like protein yibF	peg	gi|49175990|ref|NC_000913.2|_3759978_3759370		Glutathione S-transferase		CDS	glutathione S-transferase, C-terminal domain protein			
+	3760206	3764339	4134	core protein	peg	gi|49175990|ref|NC_000913.2|_3760206_3764339		RHS repeat-associated core domain		CDS	RHS repeat-associated core domain protein			
+	3764360	3765202	843	"orf, hypothetical protein"	peg	gi|49175990|ref|NC_000913.2|_3764360_3765202		FOG: HEAT repeat		CDS	protein yibA		yibA	
+	3765244	3765945	702	core protein	peg	gi|49175990|ref|NC_000913.2|_3765244_3765945		RHS repeat-associated core domain		CDS	RHS repeat-associated core domain protein			
+	3766200	3766661	462				hypothetical protein		CDS				
-	3768266	3769402	1137	Multidrug resistance protein A	peg	gi|49175990|ref|NC_000913.2|_3769402_3768266		Multidrug resistance efflux pump		CDS	inner membrane protein yibH		yibH	
-	3769405	3769767	363	GTPase (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_3769767_3769405		Protein of unknown function (DUF3302).		CDS	inner membrane protein yiaW		yiaW	
+	3770304	3772217	1914	"PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3770304_3772217		PTS system D-mannitol-specific IIA component, Fru family (TC 4.A.2.1.2)/PTS system D-mannitol-specific IIB component, Fru family (TC 4.A.2.1.2)/PTS system D-mannitol-specific IIC component, Fru family (TC 4.A.2.1.2)		CDS	PTS system mannitol-specific EIICBA component	2.7.1.-	mtlA	
+	3772447	3773595	1149	Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)	peg	gi|49175990|ref|NC_000913.2|_3772447_3773595		D-mannitol 1-phosphate 5-dehydrogenase (EC 1.1.1.17)	1.1.1.17	CDS	mannitol-1-phosphate 5-dehydrogenase	1.1.1.17	mtlD	
+	3773595	3774182	588	Mannitol operon repressor	peg	gi|49175990|ref|NC_000913.2|_3773595_3774182		mannitol repressor, MtlR		CDS	mannitol operon repressor		mtlR	
-	3774194	3774403	210	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_3774403_3774194		hypothetical protein		CDS	conserved hypothetical protein			
+	3774688	3775050	363	FIG01045660: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3774688_3775050		NAD/FAD-utilizing enzyme apparently involved in cell division		CDS	conserved hypothetical protein			
+	3775422	3777077	1656	L-lactate permease	peg	gi|49175990|ref|NC_000913.2|_3775422_3777077		L-lactate transport		CDS	L-lactate permease		lldP	
+	3777077	3777853	777	"Lactate-responsive regulator LldR in Enterobacteria, GntR family"	peg	gi|49175990|ref|NC_000913.2|_3777077_3777853		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	3777850	3779040	1191	L-lactate dehydrogenase (EC 1.1.2.3)	peg	gi|49175990|ref|NC_000913.2|_3777850_3779040		L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases	1.1.2.3	CDS	L-lactate dehydrogenase [cytochrome]	1.1.2.3	lldD	
+	3779238	3779711	474	tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) ## TrmL	peg	gi|49175990|ref|NC_000913.2|_3779238_3779711		rRNA methylase, putative, group 2	2.1.1.207	CDS	tRNA (cytidine(34)-2'-O)-methyltransferase	2.1.1.207	trmL	
-	3779764	3780585	822	Serine acetyltransferase (EC 2.3.1.30)	peg	gi|49175990|ref|NC_000913.2|_3780585_3779764		serine O-acetyltransferase (EC 2.3.1.30)	2.3.1.30	CDS	serine O-acetyltransferase	2.3.1.30	cysE	
-	3780665	3781684	1020	Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)	peg	gi|49175990|ref|NC_000913.2|_3781684_3780665		glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC 1.1.1.94)	1.1.1.94	CDS	NAD-dependent glycerol-3-phosphate dehydrogenase family protein			
-	3781684	3782151	468	"Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state)"	peg	gi|49175990|ref|NC_000913.2|_3782151_3781684		protein translocase subunit secB		CDS	protein-export chaperone SecB		secB	
-	3782214	3782465	252	Glutaredoxin 3 (Grx3)	peg	gi|49175990|ref|NC_000913.2|_3782465_3782214		Glutaredoxin, GrxC family		CDS	glutaredoxin 3		grxC	
-	3782607	3783038	432	FIG136845: Rhodanese-related sulfurtransferase	peg	gi|49175990|ref|NC_000913.2|_3783038_3782607		Rhodanese-related sulfurtransferase		CDS	rhodanese-like domain protein			
+	3783283	3784827	1545	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)"	peg	gi|49175990|ref|NC_000913.2|_3783283_3784827		phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	5.4.2.1	gpmI	
+	3784861	3786120	1260	Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP	peg	gi|49175990|ref|NC_000913.2|_3784939_3786120		Membrane-bound metallopeptidase		CDS	murein hydrolase activator EnvC		envC	
-	3787070	3788104	1035	"Beta-1,3-galactosyltransferase / Beta-1,4-galactosyltransferase"	peg	gi|49175990|ref|NC_000913.2|_3788104_3787070		Glycosyltransferases involved in cell wall biogenesis		CDS	glycosyl transferase 2 family protein			
+	3786124	3787083	960	"Putative periplasmic protein YibQ, distant homology with nucleoside diphosphatase and polysaccharide deacetylase"	peg	gi|49175990|ref|NC_000913.2|_3786124_3787083		Uncharacterized protein conserved in bacteria		CDS	divergent polysaccharide deacetylase family protein			
-	3788343	3789368	1026	L-threonine 3-dehydrogenase (EC 1.1.1.103)	peg	gi|49175990|ref|NC_000913.2|_3789368_3788343		L-threonine 3-dehydrogenase (EC 1.1.1.103)	1.1.1.103	CDS	L-threonine 3-dehydrogenase	1.1.1.103	tdh	
-	3789378	3790574	1197	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	peg	gi|49175990|ref|NC_000913.2|_3790574_3789378		2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	2.3.1.29	CDS	2-amino-3-ketobutyrate coenzyme A ligase	2.3.1.29	kbl	
-	3790849	3791721	873	Involved in lipopolysaccharide biosynthesis	peg	gi|49175990|ref|NC_000913.2|_3791706_3790849		conserved hypothetical protein HtrL		CDS	conserved hypothetical protein			
+	3792010	3792942	933	ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)	peg	gi|49175990|ref|NC_000913.2|_3792010_3792942		ADP-glyceromanno-heptose 6-epimerase precursor (EC 5.1.3.20)	5.1.3.20	CDS	ADP-glyceromanno-heptose 6-epimerase	5.1.3.20	rfaD	
+	3792952	3793998	1047	ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-)	peg	gi|49175990|ref|NC_000913.2|_3792952_3793998		lipopolysaccharide heptosyltransferase II	2.4.-	CDS	lipopolysaccharide heptosyltransferase II	2.4.-.-	rfaF	
+	3794002	3794961	960	Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-)	peg	gi|49175990|ref|NC_000913.2|_3794002_3794961		lipopolysaccharide heptosyltransferase I	2.4.-	CDS	lipopolysaccharide heptosyltransferase I	2.4.-.-	rfaC	
+	3794971	3796230	1260	O-antigen ligase	peg	gi|49175990|ref|NC_000913.2|_3794971_3796230		Lipid A core - O-antigen ligase and related enzymes	6.-	CDS	O-antigen ligase		rfaL	
-	3796262	3797335	1074	"Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56)"	peg	gi|49175990|ref|NC_000913.2|_3797335_3796262		ADP-heptose:LPS heptosyltransferase	2.4.-	CDS	glycosyltransferase 9 family protein			
-	3797368	3798219	852	Lipopolysaccharide core biosynthesis protein RfaZ	peg	gi|49175990|ref|NC_000913.2|_3798219_3797368		hypothetical protein	2.-	CDS	conserved hypothetical protein			
-	3798290	3798988	699	Lipopolysaccharide core biosynthesis protein RfaY	peg	gi|49175990|ref|NC_000913.2|_3798988_3798290		Predicted unusual protein kinase	2.7.1.-	CDS	lipopolysaccharide core heptose(II) kinase rfaY	2.7.1.-	rfaY	
-	3799006	3800022	1017	"lipopolysaccharide 1,2-glucosyltransferase( EC:2.4.1.58 )"	peg	gi|49175990|ref|NC_000913.2|_3800022_3799006		Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases	2.4.1.-	CDS	lipopolysaccharide 1,2-glucosyltransferase	2.4.1.58	rfaJ	
-	3800062	3801081	1020	"UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-)"	peg	gi|49175990|ref|NC_000913.2|_3801081_3800062		Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases	2.4.1.-	CDS	glycosyl transferase 8 C-terminal family protein			
-	3801081	3802160	1080	"Lipopolysaccharide 1,6-galactosyltransferase (EC 2.4.1.-)"	peg	gi|49175990|ref|NC_000913.2|_3802160_3801081		Glycosyltransferase	2.4.1.-	CDS	lipopolysaccharide 1,6-galactosyltransferase	2.4.1.-	rfaB	
-	3802204	3803139	936	Lipopolysaccharide core biosynthesis protein RfaS	peg	gi|49175990|ref|NC_000913.2|_3803139_3802204		hypothetical protein	2.4.1.-	CDS	lipopolysaccharide core biosynthesis protein rfaS		rfaS	
-	3803176	3803973	798	"Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase"	peg	gi|49175990|ref|NC_000913.2|_3803973_3803176		Lipopolysaccharide kinase (Kdo/WaaP) family.	2.7.1.-	CDS	lipopolysaccharide core heptose(I) kinase rfaP	2.7.1.-	rfaP	
-	3803966	3805090	1125	"UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-)"	peg	gi|49175990|ref|NC_000913.2|_3805090_3803966		Glycosyltransferase	2.4.1.-	CDS	lipopolysaccharide core biosynthesis protein rfaG	2.4.-.-	rfaG	
-	3805087	3806157	1071	Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-)	peg	gi|49175990|ref|NC_000913.2|_3806103_3805087		lipopolysaccharide heptosyltransferase III, putative	2.4.-	CDS	putative lipopolysaccharide heptosyltransferase III			
+	3806563	3807840	1278	3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_3806629_3807840		3-deoxy-D-manno-octulosonic-acid transferase	2.4.99.13, 2.4.99.12, 2.4.99.15, 2.4.99.14	CDS	glycosyl transferases group 1 family protein			
+	3807848	3808327	480	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	peg	gi|49175990|ref|NC_000913.2|_3807848_3808327		Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	2.7.7.3	CDS	pantetheine-phosphate adenylyltransferase	2.7.7.3	coaD	
-	3808366	3809175	810	Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)	peg	gi|49175990|ref|NC_000913.2|_3809175_3808366		formamidopyrimidine-DNA glycosylase (fpg)	4.2.99.18, 3.2.2.23	CDS	formamidopyrimidine-DNA glycosylase	3.2.2.23	mutM	
-	3809273	3809440	168	"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent"	peg	gi|49175990|ref|NC_000913.2|_3809440_3809273		LSU ribosomal protein L33P		CDS	ribosomal protein L33		rpmG	
-	3809461	3809697	237	LSU ribosomal protein L28p	peg	gi|49175990|ref|NC_000913.2|_3809661_3809461		LSU ribosomal protein L28P		CDS	ribosomal protein L28		rpmB	
-	3809914	3810582	669	DNA repair protein RadC	peg	gi|49175990|ref|NC_000913.2|_3810582_3809914		DNA replication and repair protein RadC		CDS	DNA repair RadC family protein			
+	3810754	3811974	1221	Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5)	peg	gi|49175990|ref|NC_000913.2|_3810754_3811974		Phosphopantothenate-cysteine ligase (EC 6.3.2.5)/Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)	4.1.1.36, 6.3.2.5	CDS	phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase	4.1.1.36	coaBC	
+	3811952	3812410	459	Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	peg	gi|49175990|ref|NC_000913.2|_3811952_3812410		deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)	3.6.1.23	CDS	deoxyuridine 5'-triphosphate nucleotidohydrolase	3.6.1.23	dut	
+	3812517	3813113	597	"Transcriptional regulator SlmA, TetR family"	peg	gi|49175990|ref|NC_000913.2|_3812517_3813113		transcriptional regulator, TetR family/cell division inhibitor SlmA		CDS	HTH-type protein slmA		slmA	
-	3813150	3813791	642	Orotate phosphoribosyltransferase (EC 2.4.2.10)	peg	gi|49175990|ref|NC_000913.2|_3813791_3813150		orotate phosphoribosyltransferase (EC 2.4.2.10)	2.4.2.10	CDS	orotate phosphoribosyltransferase	2.4.2.10	pyrE	
-	3813886	3814572	687	Ribonuclease PH (EC 2.7.7.56)	peg	gi|49175990|ref|NC_000913.2|_3814572_3813886		RNAse PH (EC 2.7.7.56)	2.7.7.56	CDS	ribonuclease PH	2.7.7.56	rph	
+	3814699	3815562	864	Protein YicC	peg	gi|49175990|ref|NC_000913.2|_3814699_3815562		TIGR00255 family protein		CDS	conserved hypothetical protein			
+	3815783	3816607	825	DNA-damage-inducible protein D	peg	gi|49175990|ref|NC_000913.2|_3815783_3816607		hypothetical protein		CDS	putative dNA-damage-inducible protein D			
-	3817511	3819193	1683	"DNA ligase (EC 6.5.1.2), LigB"	peg	gi|49175990|ref|NC_000913.2|_3819193_3817511		NAD-dependent DNA ligase (contains BRCT domain type II)	6.5.1.2	CDS	DNA ligase B	6.5.1.2	ligB	
+	3816897	3817514	618	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_3816897_3817514		Predicted membrane protein		CDS	conserved hypothetical protein			
+	3819451	3820074	624	Guanylate kinase (EC 2.7.4.8)	peg	gi|49175990|ref|NC_000913.2|_3819451_3820074		guanylate kinase (EC 2.7.4.8)	2.7.4.8	CDS	guanylate kinase	2.7.4.8	gmk	
+	3820129	3820404	276	DNA-directed RNA polymerase omega subunit (EC 2.7.7.6)	peg	gi|49175990|ref|NC_000913.2|_3820129_3820404		DNA-directed RNA polymerase subunit omega (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase, omega subunit	2.7.7.6	rpoZ	
+	3820423	3822531	2109	"GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)"	peg	gi|49175990|ref|NC_000913.2|_3820423_3822531		(p)ppGpp synthetase, RelA/SpoT family	3.1.7.2	CDS	bifunctional (p)ppGpp synthase/hydrolase SpoT	3.1.7.2	spoT	
+	3822538	3823227	690	tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34)	peg	gi|49175990|ref|NC_000913.2|_3822538_3823227		rRNA methylases	2.1.1.34	CDS	tRNA guanosine-2'-O-methyltransferase	2.1.1.34	trmH	
+	3823233	3825314	2082	ATP-dependent DNA helicase RecG (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_3823233_3825314		ATP-dependent DNA helicase RecG (EC 3.6.1.-)	3.6.4.12	CDS	ATP-dependent DNA helicase RecG	3.6.4.12	recG	
-	3825483	3826688	1206	Sodium/glutamate symport protein	peg	gi|49175990|ref|NC_000913.2|_3826688_3825483		sodium--glutamate symport carrier (gltS)		CDS	sodium/glutamate symporter		gltS	
+	3826968	3828359	1392	Xanthine permease	peg	gi|49175990|ref|NC_000913.2|_3826968_3828359		uracil-xanthine permease		CDS	uracil-xanthine permease family protein			
+	3828480	3830189	1710	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_3828480_3830189		AsmA family.		CDS	conserved hypothetical protein			
-	3830242	3832560	2319	Alpha-xylosidase (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_3832560_3830242		Alpha-glucosidases, family 31 of glycosyl hydrolases		CDS	alpha-xylosidase	3.2.1.-	yicI	
-	3832570	3833952	1383	Xyloside transporter XynT	peg	gi|49175990|ref|NC_000913.2|_3833952_3832570		sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	inner membrane symporter yicJ		yicJ	
+	3834976	3836160	1185	Sugar efflux transporter B	peg	gi|49175990|ref|NC_000913.2|_3834976_3836160		sugar efflux transporter		CDS	sugar efflux transporter C		setC	
+	3836271	3837194	924	FIG00638098: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3836271_3837194		Carboxylate/Amino Acid/Amine Transporter		CDS	conserved hypothetical protein			
-	3837198	3838016	819	Methionine ABC transporter substrate-binding protein	peg	gi|49175990|ref|NC_000913.2|_3838016_3837198		lipoprotein, YaeC family		CDS	lipoprotein 28		nlpA	
+	3838238	3838531	294	probable secreted protein STY4010	peg	gi|49175990|ref|NC_000913.2|_3838238_3838531		hypothetical protein		CDS	conserved hypothetical protein			
-	3838572	3839927	1356	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_3839927_3838572		Arabinose efflux permease		CDS	purine ribonucleoside efflux pump nepI		nepI	
-	3839973	3840425	453	probable membrane protein YPO2654	peg	gi|49175990|ref|NC_000913.2|_3840425_3839973		Protein of unknown function (DUF1198).		CDS	conserved hypothetical protein			
-	3840478	3841890	1413	Xanthine/uracil/thiamine/ascorbate permease family protein	peg	gi|49175990|ref|NC_000913.2|_3841890_3840478		Permeases		CDS	putative permease yicO			
+	3841987	3843753	1767	Adenine deaminase (EC 3.5.4.2)	peg	gi|49175990|ref|NC_000913.2|_3841987_3843753		Adenine deaminase (EC 3.5.4.2)	3.5.4.2	CDS	adenine deaminase	3.5.4.2	ade	
-	3843799	3845190	1392	Hexose phosphate transport protein UhpT	peg	gi|49175990|ref|NC_000913.2|_3845190_3843799		phosphoglycerate transporter family protein		CDS	hexose phosphate transport protein		uhpT	
-	3845328	3846647	1320	Hexose phosphate uptake regulatory protein UhpC	peg	gi|49175990|ref|NC_000913.2|_3846647_3845328		phosphoglycerate transporter family protein		CDS	regulatory protein uhpC		uhpC	
-	3846657	3848159	1503	"Sensor histidine protein kinase UhpB, glucose-6-phosphate specific (EC 2.7.13.3)"	peg	gi|49175990|ref|NC_000913.2|_3848159_3846657		Signal transduction histidine kinase, glucose-6-phosphate specific		CDS	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			
-	3848159	3848749	591	Transcriptional regulatory protein UhpA	peg	gi|49175990|ref|NC_000913.2|_3848749_3848159		two component transcriptional regulator, LuxR family		CDS	transcriptional regulatory protein uhpA		uhpA	
-	3848825	3849115	291	Acetolactate synthase small subunit (EC 2.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_3849115_3848825		acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	acetolactate synthase isozyme 1 small subunit	2.2.1.6	ilvN	
-	3849119	3850807	1689	Acetolactate synthase large subunit (EC 2.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_3850807_3849119		acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6	CDS	acetolactate synthase, large subunit, biosynthetic type	2.2.1.6	ilvB	
+	3851945	3853129	1185	Multidrug resistance protein D	peg	gi|49175990|ref|NC_000913.2|_3851945_3853129		Multidrug resistance protein		CDS	multidrug resistance protein D		emrD	
-	3853137	3853634	498	Putative transcriptional regulator	peg	gi|49175990|ref|NC_000913.2|_3853634_3853137		hypothetical protein		CDS	putative dNA-binding transcriptional regulator			
-	3853631	3853993	363	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_3853993_3853631		Domain of unknown function (DUF202).		CDS	inner membrane protein yidG		yidG	
-	3853983	3854330	348	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_3854330_3853983		Predicted membrane protein		CDS	conserved hypothetical protein			
+	3854438	3854887	450	FIG00638952: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3854438_3854887		hypothetical protein		CDS	inner membrane protein yidI		yidI	
-	3854934	3856427	1494	Choline-sulfatase (EC 3.1.6.6)	peg	gi|49175990|ref|NC_000913.2|_3856427_3854934		Arylsulfatase A and related enzymes		CDS	sulfatase family protein			
-	3856424	3858139	1716	Sodium-Choline Symporter	peg	gi|49175990|ref|NC_000913.2|_3858139_3856424		transporter, SSS family		CDS	conserved hypothetical protein			
-	3859196	3859408	213	Maltose-6'-phosphate glucosidase (EC 3.2.1.122)	peg	gi|49175990|ref|NC_000913.2|_3859372_3859196		Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases		CDS	family 4 glycosyl hydrolase C-terminal domain protein			
+	3858306	3859199	894	Hypothetical transcriptional regulator yidL	peg	gi|49175990|ref|NC_000913.2|_3858306_3859199		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
-	3859372	3860010	639	Maltose-6'-phosphate glucosidase (EC 3.2.1.122)	peg	gi|49175990|ref|NC_000913.2|_3860010_3859372		Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases	3.2.1.122	CDS	6-phospho-alpha-glucosidase	3.2.1.122	aglB	
-	3860010	3860495	486	"PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3860495_3860010		PTS system, glucose-like IIB component		CDS	PTS system, glucose-like IIB component domain protein	2.7.1.69		
-	3860520	3861626	1107	"PTS system, maltose and glucose-specific IIC component (EC 2.7.1.69) / PTS system, maltose and glucose-specific IIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3861626_3860520		PTS system glucose/alpha-glucoside-specific IIB component, Glc family (TC 4.A.1.1.10)/PTS system glucose/alpha-glucoside-specific IIC component, Glc family (TC 4.A.1.1.10)		CDS	PTS system, alpha-glucoside-specific IIBC component domain protein	2.7.1.69		
-	3862635	3864296	1662	Mediator of hyperadherence YidE	peg	gi|49175990|ref|NC_000913.2|_3864296_3862635		Predicted permease		CDS	aspT/YidE/YbjL antiporter duplication domain protein			
+	3861922	3862638	717	HTH-type transcriptional regulator YidP	peg	gi|49175990|ref|NC_000913.2|_3861922_3862638		transcriptional regulator, GntR family		CDS	conserved hypothetical protein			
-	3864492	3864920	429	16 kDa heat shock protein B	peg	gi|49175990|ref|NC_000913.2|_3864920_3864492		Molecular chaperone (small heat shock protein)		CDS	small heat shock protein ibpB		ibpB	
-	3865032	3865445	414	16 kDa heat shock protein A	peg	gi|49175990|ref|NC_000913.2|_3865445_3865032		Molecular chaperone (small heat shock protein)		CDS	small heat shock protein ibpA		ibpA	
+	3865823	3866083	261	Outer membrane lipoprotein YidQ	peg	gi|49175990|ref|NC_000913.2|_3865823_3866083		Predicted periplasmic lipoprotein		CDS	conserved hypothetical protein			
-	3866085	3867299	1215	Uncharacterized protein YidR	peg	gi|49175990|ref|NC_000913.2|_3867299_3866085		Periplasmic component of the Tol biopolymer transport system		CDS	conserved hypothetical protein			
-	3868461	3869753	1293	D-galactonate transporter	peg	gi|49175990|ref|NC_000913.2|_3869753_3868461		phosphoglycerate transporter family protein/D-galactonate transporter		CDS	D-galactonate transporter		dgoT	
+	3867400	3868464	1065	Uncharacterized protein YidS	peg	gi|49175990|ref|NC_000913.2|_3867400_3868464		Dehydrogenases (flavoproteins)		CDS	FAD binding domain protein			
-	3869873	3871021	1149	Galactonate dehydratase (EC 4.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_3871021_3869873		L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily	4.2.1.6	CDS	D-galactonate dehydratase	4.2.1.6	dgoD	
-	3871018	3871635	618	2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)	peg	gi|49175990|ref|NC_000913.2|_3871635_3871018		2-keto-3-deoxy-phosphogalactonate aldolase (EC 4.1.2.21)	4.1.2.21	CDS	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	4.1.2.21	dgoA	
-	3871619	3872497	879	2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	peg	gi|49175990|ref|NC_000913.2|_3872497_3871619		2-keto-3-deoxy-galactonokinase	2.7.1.58	CDS	2-oxo-3-deoxygalactonate kinase		dgoK	
-	3872494	3873183	690	D-Galactonate repressor DgoR	peg	gi|49175990|ref|NC_000913.2|_3873183_3872494		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	3873461	3874117	657	Putative replicase	peg	gi|49175990|ref|NC_000913.2|_3873461_3874117		hypothetical protein		CDS	conserved hypothetical protein			
-	3874163	3874975	813	Phosphatase YidA	peg	gi|49175990|ref|NC_000913.2|_3874975_3874163		HAD-superfamily hydrolase, subfamily IIB		CDS	phosphatase YidA	3.1.3.-	yidA	
-	3875090	3875488	399	FIG00638813: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3875488_3875090		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3875728	3878142	2415	DNA gyrase subunit B (EC 5.99.1.3)	peg	gi|49175990|ref|NC_000913.2|_3878142_3875728		DNA gyrase subunit B (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase, B subunit	5.99.1.3	gyrB	
-	3878171	3879244	1074	DNA recombination and repair protein RecF	peg	gi|49175990|ref|NC_000913.2|_3879244_3878171		DNA replication and repair protein RecF		CDS	DNA replication and repair protein recF		recF	
-	3879244	3880344	1101	DNA polymerase III beta subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_3880344_3879244		DNA polymerase III, beta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, beta subunit	2.7.7.7	dnaN	
-	3880349	3881752	1404	Chromosomal replication initiator protein DnaA	peg	gi|49175990|ref|NC_000913.2|_3881752_3880349		chromosomal replication initiator protein DnaA		CDS	chromosomal replication initiator protein DnaA		dnaA	
+	3882549	3882875	327	Ribonuclease P protein component (EC 3.1.26.5)	peg	gi|49175990|ref|NC_000913.2|_3882549_3882875		ribonuclease P protein component (EC 3.1.26.5)	3.1.26.5	CDS	ribonuclease P protein component	3.1.26.5	rnpA	
+	3883099	3884745	1647	"Inner membrane protein translocase component YidC, long form"	peg	gi|49175990|ref|NC_000913.2|_3883150_3884745		protein translocase subunit yidC		CDS	inner membrane protein oxaA		oxaA	
+	3884851	3886215	1365	GTPase and tRNA-U34 5-formylation enzyme TrmE	peg	gi|49175990|ref|NC_000913.2|_3884851_3886215		tRNA modification GTPase trmE	3.6.-	CDS	tRNA modification GTPase TrmE	3.6.-.-	trmE	
+	3886753	3888168	1416	Tryptophanase (EC 4.1.99.1)	peg	gi|49175990|ref|NC_000913.2|_3886753_3888168		tryptophanase (EC 4.1.99.1)	4.1.99.1	CDS	tryptophanase	4.1.99.1	tnaA	
+	3888259	3889506	1248	Tryptophan-specific transport protein	peg	gi|49175990|ref|NC_000913.2|_3888337_3889506		aromatic amino acid transport protein		CDS	low affinity tryptophan permease		tnaB	
+	3889638	3890813	1176	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_3889638_3890813		Arabinose efflux permease		CDS	multidrug resistance protein mdtL		mdtL	
+	3890788	3891747	960	Putative LysR-family transcriptional regulator YidZ	peg	gi|49175990|ref|NC_000913.2|_3890788_3891747		Transcriptional regulator		CDS	HTH-type transcriptional regulator yidZ		yidZ	
+	3891904	3892653	750	FIG004212: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3892057_3892653		Phosphopantetheinyl transferase		CDS	putative phosphopantetheinyl transferase			
+	3892675	3893241	567	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_3892675_3893241		Predicted flavoprotein		CDS	NADPH-dependent FMN reductase family protein			
-	3893295	3894632	1338	Xanthine/uracil/thiamine/ascorbate permease family protein	peg	gi|49175990|ref|NC_000913.2|_3894632_3893295		Permeases		CDS	putative adenine permease PurP			
+	3894797	3895462	666	Putative phosphatase YieH	peg	gi|49175990|ref|NC_000913.2|_3894797_3895462		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	HAD hydrolase, IA, variant 1 family protein			
+	3895529	3895996	468	FIG00638032: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3895706_3895996		hypothetical protein		CDS	inner membrane protein CbrB		cbrB	
+	3896045	3896632	588	FIG00638764: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3896045_3896632		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3896694	3897416	723	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3897416_3896694		6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase		CDS	glucosamine-6-phosphate isomerases/6-phosphogluconolactonase family protein			
-	3897431	3898600	1170	"Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8)"	peg	gi|49175990|ref|NC_000913.2|_3898600_3897431		Enterochelin esterase and related enzymes		CDS	conserved hypothetical protein			
-	3898627	3900243	1617	"Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)"	peg	gi|49175990|ref|NC_000913.2|_3900243_3898627		Maltoporin (phage lambda and maltose receptor)		CDS	cryptic outer membrane porin BglH		bglH	
-	3900312	3901724	1413	6-phospho-beta-glucosidase (EC 3.2.1.86)	peg	gi|49175990|ref|NC_000913.2|_3901724_3900312		Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	3.2.1.86	CDS	cellulase family protein			
-	3901743	3903620	1878	"PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69) / PTS system, beta-glucoside-specific IIC component (EC 2.7.1.69) / PTS system, beta-glucoside-specific IIA component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_3903620_3901743		PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.2)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.2)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.2)		CDS	PTS system beta-glucoside-specific EIIBCA component	2.7.1.-	bglF	
-	3903754	3904590	837	"Beta-glucoside bgl operon antiterminator, BglG family"	peg	gi|49175990|ref|NC_000913.2|_3904590_3903754		transcriptional antiterminator, BglG family		CDS	cryptic beta-glucoside bgl operon antiterminator		bglG	
-	3904876	3905601	726	Phosphate transport system regulatory protein PhoU	peg	gi|49175990|ref|NC_000913.2|_3905601_3904876		phosphate uptake regulator, PhoU		CDS	phosphate transport system regulatory protein PhoU		phoU	
-	3905616	3906389	774	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	peg	gi|49175990|ref|NC_000913.2|_3906389_3905616		phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1)	3.6.3.27	CDS	phosphate ABC transporter, ATP-binding protein	3.6.3.27	pstB	
-	3906572	3907462	891	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)	peg	gi|49175990|ref|NC_000913.2|_3907462_3906572		phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, permease protein PstA		pstA	
-	3907462	3908421	960	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)	peg	gi|49175990|ref|NC_000913.2|_3908421_3907462		phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, permease protein PstC		pstC	
-	3908508	3909548	1041	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"	peg	gi|49175990|ref|NC_000913.2|_3909548_3908508		phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	phosphate ABC transporter, phosphate-binding protein PstS		pstS	
-	3909862	3911691	1830	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)	peg	gi|49175990|ref|NC_000913.2|_3911691_3909862		glutamine--fructose-6-phosphate transaminase	2.6.1.16	CDS	glutamine-fructose-6-phosphate transaminase	2.6.1.16	glmS	
-	3911853	3913223	1371	N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	peg	gi|49175990|ref|NC_000913.2|_3913223_3911853		UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)/glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)	2.3.1.157, 2.7.7.23	CDS	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	2.7.7.23	glmU	
-	3913576	3913995	420	ATP synthase epsilon chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3913995_3913576		ATP synthase F1 subcomplex epsilon subunit	3.6.3.14	CDS	ATP synthase F1, epsilon subunit	3.6.3.14	atpC	
-	3914016	3915398	1383	ATP synthase beta chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3915398_3914016		ATP synthase F1 subcomplex beta subunit	3.6.3.14	CDS	ATP synthase F1, beta subunit	3.6.3.14	atpD	
-	3915425	3916288	864	ATP synthase gamma chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3916288_3915425		ATP synthase, F1 gamma subunit	3.6.3.14	CDS	ATP synthase F1, gamma subunit	3.6.3.14	atpG	
-	3916339	3917880	1542	ATP synthase alpha chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3917880_3916339		proton translocating ATP synthase, F1 alpha subunit	3.6.3.14	CDS	ATP synthase F1, alpha subunit	3.6.3.14	atpA	
-	3917893	3918426	534	ATP synthase delta chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3918426_3917893		ATP synthase F1 subcomplex delta subunit	3.6.3.14	CDS	ATP synthase F1, delta subunit	3.6.3.14	atpH	
-	3918441	3918911	471	ATP synthase B chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3918911_3918441		ATP synthase F0 subcomplex B subunit	3.6.3.14	CDS	ATP synthase F0, B subunit	3.6.3.14	atpF	
-	3918973	3919212	240	ATP synthase C chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3919212_3918973		ATP synthase, F0 subunit c	3.6.3.14	CDS	ATP synthase F0, C subunit	3.6.3.14	atpE	
-	3919259	3920074	816	ATP synthase A chain (EC 3.6.3.14)	peg	gi|49175990|ref|NC_000913.2|_3920074_3919259		ATP synthase F0 subcomplex A subunit	3.6.3.14	CDS	ATP synthase F0, A subunit	3.6.3.14	atpB	
-	3920083	3920463	381	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3920301_3920083		F0F1-type ATP synthase, subunit I		CDS	putative membrane protein			
-	3921080	3921703	624	rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB	peg	gi|49175990|ref|NC_000913.2|_3921703_3921080		16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170)	2.1.1.170	CDS	16S rRNA (guanine(527)-N(7))-methyltransferase GidB	2.1.1.170	gidB	
-	3921767	3923656	1890	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	peg	gi|49175990|ref|NC_000913.2|_3923656_3921767		glucose-inhibited division protein A		CDS	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA		gidA	
-	3924035	3924478	444	Flavoprotein MioC	peg	gi|49175990|ref|NC_000913.2|_3924478_3924035		Flavodoxins		CDS	protein mioC		mioC	
-	3924568	3925026	459	Regulatory protein AsnC	peg	gi|49175990|ref|NC_000913.2|_3925026_3924568		transcriptional regulator, AsnC family		CDS	regulatory protein AsnC		asnC	
+	3925178	3926170	993	Aspartate--ammonia ligase (EC 6.3.1.1)	peg	gi|49175990|ref|NC_000913.2|_3925178_3926170		aspartate-ammonia ligase (EC 6.3.1.1)	6.3.1.1	CDS	aspartate--ammonia ligase	6.3.1.1	asnA	
-	3926175	3927626	1452	FIG00637882: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3927626_3926175		Uncharacterized protein containing a von Willebrand factor type A (vWA) domain		CDS	VWA domain containing CoxE-like family protein			
-	3927620	3929116	1497	Putative regulator protein	peg	gi|49175990|ref|NC_000913.2|_3929116_3927620		MoxR-like ATPases	3.6.3.-	CDS	ATPase ravA	3.6.3.-	ravA	
+	3929339	3931207	1869	Kup system potassium uptake protein	peg	gi|49175990|ref|NC_000913.2|_3929339_3931207		potassium uptake protein		CDS	potassium uptake protein		kup	
+	3931338	3931793	456	"Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)"	peg	gi|49175990|ref|NC_000913.2|_3931338_3931793		ribose transport protein RbsD	5.-	CDS	rbsD / FucU transport family protein			
+	3931801	3933306	1506	"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)"	peg	gi|49175990|ref|NC_000913.2|_3931801_3933306		ribose ABC transporter ATP-binding protein	3.6.3.17	CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
+	3933311	3934276	966	"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)"	peg	gi|49175990|ref|NC_000913.2|_3933311_3934276		ribose ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
+	3934301	3935191	891	"Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)"	peg	gi|49175990|ref|NC_000913.2|_3934301_3935191		ribose-binding protein		CDS	D-ribose-binding periplasmic protein		rbsB	
+	3935302	3936246	945	Ribokinase (EC 2.7.1.15)	peg	gi|49175990|ref|NC_000913.2|_3935302_3936246		ribokinase	2.7.1.15	CDS	ribokinase	2.7.1.15	rbsK	
-	3937208	3938635	1428	Permeases of the major facilitator superfamily	peg	gi|49175990|ref|NC_000913.2|_3938635_3937208		drug resistance transporter, EmrB/QacA subfamily		CDS	putative transport protein hsrA			
+	3936250	3937242	993	Ribose operon repressor	peg	gi|49175990|ref|NC_000913.2|_3936259_3937242		transcriptional regulator, LacI family		CDS	ribose operon repressor		rbsR	
-	3938658	3939350	693	"Transcriptional regulator, GntR family"	peg	gi|49175990|ref|NC_000913.2|_3939350_3938658		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	3939849	3941272	1424										
+	3939831	3941372	1542										
+	3941730	3944629	2900										
+	3941727	3944650	2924										
-	3945151	3945990	840	HTH-type transcriptional regulator hdfR	peg	gi|49175990|ref|NC_000913.2|_3945990_3945151		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	3946109	3946447	339	Protein yifE	peg	gi|49175990|ref|NC_000913.2|_3946109_3946447		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	3946472	3947992	1521	MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein	peg	gi|49175990|ref|NC_000913.2|_3947992_3946472		Mg chelatase-related protein		CDS	sigma-54 interaction domain protein			
+	3948583	3949566	984	Acetolactate synthase large subunit (EC 2.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_3948583_3949566		Thiamine pyrophosphate enzyme, N-terminal TPP binding domain./Thiamine pyrophosphate enzyme, central domain.	2.2.1.6	CDS	thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein			
+	3949691	3950227	537	Acetolactate synthase large subunit (EC 2.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_3949718_3950227		Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.		CDS	thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			
+	3950224	3950487	264	Acetolactate synthase small subunit (EC 2.2.1.6)	peg	gi|49175990|ref|NC_000913.2|_3950224_3950487		acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	acetolactate synthase isozyme 2 small subunit	2.2.1.6	ilvM	
+	3950507	3951436	930	Branched-chain amino acid aminotransferase (EC 2.6.1.42)	peg	gi|49175990|ref|NC_000913.2|_3950507_3951436		branched chain amino acid aminotransferase apoenzyme (EC 2.6.1.42)	2.6.1.42	CDS	branched-chain amino acid aminotransferase	2.6.1.42	ilvE	
+	3951501	3953351	1851	Dihydroxy-acid dehydratase (EC 4.2.1.9)	peg	gi|49175990|ref|NC_000913.2|_3951501_3953351		dihydroxy-acid dehydratase	4.2.1.9	CDS	dihydroxy-acid dehydratase	4.2.1.9	ilvD	
+	3953354	3954898	1545	Threonine dehydratase biosynthetic (EC 4.3.1.19)	peg	gi|49175990|ref|NC_000913.2|_3953354_3954898		threonine ammonia-lyase, biosynthetic, long form	4.3.1.19	CDS	threonine ammonia-lyase, biosynthetic	4.3.1.19	ilvA	
-	3954950	3955843	894	HTH-type transcriptional regulator IlvY	peg	gi|49175990|ref|NC_000913.2|_3955843_3954950		Transcriptional regulator		CDS	bacterial regulatory helix-turn-helix , lysR family protein			
+	3955993	3957468	1476	Ketol-acid reductoisomerase (EC 1.1.1.86)	peg	gi|49175990|ref|NC_000913.2|_3955993_3957468		ketol-acid reductoisomerase (EC 1.1.1.86)	1.1.1.86	CDS	ketol-acid reductoisomerase	1.1.1.86	ilvC	
-	3957555	3957836	282	Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_3957836_3957555		Parvulin-like peptidyl-prolyl isomerase	5.2.1.8	CDS	peptidyl-prolyl cis-trans isomerase C	5.2.1.8	ppiC	
-	3958265	3958483	219				hypothetical protein		CDS				
+	3958700	3960721	2022	ATP-dependent DNA helicase Rep	peg	gi|49175990|ref|NC_000913.2|_3958700_3960721		ATP-dependent DNA helicase Rep (EC 3.6.1.-)	3.6.4.12	CDS	ATP-dependent DNA helicase Rep	3.6.4.12	rep	
-	3960768	3962252	1485	"Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (EC 3.6.1.40) @ Exopolyphosphatase (EC 3.6.1.11)"	peg	gi|49175990|ref|NC_000913.2|_3962252_3960768		Exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	ppx/GppA phosphatase family protein			
-	3962388	3963653	1266	ATP-dependent RNA helicase RhlB	peg	gi|49175990|ref|NC_000913.2|_3963653_3962388		Superfamily II DNA and RNA helicases	3.6.4.13	CDS	ATP-dependent RNA helicase rhlB	3.6.4.13	rhlB	
+	3963784	3964113	330	Thioredoxin	peg	gi|49175990|ref|NC_000913.2|_3963784_3964113		thioredoxin		CDS	thioredoxin		trxA	
+	3964440	3965699	1260	Transcription termination factor Rho	peg	gi|49175990|ref|NC_000913.2|_3964440_3965699		transcription termination factor Rho		CDS	transcription termination factor Rho	3.6.4.-	rho	
+	3965709	3965927	219	orf; Unknown function	peg	gi|49175990|ref|NC_000913.2|_3965709_3965927		hypothetical protein		CDS	conserved hypothetical protein			
+	3965939	3967042	1104	Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)	peg	gi|49175990|ref|NC_000913.2|_3965939_3967042		undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	2.7.8.33	CDS	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	2.7.8.33	wecA	
+	3967054	3968100	1047	regulator of length of O-antigen component of lipopolysaccharide chains	peg	gi|49175990|ref|NC_000913.2|_3967054_3968100		Chain length determinant protein		CDS	lipopolysaccharide biosynthesis protein wzzE		wzzE	
+	3968156	3969286	1131	UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)	peg	gi|49175990|ref|NC_000913.2|_3968201_3969286		UDP-N-acetylglucosamine 2-epimerase	5.1.3.14	CDS	UDP-N-acetylglucosamine 2-epimerase	5.1.3.14		
+	3969283	3970545	1263	UDP-glucose dehydrogenase (EC 1.1.1.22)	peg	gi|49175990|ref|NC_000913.2|_3969283_3970545		nucleotide sugar dehydrogenase	1.1.1.-	CDS	nucleotide sugar dehydrogenase family protein			
+	3970545	3971612	1068	"dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)"	peg	gi|49175990|ref|NC_000913.2|_3970545_3971612		dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46	CDS	dTDP-glucose 4,6-dehydratase	4.2.1.46	rfbB	
+	3971631	3972512	882	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	peg	gi|49175990|ref|NC_000913.2|_3971631_3972512		Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24	CDS	glucose-1-phosphate thymidylyltransferase	2.7.7.24	rfbA	
+	3972490	3973164	675	Lipopolysaccharide biosynthesis protein RffC	peg	gi|49175990|ref|NC_000913.2|_3972490_3973164		TDP-D-fucosamine acetyltransferase		CDS	TDP-D-fucosamine acetyltransferase		wecD	
+	3973169	3974299	1131	4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase	peg	gi|49175990|ref|NC_000913.2|_3973169_3974299		TDP-4-keto-6-deoxy-D-glucose transaminase		CDS	TDP-4-keto-6-deoxy-D-glucose transaminase family protein		wecE	
+	3974301	3975551	1251	WzxE protein	peg	gi|49175990|ref|NC_000913.2|_3974301_3975551		Membrane protein involved in the export of O-antigen and teichoic acid		CDS	protein wzxE		wzxE	
+	3975548	3976627	1080	4-alpha-L-fucosyltransferase (EC 2.4.1.-)	peg	gi|49175990|ref|NC_000913.2|_3975548_3976627		4-alpha-L-fucosyltransferase glycosyl transferase group 56.	2.4.1.-	CDS	4-alpha-L-fucosyltransferase	2.4.1.-	wecF	
+	3976624	3977976	1353	Putative ECA polymerase	peg	gi|49175990|ref|NC_000913.2|_3976624_3977976		WzyE protein.	2.4.1.-	CDS	wzyE family protein			
+	3977979	3978719	741	Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-)	peg	gi|49175990|ref|NC_000913.2|_3977979_3978719		bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family	2.4.1.-	CDS	glycosyltransferase, WecB/TagA/CpsF family protein	2.4.1.-		
+	3978910	3980295	1386	Probable transport protein YifK	peg	gi|49175990|ref|NC_000913.2|_3978910_3980295		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	putative transport protein YifK			
+	3980981	3982216	1236	Putative arylsulfatase regulatory protein	peg	gi|49175990|ref|NC_000913.2|_3980981_3982216		anaerobic sulfatase-maturating enzyme		CDS	anaerobic sulfatase maturase	1.1.99.-		
-	3982375	3984030	1656	Arylsulfatase (EC 3.1.6.1)	peg	gi|49175990|ref|NC_000913.2|_3984030_3982375		Arylsulfatase A and related enzymes	3.1.6.1	CDS	type I phosphodiesterase / nucleotide pyrophosphatase family protein			
-	3984709	3985905	1197	Homolog of E. coli HemY protein	peg	gi|49175990|ref|NC_000913.2|_3985905_3984709		Uncharacterized enzyme of heme biosynthesis		CDS	hemY family protein			
-	3985908	3987089	1182	Homolog of E. coli HemX protein	peg	gi|49175990|ref|NC_000913.2|_3987089_3985908		Uncharacterized enzyme of heme biosynthesis	2.1.1.107	CDS	putative uroporphyrinogen-III C-methyltransferase			
-	3987111	3987851	741	Uroporphyrinogen-III synthase (EC 4.2.1.75)	peg	gi|49175990|ref|NC_000913.2|_3987851_3987111		Uroporphyrinogen-III synthase	4.2.1.75	CDS	uroporphyrinogen-III synthase HemD family protein			
-	3987848	3988810	963	Porphobilinogen deaminase (EC 2.5.1.61)	peg	gi|49175990|ref|NC_000913.2|_3988810_3987848		hydroxymethylbilane synthase (EC 2.5.1.61)	2.5.1.61	CDS	porphobilinogen deaminase	2.5.1.61	hemC	
+	3989176	3991722	2547	Adenylate cyclase (EC 4.6.1.1)	peg	gi|49175990|ref|NC_000913.2|_3989176_3991722		adenylate cyclase	4.6.1.1	CDS	adenylate cyclase, class-I family protein			
-	3991762	3992082	321	"Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly"	peg	gi|49175990|ref|NC_000913.2|_3992082_3991762		iron donor protein CyaY		CDS	iron donor protein CyaY		cyaY	
+	3992197	3992358	162	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3992197_3992358					putative gatC			
+	3992545	3992748	204	Putative lipoprotein	peg	gi|49175990|ref|NC_000913.2|_3992545_3992748		Predicted small periplasmic lipoprotein		CDS	prokaryotic lipo-attachment site family protein			
+	3992785	3993609	825	Diaminopimelate epimerase (EC 5.1.1.7)	peg	gi|49175990|ref|NC_000913.2|_3992785_3993609		diaminopimelate epimerase (EC 5.1.1.7)	5.1.1.7	CDS	diaminopimelate epimerase	5.1.1.7	dapF	
+	3993606	3994313	708	Protein of unknown function DUF484	peg	gi|49175990|ref|NC_000913.2|_3993606_3994313		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	3994310	3995206	897	Tyrosine recombinase XerC	peg	gi|49175990|ref|NC_000913.2|_3994310_3995206		tyrosine recombinase XerC subunit		CDS	tyrosine recombinase XerC		xerC	
+	3995206	3995922	717	2-haloalkanoic acid dehalogenase (EC 3.8.1.2)	peg	gi|49175990|ref|NC_000913.2|_3995206_3995922		haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	HAD hydrolase, IA, variant 1 family protein			
+	3996006	3998168	2163	ATP-dependent DNA helicase UvrD/PcrA	peg	gi|49175990|ref|NC_000913.2|_3996006_3998168		ATP-dependent DNA helicase UvrD (EC 3.6.1.-)	3.6.4.12	CDS	DNA helicase II	3.6.4.12	uvrD	
-	3998315	3999079	765	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_3999079_3998315		Predicted periplasmic protein		CDS	conserved hypothetical protein			
+	3999449	4000399	951	Magnesium and cobalt transport protein CorA	peg	gi|49175990|ref|NC_000913.2|_3999449_4000399		magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)		CDS	magnesium and cobalt transport protein CorA		corA	
-	4000442	4000822	381	FIG01047791: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4000822_4000442		Protein of unknown function (DUF2628).		CDS	conserved hypothetical protein			
-	4000836	4001216	381	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4000949_4000836		hypothetical protein		CDS	inner membrane protein yigG		yigG	
-	4001311	4002201	891	Protein rarD	peg	gi|49175990|ref|NC_000913.2|_4002201_4001311		rarD protein		CDS	protein rarD		rarD	
-	4002253	4002720	468	"putative protein PaaI, possibly involved in aromatic compounds catabolism"	peg	gi|49175990|ref|NC_000913.2|_4002720_4002253		uncharacterized domain 1		CDS	conserved hypothetical protein			
+	4002885	4003754	870	"Phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); Outer membrane phospholipase A"	peg	gi|49175990|ref|NC_000913.2|_4002885_4003754		Outer membrane phospholipase A	3.1.1.32	CDS	phospholipase A1	3.1.1.4	pldA	
+	4003881	4005716	1836	ATP-dependent DNA helicase RecQ	peg	gi|49175990|ref|NC_000913.2|_4003881_4005716		ATP-dependent DNA helicase RecQ (EC 3.6.1.-)	3.6.4.12	CDS	ATP-dependent DNA helicase RecQ	3.6.4.12	recQ	
+	4005780	4006400	621	L-lysine permease	peg	gi|49175990|ref|NC_000913.2|_4005780_4006400		The Resistance to Homoserine/Threonine (RhtB) Family protein		CDS	threonine efflux protein		rhtC	
-	4006462	4007082	621	Homoserine/homoserine lactone efflux protein	peg	gi|49175990|ref|NC_000913.2|_4007082_4006462		The Resistance to Homoserine/Threonine (RhtB) Family protein		CDS	homoserine/homoserine lactone efflux protein		rhtB	
+	4007193	4008215	1023	Lysophospholipase L2 (EC 3.1.1.5)	peg	gi|49175990|ref|NC_000913.2|_4007193_4008215		Lysophospholipase	3.1.1.5	CDS	alpha/beta hydrolase fold family protein			
+	4008223	4009023	801	"Cof protein, HD superfamily hydrolase"	peg	gi|49175990|ref|NC_000913.2|_4008223_4009023		HAD-superfamily hydrolase, subfamily IIB		CDS	conserved protein, phosphatase-like domain		yigL	
-	4009886	4010839	954				Transcriptional regulator		CDS				
+	4009099	4009998	900	FIG00639538: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4009099_4009998		Carboxylate/Amino Acid/Amine Transporter		CDS	carboxylate/amino acid/amine transporter family protein		yedA	
+	4011076	4013337	2262	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)	peg	gi|49175990|ref|NC_000913.2|_4011076_4013337		methionine synthase (B12-independent) (EC 2.1.1.14)	2.1.1.14	CDS	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	2.1.1.14	metE	
-	4013377	4014192	816	Putative carboxymethylenebutenolidase (EC 3.1.1.45)	peg	gi|49175990|ref|NC_000913.2|_4014192_4013377		Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	putative dienelactone hydrolase			
+	4014454	4015215	762	Uridine phosphorylase (EC 2.4.2.3)	peg	gi|49175990|ref|NC_000913.2|_4014454_4015215		uridine phosphorylase	2.4.2.3	CDS	uridine phosphorylase	2.4.2.3	udp	
+	4015356	4016783	1428	DNA recombination protein RmuC	peg	gi|49175990|ref|NC_000913.2|_4015356_4016783		Uncharacterized protein conserved in bacteria		CDS	DNA recombination protein rmuC		rmuC	
+	4016878	4017633	756	"Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163)"	peg	gi|49175990|ref|NC_000913.2|_4016878_4017633		ubiquinone/menaquinone biosynthesis methyltransferases	2.1.1.163, 2.1.1.201	CDS	ubiquinone/menaquinone biosynthesis methyltransferase ubiE	2.1.1.201	ubiE	
+	4017647	4018252	606	Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes	peg	gi|49175990|ref|NC_000913.2|_4017647_4018252		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	4018249	4019889	1641	Ubiquinone biosynthesis monooxygenase UbiB	peg	gi|49175990|ref|NC_000913.2|_4018249_4019889		2-octaprenylphenol hydroxylase (EC 1.14.13.-)		CDS	2-polyprenylphenol 6-hydroxylase	1.14.13.-	ubiB	
+	4019968	4020237	270	Twin-arginine translocation protein TatA	peg	gi|49175990|ref|NC_000913.2|_4019968_4020237		twin arginine-targeting protein translocase, TatA/E family		CDS	twin arginine-targeting translocase, TatA/E family protein		tatA	
+	4020241	4020756	516	Twin-arginine translocation protein TatB	peg	gi|49175990|ref|NC_000913.2|_4020241_4020756		Sec-independent protein translocase TatB		CDS	twin arginine-targeting protein translocase TatB		tatB	
+	4020759	4021535	777	Twin-arginine translocation protein TatC	peg	gi|49175990|ref|NC_000913.2|_4020759_4021535		Sec-independent protein translocase TatC		CDS	twin arginine-targeting protein translocase TatC		tatC	
-	4022356	4022844	489	Transcriptional activator RfaH	peg	gi|49175990|ref|NC_000913.2|_4022844_4022356		transcriptional activator RfaH		CDS	transcriptional activator RfaH		rfaH	
+	4021577	4022359	783	Deoxyribonuclease TatD	peg	gi|49175990|ref|NC_000913.2|_4021577_4022359		Sec-independent protein translocase TatD (EC 3.1.21.-)	3.1.21.-	CDS	deoxyribonuclease tatD	3.1.21.-	tatD	
+	4023011	4024504	1494	3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_4023011_4024504		3-octaprenyl-4hydroxybenzoate decarboxylase (EC 4.1.1.-)	4.1.1.-	CDS	ubiD decarboxylase family protein	4.1.1.-	ubiD	
+	4024550	4025251	702	NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3)	peg	gi|49175990|ref|NC_000913.2|_4024550_4025251		2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases	1.16.1.3	CDS	NAD(P)H-flavin reductase		fre	
-	4025632	4026795	1164	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	peg	gi|49175990|ref|NC_000913.2|_4026795_4025632		fatty oxidation complex, beta subunit FadA	2.3.1.16	CDS	acetyl-CoA C-acyltransferase FadA	2.3.1.16	fadA	
-	4026805	4028994	2190	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	peg	gi|49175990|ref|NC_000913.2|_4028994_4026805		fatty oxidation complex, alpha subunit FadB	1.1.1.35, 4.2.1.17, 5.1.2.3, 5.3.3.8	CDS	fatty oxidation complex, alpha subunit FadB	4.2.1.17	fadB	
+	4029184	4030515	1332	Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)	peg	gi|49175990|ref|NC_000913.2|_4029184_4030515		Xaa-Pro aminopeptidase	3.4.13.9	CDS	xaa-Pro dipeptidase	3.4.13.9	pepQ	
+	4030515	4031129	615	FIG000605: protein co-occurring with transport systems (COG1739)	peg	gi|49175990|ref|NC_000913.2|_4030515_4031129		uncharacterized protein, YigZ family		CDS	conserved hypothetical protein			
+	4031168	4032619	1452	Potassium uptake protein TrkH	peg	gi|49175990|ref|NC_000913.2|_4031168_4032619		potassium uptake protein, TrkH family		CDS	potassium uptake protein TrkH			
+	4032631	4033176	546	"Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)"	peg	gi|49175990|ref|NC_000913.2|_4032631_4033176		protoporphyrinogen oxidase (EC 1.3.3.4)	1.3.5.3	CDS	protoporphyrinogen IX dehydrogenase [menaquinone]	1.3.5.3	hemG	
+	4033572	4034995	1424										
+	4033554	4035095	1542										
+	4035545	4038445	2901							conserved hypothetical protein			
+	4035542	4038466	2925										
-	4038929	4039456	528	Molybdopterin-guanine dinucleotide biosynthesis protein MobB	peg	gi|49175990|ref|NC_000913.2|_4039456_4038929		molybdopterin guanine dinucleotide biosynthesis accessory protein MobB		CDS	molybdopterin-guanine dinucleotide biosynthesis protein B		mobB	
-	4039438	4040022	585	Molybdopterin-guanine dinucleotide biosynthesis protein MobA	peg	gi|49175990|ref|NC_000913.2|_4040022_4039438		molybdenum cofactor guanylyltransferase (EC 2.7.7.77)		CDS	molybdopterin-guanine dinucleotide biosynthesis protein A		mobA	
+	4040092	4040361	270	Protein yihD	peg	gi|49175990|ref|NC_000913.2|_4040092_4040361		Uncharacterized protein conserved in bacteria		CDS	protein yihD		yihD	
+	4040438	4041424	987	"YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling"	peg	gi|49175990|ref|NC_000913.2|_4040438_4041424		Putative homoserine kinase type II (protein kinase fold)		CDS	phosphotransferase enzyme family protein			
+	4041441	4042067	627	Periplasmic thiol:disulfide interchange protein DsbA	peg	gi|49175990|ref|NC_000913.2|_4041441_4042067		Thiol:disulfide interchange protein DsbA		CDS	thiol:disulfide interchange protein DsbA		dsbA	
+	4042222	4043652	1431	Putative GTP-binding protein	peg	gi|49175990|ref|NC_000913.2|_4042222_4043652		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	4043693	4044625	933	Probable acyltransferase yihG (EC 2.3.-.-)	peg	gi|49175990|ref|NC_000913.2|_4044436_4043693		1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	putative acyltransferase yihG			
-	4044745	4044987	243	FIG00639588: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4044930_4044745					conserved hypothetical protein			
+	4044989	4047775	2787	DNA polymerase I (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_4044989_4047775		DNA polymerase I (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase I	2.7.7.7	polA	
-	4048156	4048788	633	GTP-binding protein EngB	peg	gi|49175990|ref|NC_000913.2|_4048788_4048156		cell division checkpoint GTPase YihA		CDS	ribosome biogenesis GTP-binding protein YsxC		ysxC	
+	4049059	4049312	254										
+	4049370	4049879	510	Protein of unknown function DUF414	peg	gi|49175990|ref|NC_000913.2|_4049370_4049879		Uncharacterized protein conserved in bacteria		CDS	der GTPase-activating protein YihI		yihI	
+	4050068	4051441	1374	"Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)"	peg	gi|49175990|ref|NC_000913.2|_4050068_4051441		coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22)	1.3.99.22	CDS	oxygen-independent coproporphyrinogen III oxidase	1.3.99.22	hemN	
+	4051594	4051771	178							conserved hypothetical protein			
-	4051892	4053310	1419	Nitrogen regulation protein NtrC	peg	gi|49175990|ref|NC_000913.2|_4053310_4051892		nitrogen regulation protein NR(I)		CDS	nitrogen regulation protein NR		ntrC	
-	4053313	4054362	1050	histidine protein kinase sensor for GlnG regulator	peg	gi|49175990|ref|NC_000913.2|_4054362_4053313		PAS/PAC sensor signal transduction histidine kinase (EC 2.7.13.3)	2.7.13.3	CDS	nitrogen regulation protein NR	2.7.13.3	glnL	
-	4054648	4056057	1410	Glutamine synthetase type I (EC 6.3.1.2)	peg	gi|49175990|ref|NC_000913.2|_4056057_4054648		L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	glutamine synthetase, type I	6.3.1.2	glnA	
+	4056430	4058253	1824	GTP-binding protein TypA/BipA	peg	gi|49175990|ref|NC_000913.2|_4056430_4058253		GTP-binding protein TypA/BipA		CDS	GTP-binding protein TypA/BipA		typA	
+	4058470	4059180	711	Hypothetical transcriptional regulator yihL	peg	gi|49175990|ref|NC_000913.2|_4058470_4059180		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	4059188	4060168	981	FIG00638475: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4059290_4060168		Sugar phosphate isomerases/epimerases		CDS	xylose isomerase-like TIM barrel family protein			
+	4060270	4061535	1266	Putative resistance protein	peg	gi|49175990|ref|NC_000913.2|_4060270_4061535		Sugar phosphate permease		CDS	inner membrane protein yihN		yihN	
-	4061626	4062318	693	Outer membrane sugar transport protein YshA	peg	gi|49175990|ref|NC_000913.2|_4062318_4061626		porin OmpL (TC 1.B.21.2.1)		CDS	porin ompL		ompL	
-	4062386	4063789	1404	Glucuronide transport protein YihO	peg	gi|49175990|ref|NC_000913.2|_4063789_4062386		sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	inner membrane symporter yihP		yihP	
-	4063832	4065238	1407	"Glucuronide transport protein YihP, homologous to YihO"	peg	gi|49175990|ref|NC_000913.2|_4065238_4063832		sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	inner membrane symporter yihP		yihP	
-	4065263	4067299	2037	Alpha-glucosyltransferase YihQ	peg	gi|49175990|ref|NC_000913.2|_4067299_4065263		Alpha-glucosidases, family 31 of glycosyl hydrolases	3.2.1.20	CDS	glycosyl hydrolases 31 family protein			
-	4067498	4068424	927	Sugar-1-epimerase YihR	peg	gi|49175990|ref|NC_000913.2|_4068400_4067498		Galactose mutarotase and related enzymes		CDS	aldose 1-epimerase family protein			
-	4068538	4069779	1242	Aldose-ketose isomerase YihS	peg	gi|49175990|ref|NC_000913.2|_4069779_4068538		N-acyl-D-glucosamine 2-epimerase		CDS	conserved hypothetical protein			
-	4069796	4070674	879	Aldolase YihT	peg	gi|49175990|ref|NC_000913.2|_4070674_4069796		Tagatose-1,6-bisphosphate aldolase		CDS	conserved hypothetical protein			
-	4070698	4071594	897	Oxidoreductase YihU	peg	gi|49175990|ref|NC_000913.2|_4071594_4070698		3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases	1.1.-	CDS	NAD binding domain of 6-phosphogluconate dehydrogenase family protein			
+	4071762	4072658	897	Fructokinase (EC 2.7.1.4); Sugar kinase YihV	peg	gi|49175990|ref|NC_000913.2|_4071762_4072658		Sugar kinases, ribokinase family		CDS	pfkB carbohydrate kinase family protein			
+	4072692	4073477	786	DeoR-type transcriptional regulator YihW	peg	gi|49175990|ref|NC_000913.2|_4072692_4073477		transcriptional regulator, DeoR family		CDS	glycerol-3-phosphate regulon repressor		glpR	
+	4073576	4074175	600	probable haloacid dehalogenase-like hydrolase STY3852	peg	gi|49175990|ref|NC_000913.2|_4073576_4074175		haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED		CDS	phosphatase yihX	3.1.3.-	yihX	
+	4074169	4075041	873	"Inner membrane protein YihY, formerly thought to be RNase BN"	peg	gi|49175990|ref|NC_000913.2|_4074169_4075041		tRNA-processing RNAse BN (EC 3.1.-.-)		CDS	conserved hypothetical protein			
+	4075038	4075475	438	D-tyrosyl-tRNA(Tyr) deacylase	peg	gi|49175990|ref|NC_000913.2|_4075038_4075475		D-tyrosyl-tRNA(Tyr) deacylase	3.1.-	CDS	D-tyrosyl-tRNA(Tyr) deacylase	3.1.-.-	dtd	
+	4075520	4076461	942	"galactoside O-acetyltransferase (EC 2.3.1.18), probable YiiD"	peg	gi|49175990|ref|NC_000913.2|_4075520_4076461		thioesterase domain, putative		CDS	putative thioesterase domain protein			
+	4077314	4077532	219	FIG00638378: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4077314_4077532		Ribbon-helix-helix protein, copG family.		CDS	ribbon-helix-helix , copG family protein			
+	4077750	4077992	243	FIG00638378: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4077774_4077992		hypothetical protein		CDS	conserved hypothetical protein			
+	4077992	4078174	183	FIG00640449: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4077992_4078174		hypothetical protein		CDS				
-	4078322	4079251	930	formate dehydrogenase formation protein FdhE	peg	gi|49175990|ref|NC_000913.2|_4079251_4078322		Tat proofreading chaperone FdhE		CDS	formate dehydrogenase accessory protein FdhE		fdhE	
-	4079248	4079883	636	Formate dehydrogenase O gamma subunit (EC 1.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_4079883_4079248		formate dehydrogenase, gamma subunit		CDS	formate dehydrogenase, gamma subunit	1.2.1.2		
-	4079880	4080782	903	Formate dehydrogenase O beta subunit (EC 1.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_4080782_4079880		formate dehydrogenase (quinone-dependent) iron-sulfur subunit		CDS	formate dehydrogenase, beta subunit	1.2.1.2	fdxH	
-	4080795	4083845	3051	Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing	peg	gi|49175990|ref|NC_000913.2|_4083845_4080795		formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2	CDS	formate dehydrogenase, alpha subunit	1.2.1.2		
-	4083258	4083845	588				formate dehydrogenase (quinone-dependent) catalytic subunit	1.2.1.2	CDS	molybdopterin oxidoreductase family protein			
+	4083849	4084103	255	bogus protein	peg	gi|49175990|ref|NC_000913.2|_4083849_4084103					conserved hypothetical protein			
+	4084039	4084872	834	Formate dehydrogenase chain D (EC 1.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_4084072_4084872		formate dehydrogenase family accessory protein FdhD		CDS	formate dehydrogenase family accessory protein FdhD			
+	4085025	4086080	1056	FIG00638858: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4085025_4086080		Protein of unknown function (DUF3829).		CDS	conserved hypothetical protein			
-	4086130	4087878	1749	Putative frv operon regulatory protein	peg	gi|49175990|ref|NC_000913.2|_4087878_4086130		transcriptional antiterminator, BglG family		CDS	putative frv operon regulatory protein			
-	4087878	4088948	1071	FIG00638402: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4088948_4087878		Cellulase M and related proteins		CDS	putative aminopeptidase ysdC			
-	4088938	4090389	1452	"PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_4090389_4088938		PTS system IIB component, Fru family (TC 4.A.2)/PTS system IIC component, Fru family (TC 4.A.2)		CDS	PTS system, Fru family, IIB component domain protein	2.7.1.69		
-	4090400	4090846	447	"PTS system, fructose-specific IIA component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_4090846_4090400		PTS system IIA component, Fru family (TC 4.A.2)	2.7.1.69	CDS	fructose-like phosphotransferase enzyme IIA component	2.7.1.-	frvA	
-	4091147	4091461	315	L-rhamnose mutarotase	peg	gi|49175990|ref|NC_000913.2|_4091461_4091147		L-rhamnose 1-epimerase	5.1.3.-	CDS	L-rhamnose 1-epimerase	5.1.3.-	rhaU	
-	4091471	4092295	825	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	peg	gi|49175990|ref|NC_000913.2|_4092295_4091471		L-rhamnulose 1-phosphate aldolase (EC 4.1.2.19)	4.1.2.19	CDS	rhamnulose-1-phosphate aldolase	4.1.2.19	rhaD	
-	4092746	4094005	1260	L-rhamnose isomerase (EC 5.3.1.14)	peg	gi|49175990|ref|NC_000913.2|_4094005_4092746		L-rhamnose isomerase (EC 5.3.1.14)	5.3.1.14	CDS	L-rhamnose isomerase	5.3.1.14	rhaA	
-	4094002	4095471	1470	Rhamnulokinase (EC 2.7.1.5)	peg	gi|49175990|ref|NC_000913.2|_4095471_4094002		L-rhamnulokinase (EC 2.7.1.5)	2.7.1.5	CDS	rhamnulokinase	2.7.1.5	rhaB	
+	4095759	4096595	837	L-rhamnose operon regulatory protein RhaS	peg	gi|49175990|ref|NC_000913.2|_4095759_4096595		transcriptional regulator, AraC family		CDS	cupin domain protein			
-	4097514	4098548	1035	L-rhamnose-proton symporter	peg	gi|49175990|ref|NC_000913.2|_4098548_4097514		RhaT L-rhamnose-proton symporter family protein		CDS	L-rhamnose-proton symporter		rhaT	
+	4096579	4097517	939	L-rhamnose operon transcriptional activator RhaR	peg	gi|49175990|ref|NC_000913.2|_4096579_4097517		transcriptional regulator, AraC family		CDS	HTH-type transcriptional activator rhaR		rhaR	
+	4098833	4099453	621	Manganese superoxide dismutase (EC 1.15.1.1)	peg	gi|49175990|ref|NC_000913.2|_4098833_4099453		Superoxide dismutase	1.15.1.1	CDS	superoxide dismutase [Mn]	1.15.1.1	sodA	
+	4099713	4100696	984	2-keto-3-deoxygluconate permease (KDG permease)	peg	gi|49175990|ref|NC_000913.2|_4099713_4100696		2-keto-3-deoxygluconate permease (TC 2.A.10.1.1)		CDS	2-keto-3-deoxygluconate transporter		kdgT	
+	4100845	4101519	675	Uncharacterized protein conserved in bacteria	peg	gi|49175990|ref|NC_000913.2|_4100845_4101519		Uncharacterized protein conserved in bacteria		CDS	protein yiiM		yiiM	
-	4101625	4102998	1374	Copper sensory histidine kinase CpxA	peg	gi|49175990|ref|NC_000913.2|_4102998_4101625		Signal transduction histidine kinase	2.7.13.3	CDS	sensor protein CpxA	2.7.13.3	cpxA	
-	4102995	4103693	699	Copper-sensing two-component system response regulator CpxR	peg	gi|49175990|ref|NC_000913.2|_4103627_4102995		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory protein CpxR		cpxR	
+	4103843	4104343	501	"P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein"	peg	gi|49175990|ref|NC_000913.2|_4103843_4104343		P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein		CDS	periplasmic protein CpxP		cpxP	
+	4104492	4105394	903	Cobalt-zinc-cadmium resistance protein	peg	gi|49175990|ref|NC_000913.2|_4104492_4105394		cation diffusion facilitator family transporter		CDS	ferrous-iron efflux pump FieF		fieF	
+	4105575	4106537	963	6-phosphofructokinase (EC 2.7.1.11)	peg	gi|49175990|ref|NC_000913.2|_4105575_4106537		6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	6-phosphofructokinase	2.7.1.11	pfkA	
+	4106857	4107846	990	Sulfate-binding protein Sbp	peg	gi|49175990|ref|NC_000913.2|_4106857_4107846		sulfate/thiosulfate-binding protein		CDS	sulfate-binding protein		sbp	
+	4107953	4108708	756	CDP-diacylglycerol pyrophosphatase (EC 3.6.1.26)	peg	gi|49175990|ref|NC_000913.2|_4107953_4108708		CDP-diacylglycerol pyrophosphatase, bacterial type	3.6.1.26	CDS	CDP-diacylglycerol pyrophosphatase	3.6.1.26	cdh	
-	4108763	4109530	768	Triosephosphate isomerase (EC 5.3.1.1)	peg	gi|49175990|ref|NC_000913.2|_4109530_4108763		triosephosphate isomerase (EC 5.3.1.1)	5.3.1.1	CDS	triose-phosphate isomerase	5.3.1.1	tpiA	
-	4109638	4110237	600	Putative uncharacterized protein YiiQ	peg	gi|49175990|ref|NC_000913.2|_4110237_4109638		Protein of unknown function (DUF1454).		CDS	conserved hypothetical protein			
+	4110338	4110778	441	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_4110338_4110778		Predicted membrane protein		CDS	conserved hypothetical protein			
+	4110990	4111289	300	FIG00639264: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4110990_4111289		conserved hypothetical protein		CDS	conserved hypothetical protein			
+	4111316	4111744	429	Universal stress protein D	peg	gi|49175990|ref|NC_000913.2|_4111316_4111744		Universal stress protein UspA and related nucleotide-binding proteins		CDS	universal stress family protein			
-	4111749	4112495	747	Ferredoxin--NADP(+) reductase (EC 1.18.1.2)	peg	gi|49175990|ref|NC_000913.2|_4112495_4111749		Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	1.18.1.2	CDS	ferredoxin--NADP reductase	1.18.1.2	fpr	
-	4112592	4113602	1011	"Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11)"	peg	gi|49175990|ref|NC_000913.2|_4113602_4112592		fructose-1,6-bisphosphatase, class II	3.1.3.11	CDS	fructose-1,6-bisphosphatase, class II	3.1.3.11	glpX	
-	4113737	4115245	1509	Glycerol kinase (EC 2.7.1.30)	peg	gi|49175990|ref|NC_000913.2|_4115245_4113737		glycerol kinase (EC 2.7.1.30)	2.7.1.30	CDS	glycerol kinase	2.7.1.30	glpK	
-	4115268	4116113	846	Glycerol uptake facilitator protein	peg	gi|49175990|ref|NC_000913.2|_4116113_4115268		MIP family channel proteins		CDS	glycerol uptake facilitator protein		glpF	
+	4116538	4116783	246	Putative cytoplasmic protein	peg	gi|49175990|ref|NC_000913.2|_4116538_4116783		Uncharacterized protein conserved in bacteria		CDS	cell division protein ZapB		zapB	
-	4116868	4117353	486	Ribonuclease E inhibitor RraA	peg	gi|49175990|ref|NC_000913.2|_4117353_4116868		regulator of ribonuclease activity A		CDS	regulator of ribonuclease activity A		rraA	
-	4117446	4118384	939	"1,4-dihydroxy-2-naphthoate octaprenyltransferase (EC 2.5.1.74)"	peg	gi|49175990|ref|NC_000913.2|_4118384_4117446		1,4-dihydroxy-2-naphthoate prenyltransferase (EC 2.5.1.74)	2.5.1.-, 2.5.1.74	CDS	1,4-dihydroxy-2-naphthoate octaprenyltransferase	2.5.1.74	menA	
-	4118439	4119770	1332	ATP-dependent hsl protease ATP-binding subunit HslU	peg	gi|49175990|ref|NC_000913.2|_4119770_4118439		ATP-dependent protease HslVU, ATPase subunit		CDS	ATP-dependent protease HslVU, ATPase subunit		hslU	
-	4119780	4120310	531	ATP-dependent protease HslV (EC 3.4.25.-)	peg	gi|49175990|ref|NC_000913.2|_4120310_4119780		HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B	3.4.25.2	CDS	ATP-dependent protease HslVU, peptidase subunit	3.4.25.2	hslV	
-	4120403	4121257	855	Cell division protein FtsN	peg	gi|49175990|ref|NC_000913.2|_4121257_4120403		cell division protein FtsN		CDS	cell division protein FtsN		ftsN	
-	4121454	4122479	1026	Transcriptional (co)regulator CytR	peg	gi|49175990|ref|NC_000913.2|_4122446_4121454		transcriptional regulator, LacI family		CDS	periplasmic binding s and sugar binding domain of LacI family protein			
-	4122635	4124833	2199	Helicase PriA essential for oriC/DnaA-independent DNA replication	peg	gi|49175990|ref|NC_000913.2|_4124833_4122635		replication restart DNA helicase PriA	3.6.4.-	CDS	primosomal protein N'	3.6.1.-	priA	
+	4125036	4125248	213	"LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent"	peg	gi|49175990|ref|NC_000913.2|_4125036_4125248		LSU ribosomal protein L31P		CDS	ribosomal protein L31		rpmE	
-	4125309	4125917	609	FIG00638928: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4125917_4125309		Orthopoxvirus protein of unknown function (DUF830).		CDS	conserved hypothetical protein			
-	4126101	4126418	318	Methionine repressor MetJ	peg	gi|49175990|ref|NC_000913.2|_4126418_4126101		methionine repressor, MetJ		CDS	met Apo-repressor, MetJ family protein			
+	4126695	4127855	1161	Cystathionine gamma-synthase (EC 2.5.1.48)	peg	gi|49175990|ref|NC_000913.2|_4126695_4127855		cystathionine gamma-synthase (EC 2.5.1.48)	2.5.1.48	CDS	O-succinylhomoserine (thiol)-lyase	2.5.1.48	metB	
+	4127858	4130290	2433	Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)	peg	gi|49175990|ref|NC_000913.2|_4127858_4130290		aspartate kinase	1.1.1.3, 2.7.2.4	CDS	bifunctional aspartokinase/homoserine dehydrogenase 2	1.1.1.3	metL	
+	4130639	4131529	891	"5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)"	peg	gi|49175990|ref|NC_000913.2|_4130639_4131529		5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20)	1.5.1.20	CDS	5,10-methylenetetrahydrofolate reductase	1.5.1.20	metF	
+	4131858	4134038	2181	Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)	peg	gi|49175990|ref|NC_000913.2|_4131858_4134038		catalase/peroxidase HPI	1.11.1.21	CDS	catalase/peroxidase HPI	1.11.1.6	katG	
+	4134131	4135036	906	FIG00638276: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4134131_4135036		Predicted permeases		CDS	conserved hypothetical protein			
-	4135063	4135680	618	FIG00638062: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4135680_4135063		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	4135955	4137058	1104	Glycerol dehydrogenase (EC 1.1.1.6)	peg	gi|49175990|ref|NC_000913.2|_4137058_4135955		glycerol 2-dehydrogenase (NAD+) (EC 1.1.1.6)	1.1.1.6	CDS	glycerol dehydrogenase	1.1.1.6	gldA	
-	4137069	4137731	663	Transaldolase (EC 2.2.1.2)	peg	gi|49175990|ref|NC_000913.2|_4137731_4137069		fructose 6-phosphate aldolase (EC 4.1.2.-)	4.1.2.-	CDS	fructose-6-phosphate aldolase	4.1.2.-	fsa	
-	4137743	4140244	2502	Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)	peg	gi|49175990|ref|NC_000913.2|_4140244_4137743		Phosphocarrier protein HPr/phosphoenolpyruvate--protein phosphotransferase (EC 2.7.3.9)/PTS system unknown substrate IIA component, Fru family (TC 4.A.2.1.10)	2.7.1.69	CDS	phosphoenolpyruvate-protein phosphotransferase	2.7.3.9	ptsP	
+	4140553	4141632	1080	"PTS system, fructose-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_4140553_4141632		PTS system unknown substrate IIC component, Fru family (TC 4.A.2.1.10)		CDS	PTS system, Fru family, IIC component domain protein			
+	4141647	4141967	321	PTS system fructose-like IIB component 1 precursor (EC 2.7.1.69)	peg	gi|49175990|ref|NC_000913.2|_4141647_4141967		PTS system unknown substrate IIB component 1, Fru family (TC 4.A.2.1.10)	2.7.1.69	CDS	fructose-like phosphotransferase enzyme IIB component 2	2.7.1.69	frwB	
+	4142018	4144315	2298	Pyruvate formate-lyase (EC 2.3.1.54)	peg	gi|49175990|ref|NC_000913.2|_4142018_4144315		pyruvate formate-lyase	2.3.1.54	CDS	glycerol dehydratase		dhaB1	
+	4144281	4145159	879	Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)	peg	gi|49175990|ref|NC_000913.2|_4144320_4145159		Pyruvate-formate lyase-activating enzyme	1.97.1.4	CDS	glycyl-radical enzyme activating family protein	1.97.1.-		
-	4145489	4146340	852	"Transcriptional regulator, AraC family"	peg	gi|49175990|ref|NC_000913.2|_4146340_4145489		transcriptional regulator, AraC family		CDS	bacterial regulatory helix-turn-helix s, AraC family protein			
+	4145161	4145502	342	PTS system fructose-like IIB component 2 precursor (EC 2.7.1.69)	peg	gi|49175990|ref|NC_000913.2|_4145161_4145502		PTS system unknown substrate IIB component 2, Fru family (TC 4.A.2.1.10)	2.7.1.69	CDS	fructose-like phosphotransferase enzyme IIB component 2	2.7.1.69	frwB	
-	4146555	4148288	1734	UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide	peg	gi|49175990|ref|NC_000913.2|_4148288_4146555		Predicted membrane-associated, metal-dependent hydrolase		CDS	phosphoethanolamine transferase CptA	2.7.-.-	cptA	
-	4148470	4151121	2652	Phosphoenolpyruvate carboxylase (EC 4.1.1.31)	peg	gi|49175990|ref|NC_000913.2|_4151121_4148470		Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31)	4.1.1.31	CDS	phosphoenolpyruvate carboxylase family protein			
-	4151719	4152870	1152	Acetylornithine deacetylase (EC 3.5.1.16)	peg	gi|49175990|ref|NC_000913.2|_4152870_4151719		acetylornithine deacetylase (ArgE)	3.5.1.16	CDS	acetylornithine deacetylase	3.5.1.16	argE	
+	4153024	4154028	1005	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	peg	gi|49175990|ref|NC_000913.2|_4153024_4154028		N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	1.2.1.38	CDS	N-acetyl-gamma-glutamyl-phosphate reductase	1.2.1.38	argC	
+	4154036	4154812	777	Acetylglutamate kinase (EC 2.7.2.8)	peg	gi|49175990|ref|NC_000913.2|_4154039_4154812		N-acetylglutamate kinase (EC 2.7.2.8)	2.7.2.8	CDS	acetylglutamate kinase	2.7.2.8	argB	
+	4154873	4156246	1374	Argininosuccinate lyase (EC 4.3.2.1)	peg	gi|49175990|ref|NC_000913.2|_4154873_4156246		argininosuccinate lyase (EC 4.3.2.1)	4.3.2.1	CDS	argininosuccinate lyase	4.3.2.1	argH	
-	4157413	4158813	1401	Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)	peg	gi|49175990|ref|NC_000913.2|_4158813_4157413		Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.6.1.1	CDS	pyridine nucleotide-disulfide oxidoreductase family protein			
+	4156513	4157430	918	Hydrogen peroxide-inducible genes activator	peg	gi|49175990|ref|NC_000913.2|_4156513_4157430		Transcriptional regulator		CDS	hydrogen peroxide-inducible gene activator		oxyR	
+	4159090	4159794	705	"Unsaturated fatty acid biosythesis repressor FabR, TetR family"	peg	gi|49175990|ref|NC_000913.2|_4159090_4159794		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	4159794	4160153	360	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_4159794_4160153		Protein of unknown function (DUF1422).		CDS	inner membrane protein yijD		yijD	
-	4160193	4161293	1101	tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35)	peg	gi|49175990|ref|NC_000913.2|_4161293_4160193		tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35)		CDS	tRNA (uracil-5-)-methyltransferase	2.1.1.35	trmA	
+	4161662	4163506	1845	Outer membrane vitamin B12 receptor BtuB	peg	gi|49175990|ref|NC_000913.2|_4161662_4163506		TonB-dependent vitamin B12 receptor		CDS	tonB-dependent vitamin B12 receptor		btuB	
+	4163451	4164308	858	Glutamate racemase (EC 5.1.1.3)	peg	gi|49175990|ref|NC_000913.2|_4163520_4164308		glutamate racemase (EC 5.1.1.3)	5.1.1.3	CDS	glutamate racemase	5.1.1.3	murI	
+	4164700	4166123	1424										
+	4164682	4166223	1542										
+	4166667	4169566	2900										
+	4166664	4169587	2924										
+	4170080	4171108	1029	UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158)	peg	gi|49175990|ref|NC_000913.2|_4170080_4171108		UDP-N-acetylmuramate dehydrogenase (EC 1.1.1.158)	1.1.1.158	CDS	UDP-N-acetylenolpyruvoylglucosamine reductase	1.1.1.158	murB	
+	4171105	4172070	966	Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15)	peg	gi|49175990|ref|NC_000913.2|_4171105_4172070		birA, biotin-[acetyl-CoA-carboxylase] ligase region/BirA biotin operon repressor domain	6.3.4.15	CDS	bifunctional protein BirA	6.3.4.15	birA	
-	4172099	4173049	951	Pantothenate kinase (EC 2.7.1.33)	peg	gi|49175990|ref|NC_000913.2|_4173049_4172099		pantothenate kinase (EC 2.7.1.33)	2.7.1.33	CDS	pantothenate kinase	2.7.1.33	coaA	
+	4173032	4173226	195	FIG00639135: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4173032_4173226					conserved hypothetical protein			
+	4173967	4175151	1185	Translation elongation factor Tu	peg	gi|49175990|ref|NC_000913.2|_4173967_4175151		translation elongation factor 1A (EF-1A/EF-Tu)		CDS	translation elongation factor Tu		tuf	
+	4175381	4175764	384	Preprotein translocase subunit SecE (TC 3.A.5.1.1)	peg	gi|49175990|ref|NC_000913.2|_4175381_4175764		protein translocase subunit secE/sec61 gamma		CDS	preprotein translocase, SecE subunit		secE	
+	4175766	4176311	546	Transcription antitermination protein NusG	peg	gi|49175990|ref|NC_000913.2|_4175766_4176311		transcription antitermination protein nusG		CDS	transcription termination/antitermination factor NusG		nusG	
+	4176470	4176898	429	LSU ribosomal protein L11p (L12e)	peg	gi|49175990|ref|NC_000913.2|_4176470_4176898		LSU ribosomal protein L11P		CDS	ribosomal protein L11		rplK	
+	4176902	4177606	705	LSU ribosomal protein L1p (L10Ae)	peg	gi|49175990|ref|NC_000913.2|_4176902_4177606		LSU ribosomal protein L1P		CDS	ribosomal protein L1		rplA	
+	4178019	4178516	498	LSU ribosomal protein L10p (P0)	peg	gi|49175990|ref|NC_000913.2|_4178019_4178516		LSU ribosomal protein L10P		CDS	50S ribosomal protein L10		rplJ	
+	4178583	4178948	366	LSU ribosomal protein L7/L12 (P1/P2)	peg	gi|49175990|ref|NC_000913.2|_4178583_4178948		LSU ribosomal protein L12P		CDS	ribosomal protein L7/L12		rplL	
+	4179268	4183296	4029	DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)	peg	gi|49175990|ref|NC_000913.2|_4179268_4183296		DNA-directed RNA polymerase subunit beta (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase, beta subunit	2.7.7.6	rpoB	
+	4183373	4187596	4224	DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)	peg	gi|49175990|ref|NC_000913.2|_4183373_4187596		DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase, beta' subunit	2.7.7.6	rpoC	
+	4187809	4188348	540	Heat shock protein C	peg	gi|49175990|ref|NC_000913.2|_4187809_4188348		hypothetical protein		CDS	heat shock protein C		htrC	
-	4188350	4188510	161										
-	4188758	4189891	1134	Thiazole biosynthesis protein ThiH	peg	gi|49175990|ref|NC_000913.2|_4189891_4188758		tyrosine lyase ThiH		CDS	thiazole biosynthesis protein ThiH		thiH	
-	4189888	4190658	771	Thiazole biosynthesis protein ThiG	peg	gi|49175990|ref|NC_000913.2|_4190658_4189888		thiazole-phosphate synthase		CDS	thiazole synthase	4.-.-.-	thiG	
-	4190660	4190860	201	Sulfur carrier protein ThiS	peg	gi|49175990|ref|NC_000913.2|_4190860_4190660		sulfur carrier protein ThiS		CDS	thiamine biosynthesis protein ThiS		thiS	
-	4190844	4191599	756	Sulfur carrier protein adenylyltransferase ThiF	peg	gi|49175990|ref|NC_000913.2|_4191599_4190844		[sulfur carrier protein ThiS] adenylyltransferase	2.7.7.73	CDS	thiazole biosynthesis adenylyltransferase ThiF	2.7.7.73	thiF	
-	4191592	4192227	636	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	peg	gi|49175990|ref|NC_000913.2|_4192227_4191592		thiamine-phosphate diphosphorylase	2.5.1.3	CDS	thiamine-phosphate pyrophosphorylase	2.5.1.3	thiE	
-	4192227	4194122	1896	Thiamin biosynthesis protein ThiC	peg	gi|49175990|ref|NC_000913.2|_4194122_4192227		hydroxymethylpyrimidine synthase		CDS	thiamine biosynthesis protein ThiC		thiC	
-	4194355	4194831	477	Regulator of sigma D	peg	gi|49175990|ref|NC_000913.2|_4194831_4194355		Regulator of sigma D		CDS	regulator of sigma D		rsd	
+	4194926	4195699	774	NADH pyrophosphatase (EC 3.6.1.22)	peg	gi|49175990|ref|NC_000913.2|_4194926_4195699		NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding	3.6.1.22	CDS	NUDIX domain protein			
+	4195739	4196803	1065	Uroporphyrinogen III decarboxylase (EC 4.1.1.37)	peg	gi|49175990|ref|NC_000913.2|_4195739_4196803		uroporphyrinogen decarboxylase (EC 4.1.1.37)	4.1.1.37	CDS	uroporphyrinogen decarboxylase	4.1.1.37	hemE	
+	4196813	4197484	672	Endonuclease V (EC 3.1.21.7)	peg	gi|49175990|ref|NC_000913.2|_4196813_4197484		Endonuclease V (EC 3.1.21.-)	3.1.21.7	CDS	endonuclease V	3.1.21.7	nfi	
+	4197527	4198117	591	FIG01200173: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4197527_4198117		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	4198304	4198576	273	DNA-binding protein HU-alpha	peg	gi|49175990|ref|NC_000913.2|_4198304_4198576		bacterial nucleoid protein HU alpha subunit		CDS	DNA-binding protein HU-alpha		hupA	
+	4198649	4199284	636	FIG00638261: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4198649_4199284		Protein of unknown function (DUF1481).		CDS	conserved hypothetical protein			
-	4199286	4199711	426	Zinc resistance-associated protein	peg	gi|49175990|ref|NC_000913.2|_4199711_4199286		P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein		CDS	zinc resistance-associated protein		zraP	
+	4199949	4201346	1398	Sensor protein of zinc sigma-54-dependent two-component system	peg	gi|49175990|ref|NC_000913.2|_4199949_4201346		His Kinase A (phospho-acceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	2.7.13.3	CDS	sensor protein zraS	2.7.13.3	zraS	
-	4202665	4203954	1290	Phosphoribosylamine--glycine ligase (EC 6.3.4.13)	peg	gi|49175990|ref|NC_000913.2|_4203954_4202665		phosphoribosylamine--glycine ligase (EC 6.3.4.13)	6.3.4.13	CDS	phosphoribosylamine--glycine ligase	6.3.4.13	purD	
+	4201343	4202668	1326	Response regulator of zinc sigma-54-dependent two-component system	peg	gi|49175990|ref|NC_000913.2|_4201343_4202668		Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains		CDS	transcriptional regulatory protein zraR		zraR	
-	4203966	4205555	1590	IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	peg	gi|49175990|ref|NC_000913.2|_4205555_4203966		IMP cyclohydrolase (EC 3.5.4.10)/phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)	3.5.4.10, 2.1.2.3	CDS	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	2.1.2.3	purH	
+	4206188	4207611	1424										
+	4206170	4207711	1542										
+	4208069	4210968	2900							conserved hypothetical protein			
+	4208066	4210989	2924										
+	4211257	4211640	384	FIG00639812: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4211257_4211640		hypothetical protein		CDS	putative stress response protein			
-	4211703	4212146	444	Putative acetyltransferase	peg	gi|49175990|ref|NC_000913.2|_4211951_4211703		Acetyltransferases	2.3.1.-	CDS	conserved hypothetical protein			
+	4212303	4213232	930	Homoserine O-succinyltransferase (EC 2.3.1.46)	peg	gi|49175990|ref|NC_000913.2|_4212303_4213232		homoserine O-succinyltransferase (EC 2.3.1.46)	2.3.1.46	CDS	homoserine O-succinyltransferase	2.3.1.46	metA	
+	4213501	4215102	1602	Malate synthase (EC 2.3.3.9)	peg	gi|49175990|ref|NC_000913.2|_4213501_4215102		malate synthase (EC 2.3.3.9)	2.3.3.9	CDS	malate synthase A	2.3.3.9	aceB	
-	4216433	4216585	153	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4216585_4216433								
+	4215132	4216436	1305	Isocitrate lyase (EC 4.1.3.1)	peg	gi|49175990|ref|NC_000913.2|_4215132_4216436		isocitrate lyase (EC 4.1.3.1)	4.1.3.1	CDS	isocitrate lyase	4.1.3.1	aceA	
-	4218324	4220510	2187	Ankyrin-repeat protein A	peg	gi|49175990|ref|NC_000913.2|_4220510_4218324		ShET2 enterotoxin, N-terminal region.		CDS	shET2 enterotoxin, N-terminal region family protein			
+	4216619	4218355	1737	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)	peg	gi|49175990|ref|NC_000913.2|_4216619_4218355		Isocitrate dehydrogenase kinase/phosphatase	2.7.11.5, 3.1.3.-	CDS	isocitrate dehydrogenase kinase/phosphatase	3.1.3.-	aceK	
-	4220827	4221651	825	Acetate operon repressor	peg	gi|49175990|ref|NC_000913.2|_4221651_4220827		transcriptional regulator, IclR family		CDS	acetate operon repressor		iclR	
+	4221851	4225534	3684	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)	peg	gi|49175990|ref|NC_000913.2|_4221851_4225534		methionine synthase (B12-dependent) (EC 2.1.1.13)	2.1.1.13	CDS	methionine synthase	2.1.1.13	metH	
+	4225754	4227385	1632	Sodium-dependent phosphate transporter	peg	gi|49175990|ref|NC_000913.2|_4225754_4227385		Na/Pi-cotransporter		CDS	sodium-dependent inorganic phosphate (Pi) transporter family protein		PNaS	
-	4227476	4228165	690	Alpha-aspartyl dipeptidase Peptidase E (EC 3.4.13.21)	peg	gi|49175990|ref|NC_000913.2|_4228165_4227476		dipeptidase E (EC:3.4.13.21). Serine peptidase. MEROPS family S51	3.4.13.21	CDS	peptidase E	3.4.13.21	pepE	
+	4228377	4229249	873	Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70)	peg	gi|49175990|ref|NC_000913.2|_4228377_4229249		ribosomal large subunit pseudouridine synthase F (EC 5.4.99.-)	5.4.99.21	CDS	ribosomal large subunit pseudouridine synthase F	5.4.99.21	rluF	
-	4229382	4229654	273	FIG00638401: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4229654_4229382		YjbD family (DUF3811).		CDS	conserved hypothetical protein			
-	4229907	4231256	1350	Aspartokinase (EC 2.7.2.4)	peg	gi|49175990|ref|NC_000913.2|_4231256_4229907		aspartate kinase (EC 2.7.2.4)	2.7.2.4	CDS	aspartate kinase, monofunctional class	2.7.2.4		
+	4231781	4233430	1650	Glucose-6-phosphate isomerase (EC 5.3.1.9)	peg	gi|49175990|ref|NC_000913.2|_4231781_4233430		glucose-6-phosphate isomerase (EC 5.3.1.9)	5.3.1.9	CDS	glucose-6-phosphate isomerase	5.3.1.9	pgi	
+	4233929	4234171	243	YjbE secreted protein	peg	gi|49175990|ref|NC_000913.2|_4233929_4234171		Exopolysaccharide production protein YjbE.		CDS	exopolysaccharide production YjbE family protein			
+	4234285	4234923	639	YjbF outer membrane lipoprotein	peg	gi|49175990|ref|NC_000913.2|_4234285_4234923		Protein of unknown function (DUF2886).		CDS	conserved hypothetical protein			
+	4234920	4235657	738	YjbG polysaccharide synthesis-related protein	peg	gi|49175990|ref|NC_000913.2|_4234995_4235657		Capsule biosynthesis GfcC.		CDS	putative protein			
+	4235657	4237753	2097	YjbH outer membrane lipoprotein	peg	gi|49175990|ref|NC_000913.2|_4235657_4237753		Bacterial putative lipoprotein (DUF940).		CDS	conserved hypothetical protein			
+	4237757	4237918	162	FIG00638774: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4237757_4237918					conserved hypothetical protein			
+	4238348	4238758	411	PsiE protein	peg	gi|49175990|ref|NC_000913.2|_4238348_4238758		Predicted membrane protein		CDS	protein psiE		psiE	
-	4238802	4240277	1476	D-xylose proton-symporter XylE	peg	gi|49175990|ref|NC_000913.2|_4240277_4238802		MFS transporter, sugar porter (SP) family		CDS	MFS transporter, sugar porter family protein			
-	4240649	4241539	891	"Maltose/maltodextrin ABC transporter, permease protein MalG"	peg	gi|49175990|ref|NC_000913.2|_4241539_4240649		maltooligosaccharide ABC transporter membrane protein		CDS	binding--dependent transport system inner membrane component family protein			
-	4241554	4243098	1545	"Maltose/maltodextrin ABC transporter, permease protein MalF"	peg	gi|49175990|ref|NC_000913.2|_4243098_4241554		maltooligosaccharide ABC transporter membrane protein		CDS	binding--dependent transport system inner membrane component family protein			
-	4243252	4244442	1191	"Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE"	peg	gi|49175990|ref|NC_000913.2|_4244442_4243252		maltooligosaccharide-binding protein		CDS	maltose-binding periplasmic protein		malE	
+	4244807	4245922	1116	Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19)	peg	gi|49175990|ref|NC_000913.2|_4244807_4245922		maltooligosaccharide ABC transporter ATP-binding protein	3.6.3.19	CDS	maltose/maltodextrin import ATP-binding protein MalK	3.6.3.19	malK	
+	4245994	4247334	1341	"Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein)"	peg	gi|49175990|ref|NC_000913.2|_4245994_4247334		Maltoporin (phage lambda and maltose receptor)		CDS	maltoporin		lamB	
-	4248472	4248624	153	FIG00638409: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4248624_4248472		hypothetical protein		CDS	conserved hypothetical protein			
+	4247577	4248497	921	Maltose operon periplasmic protein MalM	peg	gi|49175990|ref|NC_000913.2|_4247577_4248497		Maltose operon periplasmic protein precursor (MalM).		CDS	maltose operon periplasmic family protein			
+	4248726	4248920	195	YjbI protein	peg	gi|49175990|ref|NC_000913.2|_4248768_4248920		hypothetical protein		CDS	conserved hypothetical protein			
+	4248978	4250306	1329	YjbI protein	peg	gi|49175990|ref|NC_000913.2|_4248978_4250306		Uncharacterized low-complexity proteins		CDS	pentapeptide repeats family protein			
+	4250529	4251026	498	Chorismate--pyruvate lyase (EC 4.1.3.40)	peg	gi|49175990|ref|NC_000913.2|_4250529_4251026		chorismate lyase (EC 4.1.3.40)	4.1.3.40	CDS	chorismate--pyruvate lyase	4.1.3.40	ubiC	
+	4251039	4251911	873	4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	peg	gi|49175990|ref|NC_000913.2|_4251039_4251911		4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39)	2.5.1.-	CDS	4-hydroxybenzoate polyprenyl transferase	2.5.1.-	ubiA	
-	4252066	4254489	2424	Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	peg	gi|49175990|ref|NC_000913.2|_4254489_4252066		glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	2.3.1.15	CDS	glycerol-3-phosphate O-acyltransferase	2.3.1.15	plsB	
+	4254660	4255028	369	Diacylglycerol kinase (EC 2.7.1.107)	peg	gi|49175990|ref|NC_000913.2|_4254660_4255028		diacylglycerol kinase (EC 2.7.1.107)	2.7.1.107	CDS	diacylglycerol kinase	2.7.1.107	dgkA	
+	4255138	4255746	609	SOS-response repressor and protease LexA (EC 3.4.21.88)	peg	gi|49175990|ref|NC_000913.2|_4255138_4255746		SOS-response transcriptional repressor, LexA	3.4.21.88	CDS	repressor LexA	3.4.21.88	lexA	
+	4255819	4257144	1326	DNA-damage-inducible protein F	peg	gi|49175990|ref|NC_000913.2|_4255819_4257144		putative efflux protein, MATE family		CDS	MATE efflux family protein			
+	4257260	4257469	210	UPF0337 protein yjbJ	peg	gi|49175990|ref|NC_000913.2|_4257260_4257469		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	4257511	4258026	516	Zinc uptake regulation protein ZUR	peg	gi|49175990|ref|NC_000913.2|_4258026_4257511		zinc uptake regulator, Fur family		CDS	ferric uptake regulator family protein			
+	4258344	4258598	255	FIG00639441: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4258344_4258598		hypothetical protein		CDS	conserved hypothetical protein			
+	4258622	4259329	708	FIG00639441: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4258622_4259329		Protein of unknown function (DUF2713).		CDS	conserved hypothetical protein			
+	4259692	4260729	1038	tRNA dihydrouridine synthase A	peg	gi|49175990|ref|NC_000913.2|_4259692_4260729		tRNA-U16,U17-dihydrouridine synthase	1.-	CDS	tRNA dihydrouridine synthase A family protein	1.-.-.-	dusA	
+	4260863	4261105	243	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4260863_4261105		phage shock protein G		CDS	phage shock protein G		pspG	
-	4261271	4262254	984	Quinone oxidoreductase (EC 1.6.5.5)	peg	gi|49175990|ref|NC_000913.2|_4262254_4261271		NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	quinone oxidoreductase 1	1.6.5.5	qorA	
+	4262337	4263752	1416	Replicative DNA helicase (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_4262337_4263752		primary replicative DNA helicase (EC 3.6.1.-)	3.6.4.12	CDS	replicative DNA helicase	3.6.4.12	dnaB	
+	4263805	4264884	1080	Alanine racemase (EC 5.1.1.1) ## biosynthetic	peg	gi|49175990|ref|NC_000913.2|_4263805_4264884		alanine racemase (EC 5.1.1.1)	5.1.1.1	CDS	alanine racemase	5.1.1.1	alr	
+	4265137	4266330	1194	Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	peg	gi|49175990|ref|NC_000913.2|_4265137_4266330		Aspartate/tyrosine/aromatic aminotransferase	2.6.1.57	CDS	aromatic-amino-acid aminotransferase	2.6.1.57	tyrB	
-	4266832	4267074	243	FIG00638711: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4267074_4266832		hypothetical protein		CDS				
-	4267421	4267573	153	FIG00638217: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4267573_4267421					hypothetical protein			
+	4267437	4268150	714	NMN phosphatase (EC 3.1.3.5); Class B acid phosphatase precursor (EC 3.1.3.2)	peg	gi|49175990|ref|NC_000913.2|_4267626_4268150		acid phosphatase (EC 3.1.3.2)	3.1.3.2	CDS	class B acid phosphatase	3.1.3.2	aphA	
+	4268261	4268677	417	FIG004064: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4268261_4268677		secondary thiamine-phosphate synthase enzyme		CDS	conserved hypothetical protein			
+	4268681	4269037	357	Protein yjbR	peg	gi|49175990|ref|NC_000913.2|_4268681_4269037		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	4269072	4271894	2823	Excinuclease ABC subunit A	peg	gi|49175990|ref|NC_000913.2|_4271894_4269072		Excinuclease ABC subunit A		CDS	excinuclease ABC subunit A	3.1.25.-	uvrA	
+	4272148	4272684	537	Single-stranded DNA-binding protein	peg	gi|49175990|ref|NC_000913.2|_4272148_4272684		single-strand binding protein		CDS	single-stranded DNA-binding protein		ssb	
-	4272783	4273064	282	YjcB protein	peg	gi|49175990|ref|NC_000913.2|_4273064_4272783		hypothetical protein		CDS	putative transmembrane protein			
+	4273494	4275080	1587	FIG00638940: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4273494_4275080		Predicted signal transduction protein containing sensor and EAL domains		CDS	conserved hypothetical protein			
-	4275083	4275406	324	Regulatory protein SoxS	peg	gi|49175990|ref|NC_000913.2|_4275406_4275083		transcriptional regulator, AraC family		CDS	regulatory protein soxS		soxS	
+	4275492	4275956	465	Redox-sensitive transcriptional activator SoxR	peg	gi|49175990|ref|NC_000913.2|_4275492_4275956		redox-sensitive transcriptional activator SoxR		CDS	redox-sensitive transcriptional activator SoxR		soxR	
-	4276247	4276465	219	FIG00638027: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4276465_4276247					conserved hypothetical protein			
+	4276502	4277851	1350	Guanine-hypoxanthine permease	peg	gi|49175990|ref|NC_000913.2|_4276502_4277851		Permeases		CDS	putative permease yjcD			
+	4278003	4279652	1650	"Putative Na(+)/H(+) exchanger protein, CPA1 family precursor"	peg	gi|49175990|ref|NC_000913.2|_4278003_4279652		sodium/proton antiporter, CPA1 family (TC 2.A.36)		CDS	na+/H+ antiporter			
-	4279806	4281098	1293	FIG00638091: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4281098_4279806		Uncharacterized low-complexity proteins		CDS	pentapeptide repeats family protein			
-	4281276	4282925	1650	Acetate permease ActP (cation/acetate symporter)	peg	gi|49175990|ref|NC_000913.2|_4282925_4281276		cation/acetate symporter ActP		CDS	cation/acetate symporter ActP		actP	
-	4282922	4283236	315	"Putative membrane protein, clustering with ActP"	peg	gi|49175990|ref|NC_000913.2|_4283236_4282922		Predicted membrane protein		CDS	inner membrane protein yjcH		yjcH	
-	4283436	4285394	1959	Acetyl-coenzyme A synthetase (EC 6.2.1.1)	peg	gi|49175990|ref|NC_000913.2|_4285394_4283436		acetyl-coenzyme A synthetase (EC 6.2.1.1)	6.2.1.1	CDS	acetate--CoA ligase	6.2.1.1	acs	
+	4285787	4287223	1437	Cytochrome c552 precursor (EC 1.7.2.2)	peg	gi|49175990|ref|NC_000913.2|_4285787_4287223		respiratory nitrite reductase (cytochrome; ammonia-forming) precursor (EC 1.7.2.2)	1.7.2.2	CDS	cytochrome c-552	1.7.2.2	nrfA	
+	4287268	4287834	567	Cytochrome c-type protein NrfB precursor	peg	gi|49175990|ref|NC_000913.2|_4287268_4287834		respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex subunit NrfB precursor		CDS	cytochrome c nitrite reductase, pentaheme subunit	1.7.2.2	nrfB	
+	4287831	4288502	672	NrfC protein	peg	gi|49175990|ref|NC_000913.2|_4287831_4288502		respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex Fe-S cluster containing subunit NrfC		CDS	cytochrome c nitrite reductase, Fe-S protein	1.7.2.2	nrfC	
+	4288499	4289455	957	NrfD protein	peg	gi|49175990|ref|NC_000913.2|_4288499_4289455		respiratory nitrite reductase specific menaquinol--cytochrome-c reductase complex subunit NrfD (EC 1.10.2.-)		CDS	cytochrome c nitrite reductase, NrfD subunit	1.7.2.2	nrfD	
+	4289571	4291193	1623	"Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly"	peg	gi|49175990|ref|NC_000913.2|_4289571_4291193		respiratory nitrite reductase specific cytochrome c biogenesis protein NrfE		CDS	cytochrome c-type biogenesis protein CcmF		ccmF	
+	4291186	4291569	384	"Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly"	peg	gi|49175990|ref|NC_000913.2|_4291186_4291569		respiratory nitrite reductase specific cytochrome c biogenesis protein NrfF		CDS	cytochrome C biogenesis family protein			
+	4291566	4292162	597	"Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly"	peg	gi|49175990|ref|NC_000913.2|_4291566_4292162		respiratory nitrite reductase specific cytochrome c biogenesis protein NrfG		CDS	TPR repeat family protein			
+	4292504	4293817	1314	Glutamate-aspartate carrier protein	peg	gi|49175990|ref|NC_000913.2|_4292504_4293817		Na+/H+-dicarboxylate symporters		CDS	proton glutamate symport protein		gltP	
-	4294459	4295148	690	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_4295148_4294459		FOG: TPR repeat, SEL1 subfamily		CDS	conserved hypothetical protein			
-	4295242	4297389	2148	Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing	peg	gi|49175990|ref|NC_000913.2|_4296921_4295242		formate dehydrogenase alpha subunit (EC 1.2.1.2)	1.2.1.2	CDS	formate dehydrogenase, alpha subunit	1.2.1.2		
-	4296970	4297389	420	Formate dehydrogenase H (EC 1.2.1.2) @ selenocysteine-containing	peg	gi|49175990|ref|NC_000913.2|_4297389_4296970		Uncharacterized anaerobic dehydrogenase	1.2.1.2	CDS	molybdopterin oxidoreductase family protein			
-	4297587	4299053	1467	Outer membrane component of tripartite multidrug resistance system	peg	gi|49175990|ref|NC_000913.2|_4299053_4297587		efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family		CDS	multidrug resistance outer membrane protein mdtP		mdtP	
-	4299050	4301101	2052	Membrane fusion component of tripartite multidrug resistance system	peg	gi|49175990|ref|NC_000913.2|_4301101_4299050		Predicted membrane protein		CDS	fusaric acid resistance family protein			
-	4301101	4302132	1032	Inner membrane component of tripartite multidrug resistance system	peg	gi|49175990|ref|NC_000913.2|_4302132_4301101		efflux pump membrane protein (multidrug resistance protein A)		CDS	efflux transporter, RND family, MFP subunit			
-	4302151	4302426	276	FIG00637930: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4302426_4302151		hypothetical protein		CDS	putative membrane protein			
-	4302635	4304620	1986	FIG00638848: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4304620_4302635		Alkyl sulfatase and related hydrolases		CDS	metallo-beta-lactamase superfamily protein			
-	4304893	4305822	930	D-allose kinase (EC 2.7.1.55)	peg	gi|49175990|ref|NC_000913.2|_4305822_4304893		D-allose kinase (EC 2.7.1.55)	2.7.1.55	CDS	D-allose kinase	2.7.1.55	alsK	
-	4305806	4306501	696	"D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-), row_id 1016"	peg	gi|49175990|ref|NC_000913.2|_4306501_4305806		D-allulose 6-phosphate 3-epimerase (EC 5.1.3.-)		CDS	D-allulose-6-phosphate 3-epimerase	5.1.3.-	alsE	
-	4306512	4307492	981	"D-allose ABC transporter, permease component"	peg	gi|49175990|ref|NC_000913.2|_4307492_4306512		allose ABC transporter membrane protein		CDS	branched-chain amino acid transport system / permease component family protein			
-	4307471	4309003	1533	"D-allose ABC transporter, ATPase component"	peg	gi|49175990|ref|NC_000913.2|_4309003_4307471		allose ABC transporter ATP-binding protein		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
-	4309130	4310065	936	"D-allose ABC transporter, substrate-binding component"	peg	gi|49175990|ref|NC_000913.2|_4310065_4309130		allose-binding protein		CDS	D-allose-binding periplasmic protein		alsB	
-	4310124	4311014	891	"Transcriptional regulator of D-allose utilization, RpiR family"	peg	gi|49175990|ref|NC_000913.2|_4311014_4310124		transcriptional regulator, RpiR family		CDS	HTH-type transcriptional regulator rpiR		rpiR	
+	4311373	4311822	450	D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6)	peg	gi|49175990|ref|NC_000913.2|_4311373_4311822		ribose-5-phosphate isomerase (EC 5.3.1.6)	5.3.1.6	CDS	ribose 5-phosphate isomerase B	5.3.1.6	rpiB	
+	4311891	4312220	330	FIG00638130: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4311891_4312220		hypothetical protein		CDS	conserved hypothetical protein			
-	4312367	4313125	759	Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein	peg	gi|49175990|ref|NC_000913.2|_4313125_4312367		5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase (EC 3.1.4.-)		CDS	phosphonate metabolism protein PhnP		phnP	
-	4313127	4313561	435	PhnO protein	peg	gi|49175990|ref|NC_000913.2|_4313561_4313127		Acetyltransferase, GNAT family	2.3.1.-	CDS	acetyltransferase family protein			
-	4313548	4314105	558	ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)	peg	gi|49175990|ref|NC_000913.2|_4314105_4313548		phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	2.7.4.23	CDS	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN		phnN	
-	4314105	4315241	1137	Metal-dependent hydrolase involved in phosphonate metabolism	peg	gi|49175990|ref|NC_000913.2|_4315241_4314105		ribophosphonate triphosphate hydrolase (EC 3.-.-.-)		CDS	phosphonate metabolism protein PhnM		phnM	
-	4315238	4315918	681	Phosphonates transport ATP-binding protein PhnL	peg	gi|49175990|ref|NC_000913.2|_4315918_4315238		methylphosphonate degradation complex, subunit phnL		CDS	phosphonate C-P lyase system protein PhnL		phnL	
-	4316029	4316787	759	Phosphonates transport ATP-binding protein PhnK	peg	gi|49175990|ref|NC_000913.2|_4316787_4316029		phosphonate C-P lyase system protein PhnK		CDS	phosphonate C-P lyase system protein PhnK		phnK	
-	4316784	4317629	846	PhnJ protein	peg	gi|49175990|ref|NC_000913.2|_4317629_4316784		carbon-phosphorous lyase (EC 4.-.-.-)		CDS	protein phnJ		phnJ	
-	4317622	4318686	1065	PhnI protein	peg	gi|49175990|ref|NC_000913.2|_4318686_4317622		methylphosphonate degradation complex, subunit phnI		CDS	bacterial phosphonate metabolism family protein			
-	4318686	4319270	585	PhnH protein	peg	gi|49175990|ref|NC_000913.2|_4319270_4318686		methylphosphonate degradation complex, subunit phnH		CDS	phosphonate C-P lyase system protein PhnH		phnH	
-	4319267	4319719	453	PhnG protein	peg	gi|49175990|ref|NC_000913.2|_4319719_4319267		methylphosphonate degradation complex, subunit phnG		CDS	phosphonate C-P lyase system protein PhnG		phnG	
-	4319720	4320445	726	Transcriptional regulator PhnF	peg	gi|49175990|ref|NC_000913.2|_4320445_4319720		transcriptional regulator, GntR family		CDS	phosphonate metabolism transcriptional regulator PhnF		phnF	
-	4320466	4320834	369	Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	peg	gi|49175990|ref|NC_000913.2|_4320687_4320466		ABC-type phosphate/phosphonate transport system, permease component		CDS	binding--dependent transport system inner membrane component family protein			
-	4320684	4321304	621	Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)	peg	gi|49175990|ref|NC_000913.2|_4321304_4320684					putative phnE, subunit of alkylphosphonate ABC transporter			
-	4321359	4322375	1017	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)	peg	gi|49175990|ref|NC_000913.2|_4322375_4321359		phosphonate ABC transporter, periplasmic phosphonate binding protein		CDS	phosphonate ABC transporter, periplasmic phosphonate binding protein		phnD	
-	4322400	4323188	789	Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1)	peg	gi|49175990|ref|NC_000913.2|_4323188_4322400		phosphonate ABC transporter, ATP-binding protein	3.6.3.28	CDS	phosphonate ABC transporter, ATP-binding protein	3.6.3.28	phnC	
-	4323321	4323764	444	PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein	peg	gi|49175990|ref|NC_000913.2|_4323764_4323321		Uncharacterized protein conserved in bacteria		CDS	protein phnB		phnB	
-	4324422	4324835	414	Alkylphosphonate utilization operon protein PhnA	peg	gi|49175990|ref|NC_000913.2|_4324835_4324422		alkylphosphonate utilization operon protein PhnA	3.11.1.2	CDS	phnA family protein			
+	4325158	4327386	2229	Putative vimentin	peg	gi|49175990|ref|NC_000913.2|_4325158_4327386		Dynamin family.		CDS	50S ribosome-binding GTPase family protein			
+	4327383	4328261	879	Methyl-accepting chemotaxis protein	peg	gi|49175990|ref|NC_000913.2|_4327383_4328261		YjcZ-like protein.		CDS	yjcZ-like family protein			
+	4328525	4330027	1503	L-Proline/Glycine betaine transporter ProP	peg	gi|49175990|ref|NC_000913.2|_4328525_4330027		metabolite-proton symporter		CDS	proline/betaine transporter		proP	
-	4330204	4331304	1101	Sensor protein basS/pmrB (EC 2.7.3.-)	peg	gi|49175990|ref|NC_000913.2|_4331304_4330204		Signal transduction histidine kinase	2.7.13.3	CDS	sensor protein BasS	2.7.13.3	basS	
-	4331305	4331973	669	Transcriptional regulatory protein basR/pmrA	peg	gi|49175990|ref|NC_000913.2|_4331973_4331305		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory protein BasR		basR	
-	4331970	4333613	1644	Phosphoethanolamine transferase EptA specific for the 1 phosphate group of core-lipid A	peg	gi|49175990|ref|NC_000913.2|_4333613_4331970		Predicted membrane-associated, metal-dependent hydrolase		CDS	phosphoethanolamine transferase eptA	2.7.-.-	eptA	
-	4333717	4335054	1338	Arginine/agmatine antiporter	peg	gi|49175990|ref|NC_000913.2|_4335054_4333717		arginine:agmatine antiporter, APA family (TC 2.A.3.2.5)		CDS	arginine/agmatine antiporter		adiC	
-	4335191	4335952	762	Transcriptional regulator of catabolic arginine decarboxylase (adiA)	peg	gi|49175990|ref|NC_000913.2|_4335952_4335191		transcriptional regulator, AraC family		CDS	HTH-type transcriptional regulator AdiY		adiY	
-	4336277	4338547	2271	"Arginine decarboxylase, catabolic (EC 4.1.1.19)"	peg	gi|49175990|ref|NC_000913.2|_4338547_4336277		Arginine/lysine/ornithine decarboxylases	4.1.1.19	CDS	biodegradative arginine decarboxylase	4.1.1.19	adiA	
-	4338743	4339651	909	Melibiose operon regulatory protein	peg	gi|49175990|ref|NC_000913.2|_4339651_4338743		transcriptional regulator, AraC family		CDS	melibiose operon regulatory protein		melR	
+	4339934	4341289	1356	Alpha-galactosidase (EC 3.2.1.22)	peg	gi|49175990|ref|NC_000913.2|_4339934_4341289		alpha-galactosidase (EC:3.2.1.22)	3.2.1.22	CDS	alpha-galactosidase	3.2.1.22	melA	
+	4341404	4342813	1410	"Melibiose carrier protein, Na+/melibiose symporter"	peg	gi|49175990|ref|NC_000913.2|_4341479_4342813		sugar (Glycoside-Pentoside-Hexuronide) transporter		CDS	melibiose carrier protein		melB	
-	4342952	4343581	630	Inner membrane protein yjdF	peg	gi|49175990|ref|NC_000913.2|_4343581_4342952		Predicted membrane protein		CDS	inner membrane protein yjdF		yjdF	
-	4343703	4345349	1647	"Fumarate hydratase class I, anaerobic (EC 4.2.1.2)"	peg	gi|49175990|ref|NC_000913.2|_4345349_4343703		fumarase, class I, homodimeric (EC 4.2.1.2)	4.2.1.2	CDS	fumarate hydratase class I, anaerobic	4.2.1.2	fumB	
-	4345427	4346767	1341	C4-dicarboxylate transporter DcuB	peg	gi|49175990|ref|NC_000913.2|_4346767_4345427		anaerobic c4-dicarboxylate membrane transporter family protein		CDS	anaerobic C4-dicarboxylate transporter DcuB		dcuB	
-	4347338	4348057	720	Fumarate respiration transcriptional regulator DcuR	peg	gi|49175990|ref|NC_000913.2|_4348057_4347338		Response regulator of citrate/malate metabolism		CDS	transcriptional regulatory protein dcuR		dcuR	
-	4348054	4349685	1632	Fumarate respiration sensor kinase protein DcuS	peg	gi|49175990|ref|NC_000913.2|_4349685_4348054		Signal transduction histidine kinase regulating citrate/malate metabolism	2.7.13.3	CDS	sensor histidine kinase DcuS	2.7.13.3	dcuS	
+	4349866	4350096	231	FIG00638676: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4349866_4350096		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
+	4350108	4350380	273	hypothetical protein YjdJ	peg	gi|49175990|ref|NC_000913.2|_4350108_4350380		Predicted acetyltransferase		CDS	acetyltransferase family protein			
+	4350607	4350903	297	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4350697_4350903		Protein of unknown function (DUF2622).		CDS	conserved hypothetical protein			
+	4350931	4351104	174	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4350931_4351104		Protein of unknown function (DUF2566).		CDS	conserved hypothetical protein			
-	4351223	4352740	1518	Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)	peg	gi|49175990|ref|NC_000913.2|_4352740_4351223		lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	lysine--tRNA ligase	6.1.1.6	lysS	
-	4352977	4354434	1458	Di/tripeptide permease YjdL	peg	gi|49175990|ref|NC_000913.2|_4354434_4352977		amino acid/peptide transporter (Peptide:H+ symporter), bacterial		CDS	dipeptide permease D		dtpD	
-	4354493	4356640	2148	"Lysine decarboxylase, inducible (EC 4.1.1.18)"	peg	gi|49175990|ref|NC_000913.2|_4356640_4354493		L-lysine decarboxylase (EC 4.1.1.18)	4.1.1.18	CDS	lysine decarboxylase, inducible	4.1.1.18	cadA	
-	4356720	4358054	1335	Lysine/cadaverine antiporter membrane protein CadB	peg	gi|49175990|ref|NC_000913.2|_4358054_4356720		cadaverine:lysine antiporter, APA family (TC 2.A.3.2.2)		CDS	transporter, basic amino acid/polyamine antiporter family protein			
-	4358419	4359957	1539	Transcriptional activator of cad operon	peg	gi|49175990|ref|NC_000913.2|_4359957_4358419		lysine decarboxylase transcriptional regulator, CadC		CDS	transcriptional activator CadC		cadC	
-	4360756	4361331	576	"Transcriptional regulator, TetR family"	peg	gi|49175990|ref|NC_000913.2|_4361331_4360756		transcriptional regulator, TetR family		CDS	HTH-type transcriptional regulator yjdC		yjdC	
-	4361368	4363065	1698	"Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)"	peg	gi|49175990|ref|NC_000913.2|_4363065_4361368		Thiol:disulfide interchange protein	1.8.1.8	CDS	thiol:disulfide interchange protein DsbD	1.8.1.8	dsbD	
-	4363041	4363379	339	Periplasmic divalent cation tolerance protein CutA	peg	gi|49175990|ref|NC_000913.2|_4363379_4363041		Uncharacterized protein involved in tolerance to divalent cations		CDS	divalent-cation tolerance protein CutA		cutA	
-	4363495	4364796	1302	C4-dicarboxylate transporter DcuA	peg	gi|49175990|ref|NC_000913.2|_4364703_4363495		anaerobic c4-dicarboxylate membrane transporter family protein		CDS	anaerobic C4-dicarboxylate transporter DcuA		dcuA	
-	4364914	4366350	1437	Aspartate ammonia-lyase (EC 4.3.1.1)	peg	gi|49175990|ref|NC_000913.2|_4366350_4364914		aspartate ammonia-lyase	4.3.1.1	CDS	aspartate ammonia-lyase	4.3.1.1	aspA	
+	4366687	4367163	477	FxsA protein	peg	gi|49175990|ref|NC_000913.2|_4366687_4367163		Protein affecting phage T7 exclusion by the F plasmid		CDS	conserved hypothetical protein			
-	4367179	4368435	1257	Putative permease	peg	gi|49175990|ref|NC_000913.2|_4368435_4367179		amino acid exporter, AAE family (TC 2.A.3.13)		CDS	inner membrane protein yjeH		yjeH	
+	4368711	4369004	294	Heat shock protein 60 family co-chaperone GroES	peg	gi|49175990|ref|NC_000913.2|_4368711_4369004		Co-chaperonin GroES (HSP10)		CDS	10 kDa chaperonin		groS	
+	4369048	4370694	1647	Heat shock protein 60 family chaperone GroEL	peg	gi|49175990|ref|NC_000913.2|_4369048_4370694		chaperonin GroL		CDS	chaperonin GroL		groL	
+	4370832	4371185	354	probable membrane protein yjeI	peg	gi|49175990|ref|NC_000913.2|_4370832_4371185		Domain of unknown function (DUF4156).		CDS	conserved hypothetical protein			
-	4371388	4372257	870	FIG00733146: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4372257_4371388		hypothetical protein		CDS	putative predicted protein			
-	4372652	4373680	1029	"Lysyl-lysine 2,3-aminomutase"	peg	gi|49175990|ref|NC_000913.2|_4373614_4372652		L-lysine 2,3-aminomutase (EC 5.4.3.2)		CDS	kamA family protein			
+	4373722	4374288	567	Translation elongation factor P	peg	gi|49175990|ref|NC_000913.2|_4373722_4374288		translation elongation factor P (EF-P)		CDS	translation elongation factor P		efp	
-	4375212	4375745	534	Outer membrane lipoprotein Blc	peg	gi|49175990|ref|NC_000913.2|_4375745_4375212		Bacterial lipocalin		CDS	outer membrane lipoprotein blc		blc	
+	4374898	4375215	318	Quaternary ammonium compound-resistance protein SugE	peg	gi|49175990|ref|NC_000913.2|_4374898_4375215		Membrane transporters of cations and cationic drugs		CDS	quaternary ammonium compound-resistance protein sugE		sugE	
-	4375834	4376967	1134	Beta-lactamase (EC 3.5.2.6)	peg	gi|49175990|ref|NC_000913.2|_4376967_4375834		Beta-lactamase class C and other penicillin binding proteins	3.5.2.6	CDS	beta-lactamase	3.5.2.6	ampC	
-	4377030	4377389	360	Fumarate reductase subunit D	peg	gi|49175990|ref|NC_000913.2|_4377389_4377030		succinate dehydrogenase subunit D (EC 1.3.5.1)		CDS	fumarate reductase subunit D		frdD	
-	4377400	4377795	396	Fumarate reductase subunit C	peg	gi|49175990|ref|NC_000913.2|_4377795_4377400		Fumarate reductase subunit C		CDS	fumarate reductase subunit C		frdC	
-	4377806	4378540	735	Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)	peg	gi|49175990|ref|NC_000913.2|_4378540_4377806		succinate dehydrogenase subunit B (EC 1.3.5.1)	1.3.99.1	CDS	fumarate reductase iron-sulfur subunit	1.3.99.1	frdB	
-	4378533	4380341	1809	Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)	peg	gi|49175990|ref|NC_000913.2|_4380341_4378533		succinate dehydrogenase subunit A (EC 1.3.5.1)	1.3.99.1	CDS	fumarate reductase, flavoprotein subunit	1.3.99.1	frdA	
+	4380666	4381643	978	Translation elongation factor P Lys34:lysine transferase	peg	gi|49175990|ref|NC_000913.2|_4380666_4381643		EF-P lysine aminoacylase GenX	6.1.1.6	CDS	EF-P lysine aminoacylase GenX			
+	4381907	4383364	1458	Putative amino acid permease	peg	gi|49175990|ref|NC_000913.2|_4381907_4383364		amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	inner membrane transporter yjeM		yjeM	
+	4383416	4383730	315	FIG00639484: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4383416_4383730		hypothetical protein		CDS	conserved hypothetical protein			
+	4383727	4384041	315	FIG00639836: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4383727_4384041		Protein of unknown function (DUF2645).		CDS	inner membrane protein yjeO		yjeO	
-	4384070	4387393	3324	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel	peg	gi|49175990|ref|NC_000913.2|_4387393_4384070		Small-conductance mechanosensitive channel		CDS	mechanosensitive ion channel family protein			
-	4387415	4388383	969	Phosphatidylserine decarboxylase (EC 4.1.1.65)	peg	gi|49175990|ref|NC_000913.2|_4388383_4387415		phosphatidylserine decarboxylase precursor	4.1.1.65	CDS	phosphatidylserine decarboxylase	4.1.1.65	psd	
-	4388480	4389532	1053	Ribosome small subunit-stimulated GTPase EngC	peg	gi|49175990|ref|NC_000913.2|_4389532_4388480		ribosome small subunit-dependent GTPase A	3.6.1.-	CDS	ribosome small subunit-dependent GTPase A	3.6.-.-	rsgA	
+	4389627	4390172	546	3'-to-5' oligoribonuclease (orn)	peg	gi|49175990|ref|NC_000913.2|_4389627_4390172		Oligoribonuclease (3'->5' exoribonuclease)	3.1.-	CDS	oligoribonuclease	3.1.-.-	orn	
-	4390951	4392090	1140	Epoxyqueuosine (oQ) reductase QueG	peg	gi|49175990|ref|NC_000913.2|_4392090_4390951		iron-sulfur cluster binding protein, putative		CDS	putative iron-sulfur cluster-binding protein			
+	4392104	4393636	1533	NAD(P)HX epimerase / NAD(P)HX dehydratase	peg	gi|49175990|ref|NC_000913.2|_4392104_4393636		yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region		CDS	conserved hypothetical protein			
+	4393608	4394069	462	"ATPase YjeE, predicted to have essential role in cell wall biosynthesis"	peg	gi|49175990|ref|NC_000913.2|_4393611_4394069		ATPase, YjeE family		CDS	conserved hypothetical protein			
+	4394088	4395425	1338	N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)	peg	gi|49175990|ref|NC_000913.2|_4394088_4395425		N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	N-acetylmuramoyl-L-alanine amidase AmiB	3.5.1.28	amiB	
+	4395435	4397282	1848	DNA mismatch repair protein MutL	peg	gi|49175990|ref|NC_000913.2|_4395435_4397282		DNA mismatch repair protein MutL		CDS	DNA mismatch repair protein mutL		mutL	
+	4397275	4398225	951	tRNA dimethylallyltransferase (EC 2.5.1.75)	peg	gi|49175990|ref|NC_000913.2|_4397320_4398225		tRNA dimethylallyltransferase	2.5.1.75	CDS	tRNA dimethylallyltransferase	2.5.1.75	miaA	
+	4398311	4398619	309	RNA-binding protein Hfq	peg	gi|49175990|ref|NC_000913.2|_4398311_4398619		RNA-binding protein Hfq		CDS	RNA chaperone Hfq		hfq	
+	4398695	4399975	1281	GTP-binding protein HflX	peg	gi|49175990|ref|NC_000913.2|_4398695_4399975		GTP-binding protein HflX (EC 3.1.5.-)		CDS	GTP-binding protein HflX		hflX	
+	4400061	4401320	1260	HflK protein	peg	gi|49175990|ref|NC_000913.2|_4400061_4401320		protease FtsH subunit HflK	3.4.-	CDS	hflK protein		hflK	
+	4401323	4402327	1005	HflC protein	peg	gi|49175990|ref|NC_000913.2|_4401323_4402327		protease FtsH subunit HflC	3.4.-	CDS	hflC protein		hflC	
+	4402409	4402606	198	Putative inner membrane protein YjeT (clustered with HflC)	peg	gi|49175990|ref|NC_000913.2|_4402409_4402606		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	4402710	4404008	1299	Adenylosuccinate synthetase (EC 6.3.4.4)	peg	gi|49175990|ref|NC_000913.2|_4402710_4404008		Adenylosuccinate synthetase (EC 6.3.4.4)	6.3.4.4	CDS	adenylosuccinate synthase	6.3.4.4	purA	
+	4404213	4404638	426	Nitrite-sensitive transcriptional repressor NsrR	peg	gi|49175990|ref|NC_000913.2|_4404213_4404638		transcriptional regulator, BadM/Rrf2 family		CDS	HTH-type transcriptional repressor nsrR		nsrR	
+	4404677	4407118	2442	3'-to-5' exoribonuclease RNase R	peg	gi|49175990|ref|NC_000913.2|_4404677_4407118		RNAse R (EC 3.1.-.-)	3.1.-	CDS	ribonuclease R	3.1.-.-	rnr	
+	4407298	4408029	732	23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)	peg	gi|49175990|ref|NC_000913.2|_4407298_4408029		23S rRNA Gm-2251 2'-O-methyltransferase (EC 2.1.1.185)	2.1.1.185	CDS	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB	2.1.1.-	rlmB	
+	4408156	4408557	402	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4408156_4408557		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	4408576	4409274	699	PspA/IM30 family protein	peg	gi|49175990|ref|NC_000913.2|_4408576_4409274		phage shock protein A (PspA) family protein		CDS	pspA/IM30 family protein			
+	4409325	4409984	660	FIG00638518: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4409325_4409984		Protein of unknown function (DUF2491).		CDS	conserved hypothetical protein			
+	4410002	4410400	399	Membrane protein with DUF350 domain	peg	gi|49175990|ref|NC_000913.2|_4410002_4410400		Predicted membrane protein		CDS	conserved hypothetical protein			
+	4410410	4411048	639	FIG00637977: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4410410_4411048		Predicted integral membrane protein		CDS	conserved hypothetical protein			
+	4411051	4412214	1164	"Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1"	peg	gi|49175990|ref|NC_000913.2|_4411051_4412214		Glutathionylspermidine synthase		CDS	glutathionylspermidine synthase preATP-grasp family protein			
+	4412298	4413923	1626	Acyl-CoA dehydrogenase (EC 1.3.99.3)	peg	gi|49175990|ref|NC_000913.2|_4412298_4413923		Acyl-CoA dehydrogenases		CDS	putative acyl-CoA dehydrogenase AidB			
-	4414040	4414327	288	Putative uncharacterized protein YjfN	peg	gi|49175990|ref|NC_000913.2|_4414327_4414040		Protein of unknown function (DUF1471).		CDS	conserved hypothetical protein			
-	4414464	4414793	330	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_4414793_4414464		Protein of unknown function (DUF1471).		CDS	conserved hypothetical protein			
-	4415721	4416476	756	"Ascorbate utilization transcriptional regulator UlaR, HTH-type"	peg	gi|49175990|ref|NC_000913.2|_4416476_4415721		transcriptional regulator, DeoR family		CDS	HTH-type transcriptional regulator ulaR		ulaR	
+	4414975	4415724	750	YjfP protein	peg	gi|49175990|ref|NC_000913.2|_4414975_4415724		Hydrolases of the alpha/beta superfamily		CDS	esterase yjfP	3.1.-.-	yjfP	
-	4416584	4417648	1065	Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G)	peg	gi|49175990|ref|NC_000913.2|_4417648_4416584		L-ascorbate 6-phosphate lactonase (EC 3.1.1.-)	3.1.1.-	CDS	metal-dependent hydrolase			
+	4418003	4419400	1398	"Ascorbate-specific PTS system, EIIC component"	peg	gi|49175990|ref|NC_000913.2|_4418003_4419400		PTS system ascorbate-specific IIC component, L-Asc family (TC 4.A.7.1.1)		CDS	ascorbate-specific permease IIC component ulaA		ulaA	
+	4419416	4419721	306	"Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_4419416_4419721		PTS system ascorbate-specific IIB component, L-Asc family (TC 4.A.7.1.1)	2.7.1.69	CDS	ascorbate-specific phosphotransferase enzyme IIB component	2.7.1.69	ulaB	
+	4419731	4420195	465	"Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)"	peg	gi|49175990|ref|NC_000913.2|_4419731_4420195		PTS system ascorbate-specific IIA component, L-Asc family (TC 4.A.7.1.1)	2.7.1.69	CDS	ascorbate-specific phosphotransferase enzyme IIA component	2.7.1.-	ulaC	
+	4420209	4420859	651	3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D)	peg	gi|49175990|ref|NC_000913.2|_4420209_4420859		3-keto-L-gulonate 6-phosphate decarboxylase (EC 4.1.1.85)	4.1.1.85	CDS	3-keto-L-gulonate-6-phosphate decarboxylase ulaD	4.1.1.85	ulaD	
+	4420869	4421723	855	L-ribulose-5-phosphate 3-epimerase UlaE (EC 5.1.3.22) (L-ascorbate utilization protein E)	peg	gi|49175990|ref|NC_000913.2|_4420869_4421723		L-xylulose 5-phosphate 3-epimerase (EC 5.1.3.22)	5.1.3.22	CDS	L-ribulose-5-phosphate 3-epimerase ulaE	5.1.3.22	ulaE	
+	4421723	4422409	687	L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F)	peg	gi|49175990|ref|NC_000913.2|_4421723_4422409		L-ribulose 5-phosphate 4-epimerase (EC 5.1.3.4)	5.1.3.4	CDS	L-ribulose-5-phosphate 4-epimerase UlaF	5.1.3.4	ulaF	
-	4422539	4422814	276	UPF0379 protein yjfY precursor	peg	gi|49175990|ref|NC_000913.2|_4422814_4422539		Protein of unknown function (DUF1471).		CDS	conserved hypothetical protein			
+	4423141	4423536	396	SSU ribosomal protein S6p	peg	gi|49175990|ref|NC_000913.2|_4423141_4423536		SSU ribosomal protein S6P		CDS	ribosomal protein S6		rpsF	
+	4423543	4423857	315				restart primosome assembly protein PriB		CDS				
+	4423862	4424089	228	"SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent"	peg	gi|49175990|ref|NC_000913.2|_4423862_4424089		SSU ribosomal protein S18P		CDS	ribosomal protein S18		rpsR	
+	4424131	4424580	450	LSU ribosomal protein L9p	peg	gi|49175990|ref|NC_000913.2|_4424131_4424580		LSU ribosomal protein L9P		CDS	ribosomal protein L9		rplI	
-	4424651	4425445	795	Uncharacterized protein yjfZ	peg	gi|49175990|ref|NC_000913.2|_4425445_4424651		Protein of unknown function (DUF2686).		CDS	conserved hypothetical protein			
-	4426102	4426740	639	Putative cell envelope opacity-associated protein A	peg	gi|49175990|ref|NC_000913.2|_4426740_4426102		Cell envelope opacity-associated protein A		CDS	opacity-associated A N-terminal motif family protein			
+	4425792	4426118	327	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4425888_4426118		hypothetical protein		CDS	conserved hypothetical protein			
+	4426958	4427578	621	FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_4426958_4427578		FKBP-type peptidyl-prolyl cis-trans isomerases 1	5.2.1.8	CDS	FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase	5.2.1.8	fklB	
+	4427887	4429299	1413	D-serine/D-alanine/glycine transporter	peg	gi|49175990|ref|NC_000913.2|_4427887_4429299		D-serine/D-alanine/glycine:proton symporter, AAT family (TC 2.A.3.1.7)		CDS	D-serine/D-alanine/glycine transporter		cycA	
-	4429344	4430006	663	Nitric oxide-dependent regulator DnrN or NorA	peg	gi|49175990|ref|NC_000913.2|_4430006_4429344		iron-sulfur cluster repair di-iron protein		CDS	iron-sulfur cluster repair di-iron protein		ric	
-	4430114	4431079	966	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_4431079_4430114		Permeases of the drug/metabolite transporter (DMT) superfamily		CDS	inner membrane protein ytfF		ytfF	
-	4431187	4432047	861	NADPH:quinone oxidoreductase 2	peg	gi|49175990|ref|NC_000913.2|_4432047_4431187		Predicted nucleoside-diphosphate-sugar epimerases		CDS	quinone oxidoreductase 2	1.6.5.2	qorB	
+	4432136	4432516	381	Redox-sensing transcriptional regulator QorR	peg	gi|49175990|ref|NC_000913.2|_4432136_4432516		transcriptional regulator, HxlR family		CDS	putative transcriptional regulator			
-	4432645	4434588	1944	"2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)"	peg	gi|49175990|ref|NC_000913.2|_4434588_4432645		2',3'-cyclic-nucleotide 2'-phosphodiesterase	3.1.4.16	CDS	2',3'-cyclic-nucleotide 2'-phosphodiesterase	3.1.4.16	cpdB	
+	4434778	4435518	741	"3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)"	peg	gi|49175990|ref|NC_000913.2|_4434826_4435518		3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)	3.1.3.7	CDS	3'(2'),5'-bisphosphate nucleotidase	3.1.3.7	cysQ	
+	4435730	4436668	939	FIG00639934: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4435730_4436668		hypothetical protein		CDS	conserved hypothetical protein			
-	4436731	4437285	555	Protein ytfJ precursor	peg	gi|49175990|ref|NC_000913.2|_4437285_4436731		conserved hypothetical protein YtfJ-family, TIGR01626		CDS	conserved hypothetical protein			
+	4437610	4437816	207	FIG00614015: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4437610_4437816		Protein of unknown function (DUF1107).		CDS	conserved hypothetical protein			
-	4437895	4439238	1344	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_4439238_4437895		Hemolysins and related proteins containing CBS domains		CDS	conserved hypothetical protein			
-	4439561	4440199	639	Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)	peg	gi|49175990|ref|NC_000913.2|_4440199_4439561		methionine-S-sulfoxide reductase	1.8.4.11	CDS	peptide methionine sulfoxide reductase MsrA	1.8.4.11	msrA	
+	4440405	4442138	1734	Uncharacterized protein YtfM precursor	peg	gi|49175990|ref|NC_000913.2|_4440405_4442138		autotransporter secretion outer membrane protein TamA		CDS	surface antigen family protein			
+	4442135	4445914	3780	Uncharacterized protein YtfN	peg	gi|49175990|ref|NC_000913.2|_4442135_4445914		autotransporter secretion inner membrane protein TamB		CDS	conserved hypothetical protein			
+	4445917	4446258	342	UPF0131 protein YtfP	peg	gi|49175990|ref|NC_000913.2|_4445971_4446258		Uncharacterized conserved protein		CDS	AIG2-like family protein			
+	4446470	4446721	252	Programmed cell death antitoxin ChpS	peg	gi|49175990|ref|NC_000913.2|_4446509_4446721		Growth regulator		CDS	antitoxin ChpS		chpS	
+	4446715	4447065	351	Programmed cell death toxin ChpB	peg	gi|49175990|ref|NC_000913.2|_4446715_4447065		Growth inhibitor	3.1.-	CDS	mRNA interferase ChpB	3.1.-.-	chpB	
-	4447145	4447675	531	Inorganic pyrophosphatase (EC 3.6.1.1)	peg	gi|49175990|ref|NC_000913.2|_4447675_4447145		Inorganic pyrophosphatase	3.6.1.1	CDS	inorganic pyrophosphatase	3.6.1.1	ppa	
+	4447985	4448941	957	"Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor"	peg	gi|49175990|ref|NC_000913.2|_4447985_4448941		monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)		CDS	ABC transporter periplasmic-binding protein ytfQ		ytfQ	
+	4449081	4450583	1503	"Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)"	peg	gi|49175990|ref|NC_000913.2|_4449081_4450583		monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-)	3.6.3.17	CDS	ABC transporter family protein			
+	4450597	4451619	1023	"Putative sugar ABC transport system, permease protein YtfT"	peg	gi|49175990|ref|NC_000913.2|_4450597_4451619		monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)		CDS	branched-chain amino acid transport system / permease component family protein			
+	4451606	4452601	996	"Putative sugar ABC transport system, permease protein YjfF"	peg	gi|49175990|ref|NC_000913.2|_4451606_4452601		monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)		CDS	branched-chain amino acid transport system / permease component family protein			
-	4452634	4453632	999	"Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)"	peg	gi|49175990|ref|NC_000913.2|_4453632_4452634		D-fructose 1,6-bisphosphatase (EC 3.1.3.11)	3.1.3.11	CDS	fructose-1,6-bisphosphatase class 1	3.1.3.11	fbp	
+	4453808	4455181	1374	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-)	peg	gi|49175990|ref|NC_000913.2|_4453808_4455181		UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	6.3.2.-	CDS	L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase		mpl	
-	4455337	4455888	552	FIG138315: Putative alpha helix protein	peg	gi|49175990|ref|NC_000913.2|_4455888_4455337		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	4455982	4457334	1353	"TldE protein, part of TldE/TldD proteolytic complex"	peg	gi|49175990|ref|NC_000913.2|_4455994_4457334		microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62		CDS	protein pmbA		pmbA	
+	4457576	4457878	303	Soluble cytochrome b562	peg	gi|49175990|ref|NC_000913.2|_4457576_4457878		Soluble cytochrome b562		CDS	soluble cytochrome b562		cybC	
-	4457923	4458387	465	"Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)"	peg	gi|49175990|ref|NC_000913.2|_4458387_4457923		ribonucleoside-triphosphate reductase class III activase subunit (EC 1.17.4.2)	1.97.1.4	CDS	anaerobic ribonucleoside-triphosphate reductase activating protein	1.97.1.4	nrdG	
-	4458545	4460683	2139	"Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)"	peg	gi|49175990|ref|NC_000913.2|_4460683_4458545		ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2)	1.17.4.2	CDS	anaerobic ribonucleoside-triphosphate reductase	1.17.4.2	nrdD	
-	4461077	4462732	1656	Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	peg	gi|49175990|ref|NC_000913.2|_4462732_4461077		trehalose-6-phosphate hydrolase (EC 3.2.1.93)	3.2.1.93	CDS	alpha,alpha-phosphotrehalase	3.2.1.93	treC	
-	4462782	4464203	1422	"PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_4464203_4462782		PTS system trehalose-specific IIB component, Glc family (TC 4.A.1.2.4)/PTS system trehalose-specific IIC component, Glc family (TC 4.A.1.2.4)		CDS	PTS system trehalose-specific EIIBC component	2.7.1.69	treB	
-	4464322	4465269	948	Trehalose operon transcriptional repressor	peg	gi|49175990|ref|NC_000913.2|_4465269_4464322		transcriptional regulator, LacI family		CDS	trehalose operon repressor		treR	
+	4465648	4468344	2697	"Mg(2+) transport ATPase, P-type (EC 3.6.3.2)"	peg	gi|49175990|ref|NC_000913.2|_4465648_4468344		magnesium-translocating P-type ATPase	3.6.3.2	CDS	magnesium-translocating P-type ATPase	3.6.3.2	mgtA	
-	4468550	4468975	426	"Protein YjgF, putative endoribonuclease L-PSP"	peg	gi|49175990|ref|NC_000913.2|_4468975_4468550		endoribonuclease L-PSP, putative		CDS	endoribonuclease L-PSP family protein			
-	4469009	4469470	462	Aspartate carbamoyltransferase regulatory chain (PyrI)	peg	gi|49175990|ref|NC_000913.2|_4469470_4469009		aspartate carbamoyltransferase, regulatory subunit		CDS	aspartate carbamoyltransferase, regulatory subunit	2.1.3.2	pyrI	
-	4469483	4470418	936	Aspartate carbamoyltransferase (EC 2.1.3.2)	peg	gi|49175990|ref|NC_000913.2|_4470418_4469483		aspartate carbamoyltransferase (EC 2.1.3.2)	2.1.3.2	CDS	aspartate carbamoyltransferase	2.1.3.2	pyrB	
-	4470837	4471232	396	UPF0076 protein YjgH	peg	gi|49175990|ref|NC_000913.2|_4471232_4470837		Putative translation initiation inhibitor, yjgF family		CDS	endoribonuclease L-PSP family protein			
-	4471363	4472076	714	Uncharacterized oxidoreductase YjgI (EC 1.-.-.-)	peg	gi|49175990|ref|NC_000913.2|_4472076_4471363		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	conserved hypothetical protein			
+	4472147	4472740	594	"Putative HTH-type transcriptional regulator YjgJ, TetR family"	peg	gi|49175990|ref|NC_000913.2|_4472147_4472740		transcriptional regulator, TetR family		CDS	bacterial regulatory s, tetR family protein			
+	4472885	4473337	453	"Protein YjgK, linked to biofilm formation"	peg	gi|49175990|ref|NC_000913.2|_4472885_4473337		uncharacterized protein, YhcH/YjgK/YiaL family		CDS	conserved hypothetical protein			
+	4473460	4475274	1815	"Protein YjgL, putative CCAAT-box DNA binding protein subunit B"	peg	gi|49175990|ref|NC_000913.2|_4473460_4475274		hypothetical protein		CDS	conserved hypothetical protein			
-	4475330	4476334	1005	Ornithine carbamoyltransferase (EC 2.1.3.3)	peg	gi|49175990|ref|NC_000913.2|_4476334_4475330		ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3	CDS	ornithine carbamoyltransferase	2.1.3.3	argF	
+	4476496	4476912	417	Ribonuclease E inhibitor RraB	peg	gi|49175990|ref|NC_000913.2|_4476496_4476912		Uncharacterized protein conserved in bacteria		CDS	regulator of ribonuclease activity B		rraB	
-	4477057	4477560	504	Uncharacterized acetyltransferase YjgM (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_4477560_4477057		N-acetylglutamate synthase and related acetyltransferases	2.3.1.-	CDS	acetyltransferase family protein			
+	4477726	4478949	1224	Inner membrane protein YjgN	peg	gi|49175990|ref|NC_000913.2|_4477726_4478949		Predicted membrane protein		CDS	inner membrane protein yjgN		yjgN	
-	4479005	4481860	2856	Valyl-tRNA synthetase (EC 6.1.1.9)	peg	gi|49175990|ref|NC_000913.2|_4481860_4479005		valyl-tRNA synthetase (EC 6.1.1.9)	6.1.1.9	CDS	valine--tRNA ligase	6.1.1.9	valS	
-	4481860	4482303	444	DNA polymerase III chi subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_4482303_4481860		DNA polymerase III, chi subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III subunit chi	2.7.7.7	holC	
-	4482463	4483974	1512	Cytosol aminopeptidase PepA (EC 3.4.11.1)	peg	gi|49175990|ref|NC_000913.2|_4483974_4482463		aminopeptidase A. Metallo peptidase. MEROPS family M17	3.4.11.1	CDS	cytosol aminopeptidase	3.4.11.10	pepA	
+	4484262	4485341	1080	FIG000988: Predicted permease	peg	gi|49175990|ref|NC_000913.2|_4484334_4485341		Predicted permeases		CDS	lipopolysaccharide export system permease protein lptF		lptF	
+	4485341	4486423	1083	FIG000906: Predicted Permease	peg	gi|49175990|ref|NC_000913.2|_4485341_4486423		Predicted permeases		CDS	lipopolysaccharide export system permease protein lptG		lptG	
-	4486584	4488086	1503	FIG00638157: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4488086_4486584		Predicted ATPase		CDS	conserved hypothetical protein			
-	4488164	4489162	999	Positive regulator of L-idonate catabolism	peg	gi|49175990|ref|NC_000913.2|_4489162_4488164		transcriptional regulator, LacI family		CDS	HTH-type transcriptional regulator idnR		idnR	
-	4489229	4490548	1320	"L-idonate, D-gluconate, 5-keto-D-gluconate transporter"	peg	gi|49175990|ref|NC_000913.2|_4490548_4489229		L-idonate permease (TC 2.A.8.1.2)		CDS	gnt-II system L-idonate transporter		idnT	
-	4490610	4491374	765	5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	peg	gi|49175990|ref|NC_000913.2|_4491374_4490610		5-keto-D-gluconate 5-reductase (EC 1.1.1.69)	1.1.1.69	CDS	gluconate 5-dehydrogenase	1.1.1.69	gno	
-	4491398	4492429	1032	L-idonate 5-dehydrogenase (EC 1.1.1.264)	peg	gi|49175990|ref|NC_000913.2|_4492429_4491398		L-idonate 5-dehydrogenase (EC 1.1.1.264)	1.1.1.264	CDS	L-idonate 5-dehydrogenase	1.1.1.264	idnD	
+	4492646	4493209	564	Gluconokinase (EC 2.7.1.12)	peg	gi|49175990|ref|NC_000913.2|_4492646_4493209		gluconate kinase, SKI family (EC 2.7.1.12)	2.7.1.12	CDS	carbohydrate kinase, thermoresistant glucokinase family protein	2.7.1.-		
-	4493213	4494232	1020	Alcohol dehydrogenase (EC 1.1.1.1)	peg	gi|49175990|ref|NC_000913.2|_4494232_4493213		Zn-dependent alcohol dehydrogenases	1.-	CDS	zinc-binding dehydrogenase family protein			
+	4494550	4494744	195				hypothetical protein		CDS				
+	4494773	4495963	1191	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4494773_4495963		Integrase		CDS	phage integrase family protein			
+	4496295	4496660	366	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4496295_4496660		Transposase and inactivated derivatives		CDS	transposase family protein			
+	4496618	4497523	906	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4496618_4497523		Transposase and inactivated derivatives		CDS	integrase core domain protein			
-	4497700	4497942	243	Dca	peg	gi|49175990|ref|NC_000913.2|_4497942_4497700					conserved hypothetical protein			
-	4498066	4498497	432	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4498497_4498066		Predicted membrane-associated, metal-dependent hydrolase		CDS	sulfatase family protein			
-	4498455	4498814	360	Dca	peg	gi|49175990|ref|NC_000913.2|_4498814_4498455		hypothetical protein		CDS	conserved hypothetical protein			
-	4500126	4501454	1329	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4501454_4500126		transposase, IS4 family		CDS	transposase DDE domain protein			
+	4502081	4503298	1218	Sialic acid transporter (permease) NanT	peg	gi|49175990|ref|NC_000913.2|_4502081_4503298		Arabinose efflux permease		CDS	sugar (and other) transporter family protein			
+	4503310	4504428	1119	Putative oxidoreductase	peg	gi|49175990|ref|NC_000913.2|_4503310_4504428		Predicted dehydrogenases and related proteins		CDS	oxidoreductase , NAD-binding Rossmann fold family protein			
-	4504649	4504999	351	KpLE2 phage-like element; predicted protein (pseudogene)	peg	gi|49175990|ref|NC_000913.2|_4504906_4504649		hypothetical protein		CDS	putative yjhD			
+	4504929	4505132	204	Permeases of the major facilitator superfamily	peg	gi|49175990|ref|NC_000913.2|_4504929_4505132					putative membrane protein			
+	4505220	4505486	267	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4505220_4505486		Transposase and inactivated derivatives		CDS	transposase family protein			
-	4505489	4506640	1152	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4506640_4505489		Transposase and inactivated derivatives, IS30 family		CDS	integrase core domain protein			
-	4506597	4506965	369	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4506965_4506597		Transposase and inactivated derivatives		CDS	transposase family protein			
+	4507164	4507577	414	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4507164_4507577		Transposase and inactivated derivatives		CDS	integrase core domain protein			
+	4507574	4507816	243				Transposase and inactivated derivatives		CDS				
+	4507899	4508156	258	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4508013_4508156		hypothetical protein		CDS	conserved hypothetical protein			
-	4508713	4509480	768	Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1)	peg	gi|49175990|ref|NC_000913.2|_4509324_4508713		ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components	3.6.3.34	CDS	ABC transporter family protein			
+	4509284	4509448	165	FIG00638432: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4509308_4509448					conserved hypothetical protein			
-	4509481	4510437	957	Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)	peg	gi|49175990|ref|NC_000913.2|_4510437_4509481		ABC-type Fe3+-siderophore transport system, permease component		CDS	fe(3+) dicitrate transport system permease protein fecD		fecD	
-	4510434	4511432	999	Iron(III) dicitrate transport system permease protein FecC (TC 3.A.1.14.1)	peg	gi|49175990|ref|NC_000913.2|_4511432_4510434		ABC-type Fe3+-siderophore transport system, permease component		CDS	fecCD transport family protein			
-	4511429	4512331	903	"Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)"	peg	gi|49175990|ref|NC_000913.2|_4512331_4511429		ABC-type Fe3+-citrate transport system, periplasmic component		CDS	periplasmic binding family protein			
-	4512376	4514700	2325	Iron(III) dicitrate transport protein FecA	peg	gi|49175990|ref|NC_000913.2|_4514700_4512376		TonB-dependent siderophore receptor		CDS	fe(3+) dicitrate transport protein fecA		fecA	
-	4514787	4515740	954	Iron(III) dicitrate transmembrane sensor protein FecR	peg	gi|49175990|ref|NC_000913.2|_4515740_4514787		FecR family protein		CDS	fecR family protein			
-	4515737	4516258	522	RNA polymerase sigma factor FecI	peg	gi|49175990|ref|NC_000913.2|_4516258_4515737		DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog		CDS	putative RNA polymerase sigma factor fecI			
+	4516744	4517037	294	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4516744_4517037					putative transposase			
+	4517038	4517247	210	Mobile element protein	peg	gi|49175990|ref|NC_000913.2|_4517038_4517247		Transposase and inactivated derivatives, IS1 family		CDS	putative transposase			
-	4517361	4518347	987	Erythritol transcriptional regulator EryD	peg	gi|49175990|ref|NC_000913.2|_4518347_4517361		Transcriptional regulator, contains sigma factor-related N-terminal domain		CDS	helix-turn-helix family protein			
-	4518694	4520043	1350	"Gluconate permease, Bsu4004 homolog"	peg	gi|49175990|ref|NC_000913.2|_4520043_4518694		gluconate permease GntP (TC 2.A.8.1.1)		CDS	H+ symporter family protein			
-	4520150	4522117	1968	Dihydroxy-acid dehydratase (EC 4.2.1.9)	peg	gi|49175990|ref|NC_000913.2|_4522117_4520150		putative dehydratase, YjhG/YagF family		CDS	conserved hypothetical protein			
-	4522128	4523033	906	Dihydrodipicolinate synthase (EC 4.2.1.52) homolog	peg	gi|49175990|ref|NC_000913.2|_4523033_4522128		Dihydrodipicolinate synthase/N-acetylneuraminate lyase	4.2.1.52	CDS	conserved hypothetical protein			
-	4523038	4523826	789	"Transcriptional regulator, IclR family"	peg	gi|49175990|ref|NC_000913.2|_4523826_4523038		Transcriptional regulator		CDS	bacterial transcriptional regulator family protein			
-	4524129	4524911	783	Putative regulatory protein	peg	gi|49175990|ref|NC_000913.2|_4524911_4524129		transcriptional regulator, DeoR family		CDS	putative sgc region transcriptional regulator			
-	4524928	4525560	633	Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	peg	gi|49175990|ref|NC_000913.2|_4525560_4524928		ribulose-5-phosphate 3-epimerase (EC 5.1.3.1)	5.1.3.-	CDS	ribulose-phosphate 3 epimerase family protein			
-	4525572	4526003	432	"PTS system, IIA component"	peg	gi|49175990|ref|NC_000913.2|_4526003_4525572		PTS system unknown substrate IIA component, Gat family (TC 4.A.5.1.3)	2.7.1.69	CDS	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein			
-	4526134	4526940	807	Putative nucleoside triphosphatase	peg	gi|49175990|ref|NC_000913.2|_4526940_4526134		membrane complex biogenesis protein, BtpA family		CDS	putative sgc region protein SgcQ			
-	4526953	4528266	1314	"PTS system, galactitol-specific IIC component (EC 2.7.1.69)"	peg	gi|49175990|ref|NC_000913.2|_4528266_4526953		PTS system unknown substrate IIC component, Gat family (TC 4.A.5.1.3)		CDS	galactitol permease IIC component		gatC	
-	4528278	4528556	279	Putative phosphotransferase enzyme	peg	gi|49175990|ref|NC_000913.2|_4528556_4528278		PTS system unknown substrate IIB component, Gat family (TC 4.A.5.1.3)	2.7.1.69	CDS	PTS system, Lactose/Cellobiose specific IIB subunit			
-	4528553	4529674	1122	Putative sgc region protein sgcX	peg	gi|49175990|ref|NC_000913.2|_4529674_4528553		Cellulase M and related proteins		CDS	M42 glutamyl aminopeptidase family protein			
-	4530460	4531206	747	3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)	peg	gi|49175990|ref|NC_000913.2|_4531206_4530460		Methyltransferase domain.		CDS	conserved hypothetical protein			
-	4531262	4531807	546	Acetyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_4531807_4531262		Predicted acetyltransferase		CDS	acetyltransferase family protein			
-	4531819	4532076	258	FIG00640575: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4532076_4531819		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
+	4532862	4533071	210	Putative superfamily I DNA helicases	peg	gi|49175990|ref|NC_000913.2|_4532862_4533071					dNA helicase, superfamily I			
+	4533038	4534054	1017	Putative superfamily I DNA helicases	peg	gi|49175990|ref|NC_000913.2|_4533038_4534054		PLD-like domain./AAA domain.		CDS	phospholipase D family protein			
-	4534637	4535617	981	FIG00639826: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4535554_4534637		Domain of unknown function (DUF303).		CDS	conserved hypothetical protein			
-	4535682	4536788	1107	"Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase"	peg	gi|49175990|ref|NC_000913.2|_4536788_4535682		mutatrotase, YjhT family		CDS	N-acetylneuraminate epimerase	5.1.3.n1	nanM	
-	4536808	4537524	717	N-acetylneuraminic acid outer membrane channel protein NanC	peg	gi|49175990|ref|NC_000913.2|_4537356_4536808		N-acetylneuraminate-specific porin (TC 1.B.35.2.1)		CDS	putative N-acetylneuraminic acid outer membrane channel protein NanC			
+	4538980	4539582	603	type 1 fimbriae regulatory protein FimB	peg	gi|49175990|ref|NC_000913.2|_4538980_4539582		Site-specific recombinase XerD		CDS	phage integrase family protein			
+	4540060	4540656	597	type 1 fimbriae regulatory protein FimE	peg	gi|49175990|ref|NC_000913.2|_4540060_4540656		Site-specific recombinase XerD		CDS	phage integrase family protein			
+	4541138	4541686	549	type 1 fimbriae major subunit FimA	peg	gi|49175990|ref|NC_000913.2|_4541138_4541686		P pilus assembly protein, pilin FimA		CDS	type-1 fimbrial protein, A chain		fimA	
+	4541793	4542290	498	"type 1 fimbriae protein FimI, unknown function"	peg	gi|49175990|ref|NC_000913.2|_4541793_4542290		P pilus assembly protein, pilin FimA		CDS	fimbrial family protein			
+	4542327	4543052	726	chaperone FimC	peg	gi|49175990|ref|NC_000913.2|_4542327_4543052		P pilus assembly protein, chaperone PapD		CDS	chaperone protein fimC		fimC	
+	4543119	4545755	2637	type 1 fimbriae anchoring protein FimD	peg	gi|49175990|ref|NC_000913.2|_4543164_4545755		P pilus assembly protein, porin PapC		CDS	outer membrane usher protein fimD		fimD	
+	4545765	4546295	531	type 1 fimbrae adaptor subunit FimF	peg	gi|49175990|ref|NC_000913.2|_4545765_4546295		P pilus assembly protein, pilin FimA		CDS	protein fimF		fimF	
+	4546308	4546811	504	type 1 fimbrae adaptor subunit FimG	peg	gi|49175990|ref|NC_000913.2|_4546308_4546811		P pilus assembly protein, pilin FimA		CDS	protein fimG		fimG	
+	4546831	4547733	903	mannose-specific adhesin FimH	peg	gi|49175990|ref|NC_000913.2|_4546831_4547733		FimH, mannose binding./Fimbrial protein.		CDS	protein fimH		fimH	
-	4547976	4549319	1344	Fructuronate transporter GntP	peg	gi|49175990|ref|NC_000913.2|_4549319_4547976		D-fructuronate permease (TC 2.A.8.1.3)		CDS	high-affinity gluconate transporter		gntT	
+	4549659	4550843	1185	Mannonate dehydratase (EC 4.2.1.8)	peg	gi|49175990|ref|NC_000913.2|_4549659_4550843		D-mannonate dehydratase (EC 4.2.1.8)	4.2.1.8	CDS	mannonate dehydratase	4.2.1.8	uxuA	
+	4550924	4552384	1461	D-mannonate oxidoreductase (EC 1.1.1.57)	peg	gi|49175990|ref|NC_000913.2|_4550924_4552384		fructuronate reductase (EC 1.1.1.57)	1.1.1.57	CDS	mannitol dehydrogenase Rossmann domain protein			
-	4552406	4552600	195	FIG00638239: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4552600_4552406		hypothetical protein		CDS				
+	4552599	4553372	774	Uxu operon transcriptional regulator	peg	gi|49175990|ref|NC_000913.2|_4552599_4553372		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
-	4553513	4554343	831	Uncharacterized protein YjiC	peg	gi|49175990|ref|NC_000913.2|_4554343_4553513		Protein of unknown function (DUF2686).		CDS	conserved hypothetical protein			
-	4555401	4556312	912	Putative transcriptional regulator LYSR-type	peg	gi|49175990|ref|NC_000913.2|_4556312_4555401		Transcriptional regulator		CDS	HTH-type transcriptional regulator QseD		qseD	
+	4555016	4555408	393	YjiD protein	peg	gi|49175990|ref|NC_000913.2|_4555016_4555408		Uncharacterized protein conserved in bacteria		CDS	anti-adapter protein iraD		iraD	
-	4556377	4557549	1173	Isoaspartyl dipeptidase (EC 3.4.19.5) @ Asp-X dipeptidase	peg	gi|49175990|ref|NC_000913.2|_4557549_4556377		isoaspartyl dipeptidase. Metallo peptidase. MEROPS family M38	3.4.19.-	CDS	beta-aspartyl peptidase	3.4.19.5	iadA	
-	4557562	4558023	462	Putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_4558023_4557562		Uncharacterized membrane protein		CDS	inner membrane protein yjiG		yjiG	
-	4558020	4558703	684	FIG00637915: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4558703_4558020		Uncharacterized protein conserved in bacteria		CDS	nucleoside recognition family protein			
+	4558733	4558924	192	FIG00639355: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4558733_4558924					conserved hypothetical protein			
+	4558953	4559507	555	RNA:NAD 2'-phosphotransferase	peg	gi|49175990|ref|NC_000913.2|_4558953_4559507		RNA:NAD 2'-phosphotransferase	2.7.1.-	CDS	RNA 2'-phosphotransferase, Tpt1 / KptA family protein			
-	4559520	4560698	1179	Putative transport protein	peg	gi|49175990|ref|NC_000913.2|_4560698_4559520		Arabinose efflux permease		CDS	major Facilitator Superfamily protein			
-	4560766	4561737	972	FIG00637952: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4561626_4560766		Uncharacterized protein conserved in bacteria		CDS	conserved hypothetical protein			
-	4561691	4561948	258	FIG00638136: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4561948_4561691		Protein of unknown function (DUF3343).		CDS	conserved hypothetical protein			
-	4561945	4562712	768	FIG00638665: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4562712_4561945		CoA-substrate-specific enzyme activase, putative		CDS	putative CoA-substrate-specific enzyme activase domain protein			
-	4562722	4563873	1152	FIG00638031: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4563873_4562722		Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB		CDS	2-hydroxyglutaryl-CoA dehydratase, D-component family protein			
-	4563989	4565269	1281	Putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_4565269_4563989		Predicted membrane protein		CDS	conserved hypothetical protein			
-	4565310	4566542	1233	FIG00637933: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4566542_4565310		Arabinose efflux permease		CDS	multidrug resistance protein mdtM		mdtM	
-	4566817	4567050	234	putatitve membrane protein	peg	gi|49175990|ref|NC_000913.2|_4567050_4566817					putative predicted protein			
+	4567021	4567332	312	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4567021_4567332		conserved hypothetical protein (putative transposase or invertase)		CDS	conserved hypothetical family protein			
+	4567381	4567941	561	FIG00638024: Transposase ECs5301	peg	gi|49175990|ref|NC_000913.2|_4567381_4567941		conserved hypothetical protein (putative transposase or invertase)		CDS	conserved hypothetical family protein			
-	4568185	4569597	1413	"Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)"	peg	gi|49175990|ref|NC_000913.2|_4569597_4568185		transcriptional regulator, GntR family		CDS	conserved hypothetical protein			
+	4569774	4569938	165	FIG00641081: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4569774_4569938		Uncharacterized conserved small protein		CDS	conserved hypothetical protein			
+	4570437	4571954	1518	hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4570437_4571954		hypothetical protein		CDS	conserved hypothetical protein			
+	4572158	4574878	2721	helicase related protein	peg	gi|49175990|ref|NC_000913.2|_4572308_4574878		hypothetical protein		CDS	putative phosphoethanolamine transferase			
-	4574935	4575981	1047	enzyme; Degradation of DNA	peg	gi|49175990|ref|NC_000913.2|_4575969_4574935		McrBC 5-methylcytosine restriction system component		CDS	mcrBC 5-methylcytosine restriction system component family protein			
-	4575981	4577378	1398	enzyme; Degradation of DNA	peg	gi|49175990|ref|NC_000913.2|_4577360_4575981		GTPase subunit of restriction endonuclease	3.1.21.-	CDS	5-methylcytosine-specific restriction enzyme B	3.1.21.-	mcrB	
-	4577522	4577863	342	FIG00638399: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4577863_4577522		Toxin SymE, type I toxin-antitoxin system.		CDS	toxic protein symE	3.1.-.-	symE	
-	4578091	4579485	1395	"Type I restriction-modification system, specificity subunit S (EC 3.1.21.3)"	peg	gi|49175990|ref|NC_000913.2|_4579311_4578091		Restriction endonuclease S subunits	3.1.21.3	CDS	type-1 restriction enzyme EcoKI specificity protein		hsdS	
-	4579482	4581071	1590	"Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72)"	peg	gi|49175990|ref|NC_000913.2|_4581071_4579482		Type I restriction-modification system methyltransferase subunit	2.1.1.72	CDS	type I restriction enzyme EcoKI M protein	2.1.1.72	hsdM	
-	4581272	4584784	3513	"Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)"	peg	gi|49175990|ref|NC_000913.2|_4584784_4581272		Type I site-specific restriction-modification system, R (restriction) subunit and related helicases	3.1.21.3	CDS	DEAD/DEAH box helicase family protein			
+	4584972	4585886	915	Mrr restriction system protein	peg	gi|49175990|ref|NC_000913.2|_4584972_4585886		Restriction endonuclease		CDS	mrr restriction system protein		mrr	
-	4585932	4586888	957	"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"	peg	gi|49175990|ref|NC_000913.2|_4586888_4585932		Putative GTPases (G3E family)		CDS	conserved hypothetical protein			
-	4586899	4587102	204	"COG2879, Hypothetical small protein yjiX"	peg	gi|49175990|ref|NC_000913.2|_4587102_4586899		Uncharacterized small protein		CDS	conserved hypothetical protein			
-	4587152	4589302	2151	Carbon starvation protein A paralog	peg	gi|49175990|ref|NC_000913.2|_4589266_4587152		Carbon starvation protein, predicted membrane protein		CDS	inner membrane protein YjiY		yjiY	
+	4589680	4591335	1656	Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)	peg	gi|49175990|ref|NC_000913.2|_4589680_4591335		methyl-accepting chemotaxis sensory transducer with TarH sensor		CDS	methyl-accepting chemotaxis protein I		tsr	
-	4591384	4592745	1362	D-galactonate transporter	peg	gi|49175990|ref|NC_000913.2|_4592745_4591384		Sugar phosphate permease		CDS	L-galactonate transporter		yjjL	
-	4592960	4593874	915	Regulator of L-galactonate catabolism YjjM	peg	gi|49175990|ref|NC_000913.2|_4593874_4592960		transcriptional regulator, GntR family		CDS	bacterial regulatory s, gntR family protein			
+	4594013	4595035	1023	Sorbitol dehydrogenase (EC 1.1.1.14)	peg	gi|49175990|ref|NC_000913.2|_4594013_4595035		Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	zinc-binding dehydrogenase family protein			
-	4595173	4597464	2292	Phosphoglycerol transferase I (EC 2.7.8.20)	peg	gi|49175990|ref|NC_000913.2|_4597464_4595173		phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase (EC 2.7.8.20)	2.7.8.20	CDS	sulfatase family protein			
-	4597718	4598215	498	Putative glycoprotein/receptor	peg	gi|49175990|ref|NC_000913.2|_4598215_4597718		Protein of unknown function (DUF2501).		CDS	conserved hypothetical protein			
-	4598261	4598998	738	DNA replication protein DnaC	peg	gi|49175990|ref|NC_000913.2|_4598998_4598261		replicative DNA helicase loader DnaC		CDS	DNA replication protein dnaC		dnaC	
-	4599001	4599540	540	Primosomal protein I	peg	gi|49175990|ref|NC_000913.2|_4599540_4599001		hypothetical protein		CDS	primosomal protein 1		dnaT	
-	4599647	4600120	474	FIG001826: putative inner membrane protein	peg	gi|49175990|ref|NC_000913.2|_4600114_4599647		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	4600111	4600935	825	FIG023911: putative membrane protein	peg	gi|49175990|ref|NC_000913.2|_4600935_4600111		Uncharacterized conserved protein		CDS	inner membrane protein yjjP		yjjP	
+	4601500	4602225	726	Putative regulator	peg	gi|49175990|ref|NC_000913.2|_4601500_4602225		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	bacterial regulatory s, luxR family protein			
+	4602183	4602860	678	Transcriptional activator protein bglJ	peg	gi|49175990|ref|NC_000913.2|_4602183_4602860		Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	bacterial regulatory s, luxR family protein			
-	4602898	4603686	789	Ferric reductase (1.6.99.14)	peg	gi|49175990|ref|NC_000913.2|_4603686_4602898		siderophore-iron reductase FhuF		CDS	siderophore-iron reductase FhuF	1.-.-.-	fhuF	
+	4603788	4604063	276	FIG00638078: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4603788_4604063		Protein of unknown function (DUF1435).		CDS	conserved hypothetical protein			
-	4604692	4605723	1032	Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52)	peg	gi|49175990|ref|NC_000913.2|_4605723_4604692		16S rRNA m(2)G 1207 methyltransferase (EC 2.1.1.52)	2.1.1.172	CDS	ribosomal RNA small subunit methyltransferase C	2.1.1.172	rsmC	
+	4605826	4606239	414	DNA polymerase III psi subunit (EC 2.7.7.7)	peg	gi|49175990|ref|NC_000913.2|_4605826_4606239		DNA polymerase III, psi subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III, psi subunit	2.7.7.7	holD	
+	4606208	4606654	447	Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	peg	gi|49175990|ref|NC_000913.2|_4606208_4606654		[SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128)	2.3.1.128	CDS	ribosomal-protein-alanine acetyltransferase	2.3.1.128	rimI	
+	4606669	4607346	678	5'-nucleotidase YjjG (EC 3.1.3.5)	peg	gi|49175990|ref|NC_000913.2|_4606669_4607346		HAD superfamily (subfamily IA) hydrolase, TIGR02254	3.1.3.5	CDS	pyrimidine 5'-nucleotidase YjjG	3.1.3.5	yjjG	
+	4607437	4609026	1590	Peptide chain release factor 3	peg	gi|49175990|ref|NC_000913.2|_4607437_4609026		bacterial peptide chain release factor 3 (bRF-3)		CDS	peptide chain release factor 3		prfC	
+	4609419	4610024	606	Osmotically inducible protein OsmY	peg	gi|49175990|ref|NC_000913.2|_4609419_4610024		Predicted periplasmic or secreted lipoprotein		CDS	osmotically-inducible protein Y		osmY	
+	4610151	4610312	162	Putative exported protein	peg	gi|49175990|ref|NC_000913.2|_4610151_4610312		Small integral membrane protein		CDS	conserved hypothetical protein			
+	4610434	4611507	1074	FIG00638703: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4610434_4611507		Predicted esterase of the alpha-beta hydrolase superfamily		CDS	patatin-like phospholipase family protein			
+	4611504	4612283	780	Putative deoxyribonuclease YjjV	peg	gi|49175990|ref|NC_000913.2|_4611504_4612283		Mg-dependent DNase	3.1.21.-	CDS	conserved hypothetical protein			
-	4612703	4613566	864	radical activating enzyme	peg	gi|49175990|ref|NC_000913.2|_4613407_4612703		glycine radical enzyme activase, YjjW family		CDS	radical SAM superfamily protein			
-	4613538	4615088	1551	FIG00638118: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4615088_4613538		glycine radical enzyme, YjjI family		CDS	conserved hypothetical protein			
+	4613390	4613548	159	FIG00640229: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4613390_4613548					conserved hypothetical protein			
+	4615346	4616125	780	Deoxyribose-phosphate aldolase (EC 4.1.2.4)	peg	gi|49175990|ref|NC_000913.2|_4615346_4616125		deoxyribose-phosphate aldolase	4.1.2.4	CDS	deoxyribose-phosphate aldolase	4.1.2.4	deoC	
+	4616252	4617574	1323	Thymidine phosphorylase (EC 2.4.2.4)	peg	gi|49175990|ref|NC_000913.2|_4616252_4617574		thymidine phosphorylase (EC 2.4.2.4)	2.4.2.4	CDS	thymidine phosphorylase	2.4.2.4	deoA	
+	4617626	4618849	1224	Phosphopentomutase (EC 5.4.2.7)	peg	gi|49175990|ref|NC_000913.2|_4617626_4618849		phosphopentomutase	5.4.2.7	CDS	phosphopentomutase	5.4.2.7	deoB	
+	4618906	4619625	720	Purine nucleoside phosphorylase (EC 2.4.2.1)	peg	gi|49175990|ref|NC_000913.2|_4618906_4619625		purine-nucleoside phosphorylase (EC 2.4.2.1)	2.4.2.1	CDS	purine nucleoside phosphorylase	2.4.2.1	deoD	
+	4619792	4621123	1332	FIG00640556: hypothetical protein	peg	gi|49175990|ref|NC_000913.2|_4619792_4621123		HipA-like C-terminal domain./HipA-like N-terminal domain.		CDS	hipA-like N-terminal domain protein			
-	4621124	4622140	1017	Lipoate-protein ligase A	peg	gi|49175990|ref|NC_000913.2|_4622140_4621124		lipoate-protein ligase (EC 6.-.-.-)	2.7.7.63	CDS	lipoate-protein ligase A	2.7.7.63	lplA	
-	4622168	4622812	645	Lipoate-protein ligase A	peg	gi|49175990|ref|NC_000913.2|_4622812_4622168		Uncharacterized membrane protein affecting hemolysin expression		CDS	bacterial virulence factor hemolysin family protein			
+	4622918	4623886	969	Phosphoserine phosphatase (EC 3.1.3.3)	peg	gi|49175990|ref|NC_000913.2|_4622918_4623886		phosphoserine phosphatase (EC 3.1.3.3)	3.1.3.3	CDS	phosphoserine phosphatase SerB	3.1.3.3	serB	
+	4623935	4625317	1383	DNA repair protein RadA	peg	gi|49175990|ref|NC_000913.2|_4623935_4625317		DNA repair protein RadA		CDS	DNA repair protein RadA		radA	
+	4625338	4626570	1233	"NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22)"	peg	gi|49175990|ref|NC_000913.2|_4625338_4626570		Predicted ATPase/kinase involved in NAD metabolism		CDS	trifunctional NAD biosynthesis/regulator protein NadR	2.7.1.22	nadR	
+	4626604	4626771	168	putative regulatory protein	peg	gi|49175990|ref|NC_000913.2|_4626604_4626771		hypothetical protein		CDS	putative transcriptional regulator			
-	4626878	4628545	1668	"ABC transporter, ATP-binding protein"	peg	gi|49175990|ref|NC_000913.2|_4628545_4626878		ATP-binding cassette protein, ChvD family		CDS	heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	
+	4628756	4630693	1938	Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)	peg	gi|49175990|ref|NC_000913.2|_4628756_4630693		Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	3.2.1.-	CDS	soluble lytic murein transglycosylase	4.2.2.n1	slt	
+	4630783	4631109	327	Transcriptional repressor protein TrpR	peg	gi|49175990|ref|NC_000913.2|_4630783_4631109		Trp operon repressor		CDS	trp operon repressor		trpR	
-	4631256	4631777	522	Inosine/xanthosine triphosphatase (EC 3.6.1.-)	peg	gi|49175990|ref|NC_000913.2|_4631777_4631256		Uncharacterized conserved protein		CDS	conserved hypothetical protein			
-	4632464	4633333	870	Right origin-binding protein	peg	gi|49175990|ref|NC_000913.2|_4633333_4632464		transcriptional regulator, AraC family		CDS	right origin-binding protein		rob	
+	4631820	4632467	648	Phosphoglycerate mutase (EC 5.4.2.1)	peg	gi|49175990|ref|NC_000913.2|_4631820_4632467		phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	putative phosphoglycerate mutase gpmB			
+	4633544	4634017	474	Conserved uncharacterized protein CreA	peg	gi|49175990|ref|NC_000913.2|_4633544_4634017		Uncharacterized protein conserved in bacteria		CDS	creA family protein			
+	4634030	4634719	690	Two-component response regulator CreB	peg	gi|49175990|ref|NC_000913.2|_4634030_4634719		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory , C terminal family protein			
+	4634719	4636143	1425	Two-component response regulator CreC	peg	gi|49175990|ref|NC_000913.2|_4634719_4636143		Signal transduction histidine kinase	2.7.13.3	CDS	sensor protein CreC	2.7.13.3	creC	
+	4636201	4637553	1353	Inner membrane protein CreD	peg	gi|49175990|ref|NC_000913.2|_4636201_4637553		Inner membrane protein involved in colicin E2 resistance		CDS	inner membrane protein CreD		creD	
-	4637613	4638329	717	Aerobic respiration control protein arcA	peg	gi|49175990|ref|NC_000913.2|_4638329_4637613		Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	transcriptional regulatory , C terminal family protein			
+	4638965	4639651	687	"RNA methyltransferase, TrmH family, group 1"	peg	gi|49175990|ref|NC_000913.2|_4638965_4639651		rRNA methylase	2.1.1.-	CDS	RNA methyltransferase, TrmH , group 1 family protein	2.1.1.-		
